BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53660.1
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914559 jgi|Araly1|914559|Al_scaffold_0001_4813 1596 0.0
Ahg929227 jgi|Araly1|929227|scaffold_301684.1 922 0.0
> Ahg914559 jgi|Araly1|914559|Al_scaffold_0001_4813
Length=999
Score = 1596 bits (864), Expect = 0.0
Identities = 955/1000 (96%), Gaps = 2/1000 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGATCGAAGTCGGATCAGAGGCTTTCTTAGAGAAGAACATGTGACGTATGCTTCC 60
||||||||||||| ||| |||||| ||||||| | ||| |||||||||||||||||||||
Sbjct 1 ATGGCGGATCGAAATCGCATCAGAAGCTTTCTCAAAGATGAACATGTGACGTATGCTTCC 60
Query 61 ATTCTTCTCTACATCACTCTCTCTAGCGGTCAAATCTTCTTCAATAAGTGGGTATTGTCA 120
|| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 61 ATCCTTCTCTACATTACTCTATCTAGCGGTCAAATCTTCTTCAATAAGTGGGTACTGTCA 120
Query 121 TCTAAGGAAATAAACTTCCCTTATCCACTTGGATTGACATTACTTCACATGACTTTTTCC 180
|||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 121 TCTAAGGAAATAAACTTCCCTTATCCACTTGGATTGACATTACTACATATGAGTTTTTCC 180
Query 181 TCTGTTTTGTGTTTTCTCCTCACGAAGGTTTTTAAGGTCATGAAGGTTGAGGAAGGAATG 240
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 181 TCTGTTTTGTGTTTTCTCCTCACCAAGGTTTTCAAGGTCATGAAGGTTGAGGAAGGAATG 240
Query 241 ACATTAGAAATATATGTTACATCAGTTATTCCAATAGGTGCAATGTTTGCAATGACTCTA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACATTAGAAATATATGTTACATCAGTTATTCCAATAGGTGCAATGTTTGCAATGACTCTG 300
Query 301 TGGTTAGGAAACACTGCTTATCTCTACATAACTGTTGCATTTTCCCAAATGTTGAAAGCC 360
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 301 TGGTTAGGAAACACTGCTTACCTCTACATAACTGTTGCATTTTCCCAAATGTTGAAGGCC 360
Query 361 ATCATGCCTGTTGCTGTGTTTATACTTGGAGTTTGTGTTGGGCTTGAAATAATGAGCTGC 420
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 ATTATGCCTGTTGCTGTGTTTATACTTGGAGTTTGTGTTGGCCTTGAAATAATGAGCTGC 420
Query 421 AAGATGCTTTTGATAATGTCAGTCATAAGTTTTGGCGTTTTAGTCTCGTCTTATGGTGAA 480
||||||||| ||||||||||||||||||||||||| ||||||||| | |||||||| |||
Sbjct 421 AAGATGCTTATGATAATGTCAGTCATAAGTTTTGGTGTTTTAGTCGCATCTTATGGAGAA 480
Query 481 TTAAACATCAACTGGGTTGGAGTTGTTTACCAAATGGGTGGTATTGTTTCAGAAGCCTTG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 TTAAACATCAACTGGGTTGGAGTTGTTTACCAAATGGGTGGTATTGTTTCAGAAGCTTTG 540
Query 541 AGGCTAATCTTAATGGAAATTCTTGTTAAGAGGAAAGGCATCAAATTAAATCCACTCTCT 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 AGGCTAATCTTAATGGAAATTCTTGTGAAGAGGAAAGGCATCAAATTAAATCCACTCTCT 600
Query 601 CTTATGTACTACATGAGCCCATGCAGCGCGATTTGCTTGTTCATACCATGGATATTTCTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTATGTACTACATGAGCCCATGCAGCGCGATTTGCTTGTTCATACCATGGATATTTCTT 660
Query 661 GAGAAGTCGAAGATGGATACATGGAACTTTCATGTTCTTGTCTTGAGTCTTAATTCGCTA 720
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 GAGAAGTCGAAGATGGAAACATGGAACTTTCATGTTCTTGTGTTGAGTCTTAATTCGCTA 720
Query 721 TGTACATTTGCTCTCAATTTGTCGGTTTTTCTTGTGATATCTCGAACAAGTGCTCTTACT 780
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 721 TGTACATTTGCTCTCAATTTGTCGGTTTTTCTTGTGATATCTCAAACAAGTGCTCTCACT 780
Query 781 ATCCGAATTGCTGGCGTGGTTAAAGATTGGTTGGTTGTTTTGGTCTCAGCTCTTCTCTTT 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 ATCCGAATTGCTGGCGTGGTTAAAGATTGGTTGGTTGTTTTGGTCTCAGCCCTTCTCTTT 840
Query 841 GCCGAGACAAAACTCACAATCATCAATCTCTTTGGTTATGCCGTTGCCATCGTTGGTGTA 900
||||||||||||||||||||||||||| | |||||||||||| ||||||| | |||||||
Sbjct 841 GCCGAGACAAAACTCACAATCATCAATTTATTTGGTTATGCCATTGCCATTGCTGGTGTA 900
Query 901 GCTACGTATAACAACCATAAGCCAAAGAACGGTGAAAGCATAACGTTGGTTTCTCAATCT 960
||| | |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 901 GCTGCATATAACAACCATAAGCCAAAGAACGGCGAAAGAATAACGTTGGTTTCTCAATCT 960
Query 961 CCGAA-AAACTCCGACAAGAAACCCGATGGCCCATTATAG 999
|| || |||||||||||||||||||| ||||||||| |||
Sbjct 961 CC-AACAAACTCCGACAAGAAACCCGGTGGCCCATTGTAG 999
> Ahg929227 jgi|Araly1|929227|scaffold_301684.1
Length=1068
Score = 922 bits (499), Expect = 0.0
Identities = 794/934 (85%), Gaps = 29/934 (3%)
Strand=Plus/Plus
Query 15 TCGGATCAGAGGCTTTCTTAGAGAAGAACAT-GTGACGTATGCTTCCATTCTTCTCTACA 73
||||| || ||||||| | ||||| ||| | ||||| ||||||| |||||||||||| |
Sbjct 29 TCGGAGCAAAGGCTTTATGAGAGATGAA-TTCGTGACCTATGCTTACATTCTTCTCTATA 87
Query 74 TCACTCTCTCTAGCGGTCAAATCTTCTTCAATAAGTGGGTATTGTCATCTAAGGAAATAA 133
|| | || ||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 88 TCGCCCTTTCTAGTGGTCAAATCTTCTTCAATAAGTGGGTTTTGTCATCTAAGGAAATTA 147
Query 134 ACTTCCCTTATCCACTTGGATTGACATTACTTCACATGACT-TTTTCCTCTGTTTTGTGT 192
| ||||||||||| ||||||||||| ||||| || |||| | ||||||||||| |||||
Sbjct 148 ATTTCCCTTATCCTCTTGGATTGACTTTACTCCATATGA-TCTTTTCCTCTGTCTTGTGC 206
Query 193 TTTCTCCTCACGAAGGTTTTTAAGGTCATGAAGGTTGAGGAAGGAATGACATTAGAAATA 252
||||| ||||| || ||| ||||| || ||||||||||||||||||||||| ||||||||
Sbjct 207 TTTCTTCTCACCAAAGTTCTTAAGATCGTGAAGGTTGAGGAAGGAATGACACTAGAAATA 266
Query 253 TATGTTACATCAGTTATTCCAATAGGTGCAATGTTTGCAATGACTCTATGGTTAGGAAAC 312
|||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||
Sbjct 267 TATGTTACATCAGTTATTCCAATAGGTGCAATGTTTGCGATGACCCTCTGGTTGGGAAAC 326
Query 313 ACTGCTTATCTCTACATAACTGTTGCATTTTCCCAAATGTTGAAAGCCATCATGCCTGTT 372
||||| || || |||||| | ||||||||| | || |||||||| || || |||||||||
Sbjct 327 ACTGCCTACCTGTACATATCAGTTGCATTTGCGCAGATGTTGAAGGCTATAATGCCTGTT 386
Query 373 GCTGTGTTTATACTTGGAGTTTG-TGTTGGGCTTGAAATAATGAGCTGCAAGATGCTTTT 431
||||||||||| |||||||| | || ||| |||||||| |||||||||| |||||||||
Sbjct 387 GCTGTGTTTATTCTTGGAGTA-GCTGCTGGACTTGAAATGATGAGCTGCAGGATGCTTTT 445
Query 432 GATAATGTC-AGTCATAAGTTTTGGCGTTTTAGTCTCGTCTTATGGTGAATTAAACATCA 490
||||||||| | |||||||||| || |||||||| | |||||||| |||||||||||||
Sbjct 446 GATAATGTCTA-TCATAAGTTTCGGTGTTTTAGTAGCTTCTTATGGGGAATTAAACATCA 504
Query 491 ACTGGGTTGGAGTTGTTTACCAAATGGGTGGTATTGTTTCAGAAGCCTTGAGGCTAATCT 550
||||| ||||||| |||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct 505 ACTGGATTGGAGTGGTTTACCAAATGGGTGGTGTTGTTGGAGAAGCCCTGAGGCTAATCT 564
Query 551 TAATGGAAATTCTTGTTAAGAGGAAAGGCATCAAATTAAATCCACTCTCTCTTATGTACT 610
| |||||| ||||||| |||||||| |||||||| ||||| ||| |||||||||||||||
Sbjct 565 TCATGGAACTTCTTGTCAAGAGGAAGGGCATCAAGTTAAACCCAATCTCTCTTATGTACT 624
Query 611 ACATGAG-CCCATGCAGCGCGATTTGCTTGTTCATACCATGGATATTTCTTGAGAAGTCG 669
|| |||| ||| ||||| || || |||||||| | || ||||| ||||| ||||| |||
Sbjct 625 ACGTGAGTCCC-TGCAGTGCTATCTGCTTGTTTGTGCCGTGGATCTTTCTAGAGAAATCG 683
Query 670 AAGATGGAT---A----C--ATGGAACTTTCA-TGTTCTTGTCTTGA-GTCTTAATTCGC 718
|||||||| | | ||||||||| || | || |||| |||| | |||||||| |
Sbjct 684 AAGATGGACGGCAATGGCCCATGGAACTTCCACT-TTGTTGTGTTGACG-CTTAATTCCC 741
Query 719 TATGTACATTTGCTCTCAATTTGTCGGTTTTTCTTG-TGATATCTCGA-ACAAGTGCTCT 776
| ||||||||||| ||||| ||||||||||| |||| |||| |||| | || || |||||
Sbjct 742 TCTGTACATTTGCCCTCAACTTGTCGGTTTT-CTTGGTGATTTCTC-ACACGAGCGCTCT 799
Query 777 TACTATCCGAATTGCTGGCGTGGTTAAAGATTGGTTGGTTGTTTTGGTCTCAGCTCTTCT 836
||||||||| ||||||| || || || |||||| ||||||| ||||| |||||||||||
Sbjct 800 CACTATCCGAGTTGCTGGGGTTGTCAAGGATTGGGTGGTTGTCTTGGTATCAGCTCTTCT 859
Query 837 CTTTGCCGAGACAAAACTCACAATCATCAATCTCTTT-GGTTATGCCGTTGCCATCGTTG 895
||||||||| ||||||||||||||||||||||| ||| ||||| ||| ||||||| | |
Sbjct 860 CTTTGCCGACACAAAACTCACAATCATCAATCT-TTTCGGTTACGCCATTGCCATTGCCG 918
Query 896 GTGTAGCTACGTATAACAACCATAAGCCAAAGAA 929
||||||| | |||||||||||||||| |||||
Sbjct 919 GTGTAGCGGCTTATAACAACCATAAGCTGAAGAA 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37131721158
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5