BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53700.1
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923932 jgi|Araly1|923932|scaffold_105213.1 2320 0.0
Ahg929222 jgi|Araly1|929222|scaffold_301679.1 767 0.0
> Ahg923932 jgi|Araly1|923932|scaffold_105213.1
Length=1492
Score = 2320 bits (1256), Expect = 0.0
Identities = 1405/1478 (95%), Gaps = 6/1478 (0%)
Strand=Plus/Plus
Query 1 AAAAGCTTCACCGG-AAAAATGGAAGACGACGGTTATTACCTCGACACTGATCTCGATCT 59
|||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2 AAAATCTTCACCGGAAAAAATGGAAGACGACGGTTATTACCTCGACACCGATCTCGATCT 61
Query 60 CAGCTTCACCTCCACAGCCACCGACCGTACATTCACCTCATCAAGCGCTAGATCGAGTCT 119
|||||||||||||||| | || || ||||||||||| ||||||||||||||| |||||||
Sbjct 62 CAGCTTCACCTCCACAACAACAGATCGTACATTCACTTCATCAAGCGCTAGAACGAGTCT 121
Query 120 CGCACGCTCAAGCCTAACCTTAAGCTTCAACGACAGACTCTCAACCGCAACAACACCTTC 179
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 122 CGCACGCTCAAGCCTCACCTTAAGCTTCAACGACAGACTCTCCACCGCAACAACTCCTTC 181
Query 180 AACCACCACTTCCTCCGCGGCAACAACACTCCACCACCGTCGTTACGATCCTCACTGGAC 239
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 182 AACCACCACTTCCTCCGCCGCAACAACACTACACCACCGTCGTTACGATCCTCACTGGAC 241
Query 240 GTCAATCAGAGCCGCAACAACTCTCTCCTCCGACGGAAGACTCCATCTCCGTCACTTTAA 299
||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 242 ATCAATAAGAGCCGCAACAACTCTCTCCTCCGACGGAAGACTTCATCTCCGCCACTTTAA 301
Query 300 ACTCGTCCGA-CACCTCGGTACAGGAAATCTCGGCCGTGTTTTCCTCTGTCACCTCCGTG 358
|||||||| | |||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 302 ACTCGTCC-ACCACCTCGGAACTGGAAATCTTGGCCGTGTTTTCCTCTGTCACCTCCGTG 360
Query 359 ATTGCCCTAACCCTACCGGATTCGCACTTAAAGTAATCGATCGTGATGTTCTTACGGCGA 418
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 ATTGCCCTAACCCCACCGGATTCGCACTTAAAGTAATCGATCGTGATGTTCTCACGGCGA 420
Query 419 AGAAGA-TTTCACACGTGGAAACAGAAGCTGAGATCCTCTCCTTGCTAGACCACCCGTTC 477
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 AGAA-ACTTTCACACGTGGAAACAGAAGCTGAGATCCTCTCCTTGCTAGACCACCCATTC 479
Query 478 TTACCTACACTCTACGCACGTATCGATGCTTCTCACTATACTTGCCTCCTCATTGATTAT 537
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 480 TTACCTACACTCTACGCACGTATCGATGCTTCTCACTATACTTGTCTTCTCATTGATTAT 539
Query 538 TGCCCTAACGGTGATTTACATTCCTTGCTCCGTAAACAACCTAATAACCGGTTACCGATT 597
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 540 TGCCCTAACGGTGATTTACATTCCTTGCTCCGTAAGCAACCAAACAACCGGTTACCGATT 599
Query 598 TCCCCGGTTAGATTCTTCGCCGCCGAAGTACTCGTCGCCTTGGAGTATCTCCACGCCCTT 657
|| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 600 TCTTCGGTTAGATTCTTCGCCGCTGAAGTACTCGTAGCCTTGGAGTATCTCCACGCTCTC 659
Query 658 GGAATCGTTTATCGAGATCTCAAACCGGAGAATATCTTGATTCGTGAAGATGGACATATC 717
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 660 GGAATCGTTTATCGAGATCTCAAACCAGAGAATATCTTGATTCGTGAAGATGGACACATT 719
Query 718 ATGCTCTCAGATTTCGATCTCTGTTTCAAAGCCGATGTAGTTCCAACTTTCCGATCTCGA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATGCTCTCAGATTTCGATCTCTGTTTCAAAGCCGATGTAGTTCCAACTTTCCGATCTCGA 779
Query 778 CGATTCCGGAGAACTTCGTCTTCTCCGAGGAAGACTCGTCGTGGTGGCGGTTGTTTCTCC 837
|| ||||| || |||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 780 AGACTCCGGCGAGCTTCGTCTTCTCCGAGGAGGACTCGTCGTGTTGGCGGTTGTTTCTCC 839
Query 838 ACGGAGGTAGAGTACGAGAGAGAAGAGATAGTAGCGGAATTCGCGGCGGAGCCAGTGACG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACGGAGGTAGAGTACGAGAGAGAAGAGATAGTAGCGGAATTCGCGGCGGAGCCAGTGACG 899
Query 898 GCGTTTTCGAAATCGTGTGTAGGAACTCACGAGTATTTAGCGCCGGAGCTAGTCGCCGGA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GCGTTTTCGAAATCGTGTGTAGGAACTCACGAGTATTTAGCGCCGGAGCTAGTCGCCGGA 959
Query 958 AACGGACACGGAAGCGGTGTAGATTGGTGGGCGTTTGGGATATTTCTATACGAAATGTTA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 960 AACGGACACGGAAGCGGTGTAGATTGGTGGGCGTTTGGGATATTTCTATACGAGATGTTA 1019
Query 1018 TACGGAACGACGCCGTTTAAAGGTGGTACAAAAGAACAAACCCTGCGCAATATAGTATCA 1077
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1020 CACGGAACGACGCCGTTTAAAGGTGGTACCAAAGAACAAACACTGCGCAATATAGTATCA 1079
Query 1078 AACGATGACGTGGCGTTTACGTTAGAGGAAGAAGGTATGGTTGAAGCCAAGGATTTGATA 1137
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 1080 AACGATGACGTGGCGTTTACGTTAGAAGAGGAAGGTATGGTTGAAGCGAAGGATTTGATA 1139
Query 1138 GAGAAACTGTTAGTGAAAGATCCGAGGAAGAGGCTAGGATGCGCCAGGGGTGCGCAAGAT 1197
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GAGAAGCTGTTAGTGAAAGATCCGAGGAAGAGGCTAGGATGCGCCAGGGGTGCGCAAGAT 1199
Query 1198 ATCAAGAGGCATGAGTTTTTCGAAGGAATCAAGTGGCCGTTGATCAGAAACTATAAGCCG 1257
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1200 ATCAAAAGGCATGAGTTTTTCCAAGGAATCAAGTGGCCGTTGATCAGAAACTATAAACCG 1259
Query 1258 CCGGAGATTCGGGGTCTGGTGAAGAAGACGAAGGCACATGCTGGTCACGTGACTGCTGCT 1317
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1260 CCGGAGATTCGGGGGCTGGTGAAGAAGACGAAGGCACATGCTGGTCACGTGACTGCTGTT 1319
Query 1318 GTTACGCCACGGAGGAATAAGTGGTTGTGGTGGGCGCTATCGCATTTACTGCGTAGTAAA 1377
|||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1320 GTTACGCCACGGAGGAGGAAGTGGTTGTGGTGGGCTTTATCGCATTTACTGCCTAGTAAA 1379
Query 1378 AGCTTGAGCAAGAGTAGCAGTAAAATTCAGAGCAATAATAATTACTATCATTATGTGGGT 1437
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1380 AGCTTGAACAAGAGTAGCAGTAAAATTCAGAGCAACAATAATTACTATCATTATGTGGGT 1439
Query 1438 AAAAAGCTATAACGCTAGTCGCAAAAGCGTTTAATGCG 1475
|||| ||||||||||| || ||||| |||||||| |||
Sbjct 1440 AAAA-GCTATAACGCTGGTGGCAAACGCGTTTAAGGCG 1476
> Ahg929222 jgi|Araly1|929222|scaffold_301679.1
Length=1483
Score = 767 bits (415), Expect = 0.0
Identities = 1144/1481 (77%), Gaps = 110/1481 (7%)
Strand=Plus/Plus
Query 39 CCTCGACACTGATCTCGATCTCAGCTTCACCTCCA-CAGCCACCGACCGTACATTCACCT 97
||| ||||| ||||| |||||||||||||| |||| || |||||||||||||||||||||
Sbjct 45 CCT-GACACCGATCTTGATCTCAGCTTCACATCCACCA-CCACCGACCGTACATTCACCT 102
Query 98 CATCAAGCGCTAGATCGAGTCTCGCACGCTCAAGCCTAACCTTAAGCTTCAACGACAGAC 157
| | || || | | |||||| |||| ||||| |||||||||||||||||||
Sbjct 103 C--C--TCG--AG--C--G-CTCGCA----CAAGTCTAACATTAAGCTTCAACGACAGAC 147
Query 158 TCTCAACCGCAACAACACCTTCAACCACCACTTCCTCCGCGGCAACAACAC-TCCACCAC 216
|||| || | | | || | ||| ||| | ||| || | | | || | || |||||
Sbjct 148 TCTCCACTTC--CTCCGCCGT-AACAACCTCCTCCACCTCCTCTTCCAC-CGTCAACCAC 203
Query 217 CGTCGTTACGATCCTCACTGGAC-GTCAATCAGAGCCGCAACAAC-TCTCTCCTCCGACG 274
|||||| | |||||||||||| | | |||||| | | |||| ||| | |||||||||| |
Sbjct 204 CGTCGTCATGATCCTCACTGGTCAG-CAATCAAATCAGCAA-AACTTATCTCCTCCGATG 261
Query 275 GAAGAC-TCCATCTCCGTCACTTTAAACTCGTCCGACACCTCGGTACAGGAAATCTCGGC 333
||| || |||| ||||||||| | ||||| | || |||||||| |||||||| || |||
Sbjct 262 GAA-ACATCCACCTCCGTCACCTGAAACTTATACGCCACCTCGGCACAGGAAACCTAGGC 320
Query 334 CGTGTTTTCCTCTGTCACCTCCGTGATTGCCCTAACCCTACCGGATTCGCACTTAAA-GT 392
|| || ||||||||| |||||||||| | ||| || | ||||||| | |||| ||
Sbjct 321 CGAGTCTTCCTCTGTAACCTCCGTGACT--CCT---CC-GCAAGATTCGC-CCTAAAGGT 373
Query 393 AATCGATCGTGA-TGT-TC-TTACGGCGAAGAAGATTTCACACGTGGAAACAGAAGCTGA 449
|| || ||| | ||| || |||| ||||||| | || || || || || || || ||
Sbjct 374 CATTGACCGTAACTGTCTCACGACGGAGAAGAAGCTCTCTCAGGTCGAGACGGAGGCAGA 433
Query 450 GATCCTCTCCTTGCTAGACCACCCGTTCTTACCTACACTCTACGCACGTATCGATGCTTC 509
||||||||||||||||||||| || ||| | ||||| |||||||| |||||||| | ||
Sbjct 434 GATCCTCTCCTTGCTAGACCATCCTTTCCTCCCTACGCTCTACGCTCGTATCGACGAGTC 493
Query 510 TCACTATACTTGCCTCCTCATTGATTATTGC-CCTAACGGTGATTTACATTCCTTGCTCC 568
|||||| || || |||||||||||||| ||| || ||||| || |||||||||||| | |
Sbjct 494 TCACTACACGTGTCTCCTCATTGATTA-TGCACCAAACGGAGACTTACATTCCTTGTTAC 552
Query 569 GTAAACAACCTAATAACCGGTTACCGATTTC-CCCGGTTAGATTCTTCGCCGCCGAAGTA 627
| || |||||| |||||| ||||||| ||| ||||||||||||||||||||||||||
Sbjct 553 GCAAGCAACCTGGTAACCGTTTACCGA-TTCAGCCGGTTAGATTCTTCGCCGCCGAAGTT 611
Query 628 CTCGTCGCCTTGGAGTATCTCCACGCCCTTGGAATCGTTTATCGAGATCTCAAACCGGAG 687
|||||||| || ||||| || ||||| | |||||||| || || ||||| ||||| ||
Sbjct 612 CTCGTCGCATTAGAGTACCTTCACGCAATGGGAATCGTATACCGCGATCTTAAACCTGAA 671
Query 688 AATATCTTGATTCGTGAAGATGGACATATCATGCTCTCAGATTTCGATCTCTGTTTCAAA 747
|| | ||| |||||||||| || || ||||| | || ||||| ||||| ||||| |||
Sbjct 672 AACGTTTTGCTTCGTGAAGACGGTCACGTCATGTTGTCGGATTTTGATCTTTGTTTTAAA 731
Query 748 GCCGATGTAGTTCC-AACTTTCCGATCTCGACGATTCCGGAGAACTTCGTCTTCTCCGAG 806
|||| || || || | |||| |||||| || | |||||||||||| || |||||
Sbjct 732 TCCGACGTTGTCCCTACCTTT-AAATCTCGTCGGTACCGGAGAACTTCTTCGTCTCC--- 787
Query 807 GAAGAC-TCGT-CGTG--GTG-GCGGTTG-TT-T-C--T-CCACGGAGGTAGAGTACGAG 855
| | | |||| | | | | ||||||| || | | | | ||||| | ||||||||
Sbjct 788 GTCG-CTTCGTAGGAGAAG-GAGCGGTTGCTTCTCCGTTGCTGCGGAGAAAAAGTACGAG 845
Query 856 AGAGAAGAGATAGTAGCGGAATTCGCGGCGGAGCCAGTGACGGCGTTTTCGAA-ATCGTG 914
||||| ||||| || |||| || ||||| ||||| |||||||||||||| || || ||
Sbjct 846 AGAGAGGAGATCGTTTCGGAGTTTGCGGCAGAGCCTGTGACGGCGTTTTC-AAGGTCTTG 904
Query 915 TGTAGGAACTCACGAGTA-TTTAGCGCCGGAGCTAGTCGCCGGAAACGGACACGGAAGCG 973
|| ||||| || ||||| || || ||||||||||||||||| ||||||||||||||||
Sbjct 905 CGTCGGAACACATGAGTACCTT-GCACCGGAGCTAGTCGCCGGCAACGGACACGGAAGCG 963
Query 974 GTGTAGATTGGTGGGCGTTTGGGATATTTCTATACGAAATGTTATACGGAACGACGCCGT 1033
| ||||| |||||||||||||| ||||| || ||||| |||| ||||| ||||||||||
Sbjct 964 GAGTAGACTGGTGGGCGTTTGGAATATTCCTTTACGAGTTGTTGTACGGTACGACGCCGT 1023
Query 1034 TTAAAGGTG-GTACAAAAGAACAAACCCTGCGCAATATAGTATCAAACGA-TGACGT--G 1089
|||| || | | | ||||| ||||||||||||||||||||||| || | | | || |
Sbjct 1024 TTAAGGGAGAG-AGTAAAGAGCAAACCCTGCGCAATATAGTATC-GACCACT-AAGTCCG 1080
Query 1090 -GCGTTTACGTTA-GAGGAAGAAGGTAT-GGTTGAAGCCAAGGATTTGATAGAGAAACTG 1146
| |||| | | | ||| | | | | | ||||| | ||||||||| ||||| ||
Sbjct 1081 CGAGTTT-C--CACGTGGACGTTGAT-TCAGAGGAAGCTAGGGATTTGATTGAGAAGCTT 1136
Query 1147 TTAGTGAAAGATCCGAGGAAGAGGCTAGGATGCGCCAGGGGTGCGCAAGATATCAAGAGG 1206
|| || || || |||||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 1137 TTGGTTAAGGACCCGAGGAAAAGGCTAGGATGCGCCAGGGGTGCGCAAGATATCAA-ACG 1195
Query 1207 -CATGAGTTTTTCGAAGGAATCAAGTGGCCGTTGATCAGAAACTATAAGCCGCCGGA-GA 1264
||| ||||||||| |||||||||||||||||||| || | |||||||| ||||| ||
Sbjct 1196 TCATCCGTTTTTCGATGGAATCAAGTGGCCGTTGATTAGGCATTATAAGCCACCGGAAGA 1255
Query 1265 --TTCGGGGTCTGGTGA-A--GAAG--A-CGA-AGGCACATGCTGGTCACGTGACTGCTG 1315
|| | ||||| |||| | |||| | ||| | |||||||||||||||||| ||| |
Sbjct 1256 AGTTAGAGGTCTTGTGATAAAGAAGTCAACGAGAT-CACATGCTGGTCACGTGATTGCCG 1314
Query 1316 CTGTTACGCCA---CGGAGGAA-TAAGTGGTTGTGGTGGGCGCTATCGCATTTACTGCGT 1371
| || | ||| |||||||| | | | |||||| ||||| | || ||||||||||
Sbjct 1315 -T-TT-CACCAAGACGGAGGAAGTCATTT-TTGTGGAGGGCGTTGTCATATTTACTGCGC 1370
Query 1372 AGTAAAAGCT-TGAGCAAGAGTAGCAGTAAAATTCAGAGCAATAATAATTACTATCATTA 1430
|||||| || | || | || | ||||||| ||||||||||| |||||||||||||||
Sbjct 1371 GGTAAAAACTCT-AGT--G-GTGGGAGTAAAAATCAGAGCAATAGTAATTACTATCATTA 1426
Query 1431 TGTGGGTAAAAAGCTATAACGCTAGTCGCAAAAGCGTTTAA 1471
|||||| |||| |||| ||| ||||||||| ||||||||
Sbjct 1427 TGTGGGCAAAA-GCTA---CGCGAGTCGCAAACGCGTTTAA 1463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5