BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53700.1 Length=1530 Score E Sequences producing significant alignments: (Bits) Value Ahg923932 jgi|Araly1|923932|scaffold_105213.1 2320 0.0 Ahg929222 jgi|Araly1|929222|scaffold_301679.1 767 0.0 > Ahg923932 jgi|Araly1|923932|scaffold_105213.1 Length=1492 Score = 2320 bits (1256), Expect = 0.0 Identities = 1405/1478 (95%), Gaps = 6/1478 (0%) Strand=Plus/Plus Query 1 AAAAGCTTCACCGG-AAAAATGGAAGACGACGGTTATTACCTCGACACTGATCTCGATCT 59 |||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2 AAAATCTTCACCGGAAAAAATGGAAGACGACGGTTATTACCTCGACACCGATCTCGATCT 61 Query 60 CAGCTTCACCTCCACAGCCACCGACCGTACATTCACCTCATCAAGCGCTAGATCGAGTCT 119 |||||||||||||||| | || || ||||||||||| ||||||||||||||| ||||||| Sbjct 62 CAGCTTCACCTCCACAACAACAGATCGTACATTCACTTCATCAAGCGCTAGAACGAGTCT 121 Query 120 CGCACGCTCAAGCCTAACCTTAAGCTTCAACGACAGACTCTCAACCGCAACAACACCTTC 179 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 122 CGCACGCTCAAGCCTCACCTTAAGCTTCAACGACAGACTCTCCACCGCAACAACTCCTTC 181 Query 180 AACCACCACTTCCTCCGCGGCAACAACACTCCACCACCGTCGTTACGATCCTCACTGGAC 239 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 182 AACCACCACTTCCTCCGCCGCAACAACACTACACCACCGTCGTTACGATCCTCACTGGAC 241 Query 240 GTCAATCAGAGCCGCAACAACTCTCTCCTCCGACGGAAGACTCCATCTCCGTCACTTTAA 299 ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 242 ATCAATAAGAGCCGCAACAACTCTCTCCTCCGACGGAAGACTTCATCTCCGCCACTTTAA 301 Query 300 ACTCGTCCGA-CACCTCGGTACAGGAAATCTCGGCCGTGTTTTCCTCTGTCACCTCCGTG 358 |||||||| | |||||||| || |||||||| |||||||||||||||||||||||||||| Sbjct 302 ACTCGTCC-ACCACCTCGGAACTGGAAATCTTGGCCGTGTTTTCCTCTGTCACCTCCGTG 360 Query 359 ATTGCCCTAACCCTACCGGATTCGCACTTAAAGTAATCGATCGTGATGTTCTTACGGCGA 418 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 361 ATTGCCCTAACCCCACCGGATTCGCACTTAAAGTAATCGATCGTGATGTTCTCACGGCGA 420 Query 419 AGAAGA-TTTCACACGTGGAAACAGAAGCTGAGATCCTCTCCTTGCTAGACCACCCGTTC 477 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 421 AGAA-ACTTTCACACGTGGAAACAGAAGCTGAGATCCTCTCCTTGCTAGACCACCCATTC 479 Query 478 TTACCTACACTCTACGCACGTATCGATGCTTCTCACTATACTTGCCTCCTCATTGATTAT 537 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 480 TTACCTACACTCTACGCACGTATCGATGCTTCTCACTATACTTGTCTTCTCATTGATTAT 539 Query 538 TGCCCTAACGGTGATTTACATTCCTTGCTCCGTAAACAACCTAATAACCGGTTACCGATT 597 ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| Sbjct 540 TGCCCTAACGGTGATTTACATTCCTTGCTCCGTAAGCAACCAAACAACCGGTTACCGATT 599 Query 598 TCCCCGGTTAGATTCTTCGCCGCCGAAGTACTCGTCGCCTTGGAGTATCTCCACGCCCTT 657 || ||||||||||||||||||| ||||||||||| |||||||||||||||||||| || Sbjct 600 TCTTCGGTTAGATTCTTCGCCGCTGAAGTACTCGTAGCCTTGGAGTATCTCCACGCTCTC 659 Query 658 GGAATCGTTTATCGAGATCTCAAACCGGAGAATATCTTGATTCGTGAAGATGGACATATC 717 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 660 GGAATCGTTTATCGAGATCTCAAACCAGAGAATATCTTGATTCGTGAAGATGGACACATT 719 Query 718 ATGCTCTCAGATTTCGATCTCTGTTTCAAAGCCGATGTAGTTCCAACTTTCCGATCTCGA 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 ATGCTCTCAGATTTCGATCTCTGTTTCAAAGCCGATGTAGTTCCAACTTTCCGATCTCGA 779 Query 778 CGATTCCGGAGAACTTCGTCTTCTCCGAGGAAGACTCGTCGTGGTGGCGGTTGTTTCTCC 837 || ||||| || |||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 780 AGACTCCGGCGAGCTTCGTCTTCTCCGAGGAGGACTCGTCGTGTTGGCGGTTGTTTCTCC 839 Query 838 ACGGAGGTAGAGTACGAGAGAGAAGAGATAGTAGCGGAATTCGCGGCGGAGCCAGTGACG 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 ACGGAGGTAGAGTACGAGAGAGAAGAGATAGTAGCGGAATTCGCGGCGGAGCCAGTGACG 899 Query 898 GCGTTTTCGAAATCGTGTGTAGGAACTCACGAGTATTTAGCGCCGGAGCTAGTCGCCGGA 957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 GCGTTTTCGAAATCGTGTGTAGGAACTCACGAGTATTTAGCGCCGGAGCTAGTCGCCGGA 959 Query 958 AACGGACACGGAAGCGGTGTAGATTGGTGGGCGTTTGGGATATTTCTATACGAAATGTTA 1017 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 960 AACGGACACGGAAGCGGTGTAGATTGGTGGGCGTTTGGGATATTTCTATACGAGATGTTA 1019 Query 1018 TACGGAACGACGCCGTTTAAAGGTGGTACAAAAGAACAAACCCTGCGCAATATAGTATCA 1077 |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1020 CACGGAACGACGCCGTTTAAAGGTGGTACCAAAGAACAAACACTGCGCAATATAGTATCA 1079 Query 1078 AACGATGACGTGGCGTTTACGTTAGAGGAAGAAGGTATGGTTGAAGCCAAGGATTTGATA 1137 |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| Sbjct 1080 AACGATGACGTGGCGTTTACGTTAGAAGAGGAAGGTATGGTTGAAGCGAAGGATTTGATA 1139 Query 1138 GAGAAACTGTTAGTGAAAGATCCGAGGAAGAGGCTAGGATGCGCCAGGGGTGCGCAAGAT 1197 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 GAGAAGCTGTTAGTGAAAGATCCGAGGAAGAGGCTAGGATGCGCCAGGGGTGCGCAAGAT 1199 Query 1198 ATCAAGAGGCATGAGTTTTTCGAAGGAATCAAGTGGCCGTTGATCAGAAACTATAAGCCG 1257 ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 1200 ATCAAAAGGCATGAGTTTTTCCAAGGAATCAAGTGGCCGTTGATCAGAAACTATAAACCG 1259 Query 1258 CCGGAGATTCGGGGTCTGGTGAAGAAGACGAAGGCACATGCTGGTCACGTGACTGCTGCT 1317 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1260 CCGGAGATTCGGGGGCTGGTGAAGAAGACGAAGGCACATGCTGGTCACGTGACTGCTGTT 1319 Query 1318 GTTACGCCACGGAGGAATAAGTGGTTGTGGTGGGCGCTATCGCATTTACTGCGTAGTAAA 1377 |||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| Sbjct 1320 GTTACGCCACGGAGGAGGAAGTGGTTGTGGTGGGCTTTATCGCATTTACTGCCTAGTAAA 1379 Query 1378 AGCTTGAGCAAGAGTAGCAGTAAAATTCAGAGCAATAATAATTACTATCATTATGTGGGT 1437 ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1380 AGCTTGAACAAGAGTAGCAGTAAAATTCAGAGCAACAATAATTACTATCATTATGTGGGT 1439 Query 1438 AAAAAGCTATAACGCTAGTCGCAAAAGCGTTTAATGCG 1475 |||| ||||||||||| || ||||| |||||||| ||| Sbjct 1440 AAAA-GCTATAACGCTGGTGGCAAACGCGTTTAAGGCG 1476 > Ahg929222 jgi|Araly1|929222|scaffold_301679.1 Length=1483 Score = 767 bits (415), Expect = 0.0 Identities = 1144/1481 (77%), Gaps = 110/1481 (7%) Strand=Plus/Plus Query 39 CCTCGACACTGATCTCGATCTCAGCTTCACCTCCA-CAGCCACCGACCGTACATTCACCT 97 ||| ||||| ||||| |||||||||||||| |||| || ||||||||||||||||||||| Sbjct 45 CCT-GACACCGATCTTGATCTCAGCTTCACATCCACCA-CCACCGACCGTACATTCACCT 102 Query 98 CATCAAGCGCTAGATCGAGTCTCGCACGCTCAAGCCTAACCTTAAGCTTCAACGACAGAC 157 | | || || | | |||||| |||| ||||| ||||||||||||||||||| Sbjct 103 C--C--TCG--AG--C--G-CTCGCA----CAAGTCTAACATTAAGCTTCAACGACAGAC 147 Query 158 TCTCAACCGCAACAACACCTTCAACCACCACTTCCTCCGCGGCAACAACAC-TCCACCAC 216 |||| || | | | || | ||| ||| | ||| || | | | || | || ||||| Sbjct 148 TCTCCACTTC--CTCCGCCGT-AACAACCTCCTCCACCTCCTCTTCCAC-CGTCAACCAC 203 Query 217 CGTCGTTACGATCCTCACTGGAC-GTCAATCAGAGCCGCAACAAC-TCTCTCCTCCGACG 274 |||||| | |||||||||||| | | |||||| | | |||| ||| | |||||||||| | Sbjct 204 CGTCGTCATGATCCTCACTGGTCAG-CAATCAAATCAGCAA-AACTTATCTCCTCCGATG 261 Query 275 GAAGAC-TCCATCTCCGTCACTTTAAACTCGTCCGACACCTCGGTACAGGAAATCTCGGC 333 ||| || |||| ||||||||| | ||||| | || |||||||| |||||||| || ||| Sbjct 262 GAA-ACATCCACCTCCGTCACCTGAAACTTATACGCCACCTCGGCACAGGAAACCTAGGC 320 Query 334 CGTGTTTTCCTCTGTCACCTCCGTGATTGCCCTAACCCTACCGGATTCGCACTTAAA-GT 392 || || ||||||||| |||||||||| | ||| || | ||||||| | |||| || Sbjct 321 CGAGTCTTCCTCTGTAACCTCCGTGACT--CCT---CC-GCAAGATTCGC-CCTAAAGGT 373 Query 393 AATCGATCGTGA-TGT-TC-TTACGGCGAAGAAGATTTCACACGTGGAAACAGAAGCTGA 449 || || ||| | ||| || |||| ||||||| | || || || || || || || || Sbjct 374 CATTGACCGTAACTGTCTCACGACGGAGAAGAAGCTCTCTCAGGTCGAGACGGAGGCAGA 433 Query 450 GATCCTCTCCTTGCTAGACCACCCGTTCTTACCTACACTCTACGCACGTATCGATGCTTC 509 ||||||||||||||||||||| || ||| | ||||| |||||||| |||||||| | || Sbjct 434 GATCCTCTCCTTGCTAGACCATCCTTTCCTCCCTACGCTCTACGCTCGTATCGACGAGTC 493 Query 510 TCACTATACTTGCCTCCTCATTGATTATTGC-CCTAACGGTGATTTACATTCCTTGCTCC 568 |||||| || || |||||||||||||| ||| || ||||| || |||||||||||| | | Sbjct 494 TCACTACACGTGTCTCCTCATTGATTA-TGCACCAAACGGAGACTTACATTCCTTGTTAC 552 Query 569 GTAAACAACCTAATAACCGGTTACCGATTTC-CCCGGTTAGATTCTTCGCCGCCGAAGTA 627 | || |||||| |||||| ||||||| ||| |||||||||||||||||||||||||| Sbjct 553 GCAAGCAACCTGGTAACCGTTTACCGA-TTCAGCCGGTTAGATTCTTCGCCGCCGAAGTT 611 Query 628 CTCGTCGCCTTGGAGTATCTCCACGCCCTTGGAATCGTTTATCGAGATCTCAAACCGGAG 687 |||||||| || ||||| || ||||| | |||||||| || || ||||| ||||| || Sbjct 612 CTCGTCGCATTAGAGTACCTTCACGCAATGGGAATCGTATACCGCGATCTTAAACCTGAA 671 Query 688 AATATCTTGATTCGTGAAGATGGACATATCATGCTCTCAGATTTCGATCTCTGTTTCAAA 747 || | ||| |||||||||| || || ||||| | || ||||| ||||| ||||| ||| Sbjct 672 AACGTTTTGCTTCGTGAAGACGGTCACGTCATGTTGTCGGATTTTGATCTTTGTTTTAAA 731 Query 748 GCCGATGTAGTTCC-AACTTTCCGATCTCGACGATTCCGGAGAACTTCGTCTTCTCCGAG 806 |||| || || || | |||| |||||| || | |||||||||||| || ||||| Sbjct 732 TCCGACGTTGTCCCTACCTTT-AAATCTCGTCGGTACCGGAGAACTTCTTCGTCTCC--- 787 Query 807 GAAGAC-TCGT-CGTG--GTG-GCGGTTG-TT-T-C--T-CCACGGAGGTAGAGTACGAG 855 | | | |||| | | | | ||||||| || | | | | ||||| | |||||||| Sbjct 788 GTCG-CTTCGTAGGAGAAG-GAGCGGTTGCTTCTCCGTTGCTGCGGAGAAAAAGTACGAG 845 Query 856 AGAGAAGAGATAGTAGCGGAATTCGCGGCGGAGCCAGTGACGGCGTTTTCGAA-ATCGTG 914 ||||| ||||| || |||| || ||||| ||||| |||||||||||||| || || || Sbjct 846 AGAGAGGAGATCGTTTCGGAGTTTGCGGCAGAGCCTGTGACGGCGTTTTC-AAGGTCTTG 904 Query 915 TGTAGGAACTCACGAGTA-TTTAGCGCCGGAGCTAGTCGCCGGAAACGGACACGGAAGCG 973 || ||||| || ||||| || || ||||||||||||||||| |||||||||||||||| Sbjct 905 CGTCGGAACACATGAGTACCTT-GCACCGGAGCTAGTCGCCGGCAACGGACACGGAAGCG 963 Query 974 GTGTAGATTGGTGGGCGTTTGGGATATTTCTATACGAAATGTTATACGGAACGACGCCGT 1033 | ||||| |||||||||||||| ||||| || ||||| |||| ||||| |||||||||| Sbjct 964 GAGTAGACTGGTGGGCGTTTGGAATATTCCTTTACGAGTTGTTGTACGGTACGACGCCGT 1023 Query 1034 TTAAAGGTG-GTACAAAAGAACAAACCCTGCGCAATATAGTATCAAACGA-TGACGT--G 1089 |||| || | | | ||||| ||||||||||||||||||||||| || | | | || | Sbjct 1024 TTAAGGGAGAG-AGTAAAGAGCAAACCCTGCGCAATATAGTATC-GACCACT-AAGTCCG 1080 Query 1090 -GCGTTTACGTTA-GAGGAAGAAGGTAT-GGTTGAAGCCAAGGATTTGATAGAGAAACTG 1146 | |||| | | | ||| | | | | | ||||| | ||||||||| ||||| || Sbjct 1081 CGAGTTT-C--CACGTGGACGTTGAT-TCAGAGGAAGCTAGGGATTTGATTGAGAAGCTT 1136 Query 1147 TTAGTGAAAGATCCGAGGAAGAGGCTAGGATGCGCCAGGGGTGCGCAAGATATCAAGAGG 1206 || || || || |||||||| ||||||||||||||||||||||||||||||||||| | | Sbjct 1137 TTGGTTAAGGACCCGAGGAAAAGGCTAGGATGCGCCAGGGGTGCGCAAGATATCAA-ACG 1195 Query 1207 -CATGAGTTTTTCGAAGGAATCAAGTGGCCGTTGATCAGAAACTATAAGCCGCCGGA-GA 1264 ||| ||||||||| |||||||||||||||||||| || | |||||||| ||||| || Sbjct 1196 TCATCCGTTTTTCGATGGAATCAAGTGGCCGTTGATTAGGCATTATAAGCCACCGGAAGA 1255 Query 1265 --TTCGGGGTCTGGTGA-A--GAAG--A-CGA-AGGCACATGCTGGTCACGTGACTGCTG 1315 || | ||||| |||| | |||| | ||| | |||||||||||||||||| ||| | Sbjct 1256 AGTTAGAGGTCTTGTGATAAAGAAGTCAACGAGAT-CACATGCTGGTCACGTGATTGCCG 1314 Query 1316 CTGTTACGCCA---CGGAGGAA-TAAGTGGTTGTGGTGGGCGCTATCGCATTTACTGCGT 1371 | || | ||| |||||||| | | | |||||| ||||| | || |||||||||| Sbjct 1315 -T-TT-CACCAAGACGGAGGAAGTCATTT-TTGTGGAGGGCGTTGTCATATTTACTGCGC 1370 Query 1372 AGTAAAAGCT-TGAGCAAGAGTAGCAGTAAAATTCAGAGCAATAATAATTACTATCATTA 1430 |||||| || | || | || | ||||||| ||||||||||| ||||||||||||||| Sbjct 1371 GGTAAAAACTCT-AGT--G-GTGGGAGTAAAAATCAGAGCAATAGTAATTACTATCATTA 1426 Query 1431 TGTGGGTAAAAAGCTATAACGCTAGTCGCAAAAGCGTTTAA 1471 |||||| |||| |||| ||| ||||||||| |||||||| Sbjct 1427 TGTGGGCAAAA-GCTA---CGCGAGTCGCAAACGCGTTTAA 1463 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57287728480 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5