BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G53708.1

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923933 jgi|Araly1|923933|scaffold_105214.1                        285    3e-76
  Ahg474504 jgi|Araly1|474504|fgenesh2_kg.1__4458__AT1G53710.1        54.7    8e-07


> Ahg923933 jgi|Araly1|923933|scaffold_105214.1
Length=232

 Score =  285 bits (154),  Expect = 3e-76
 Identities = 165/170 (97%), Gaps = 1/170 (1%)
 Strand=Plus/Plus

Query  114  ACCaaaaaaaCCTTGATTGTTGTAATGGCTGAGTTCAAGAGTAAGTTAAACAAAGGTCAC  173
            ||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||
Sbjct  1    ACC-AAAAAACCTTGGTTGTGGTAATGGCTGAGTTCAAGAGTAAGCTAAACAAAGGTCAC  59

Query  174  GCCTTTACAAGCAAATGTGCTTCCTTGGTGAAGGAGCAACGAGCTCGTCTCTACATTCTT  233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   GCCTTTACAAGCAAATGTGCTTCCTTGGTGAAGGAGCAACGAGCTCGTCTCTACATTCTT  119

Query  234  CGTCGTTGTGCTACCATGCTTTGTTGCTGGTACATCCAAGGCGATGACTC  283
            |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  120  CGTCGTTGCGCTACCATGCTTTGTTGCTGGTACATCCAAGGCGATGACTC  169


> Ahg474504 jgi|Araly1|474504|fgenesh2_kg.1__4458__AT1G53710.1
Length=1896

 Score = 54.7 bits (29),  Expect = 8e-07
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Minus

Query  601   AATAAGACCAAATAAATAAGTCTATGGTT  629
             |||||||||||||||||||||||||||||
Sbjct  1896  AATAAGACCAAATAAATAAGTCTATGGTT  1868



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23064364785


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5