BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53708.1 Length=630 Score E Sequences producing significant alignments: (Bits) Value Ahg923933 jgi|Araly1|923933|scaffold_105214.1 285 3e-76 Ahg474504 jgi|Araly1|474504|fgenesh2_kg.1__4458__AT1G53710.1 54.7 8e-07 > Ahg923933 jgi|Araly1|923933|scaffold_105214.1 Length=232 Score = 285 bits (154), Expect = 3e-76 Identities = 165/170 (97%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 114 ACCaaaaaaaCCTTGATTGTTGTAATGGCTGAGTTCAAGAGTAAGTTAAACAAAGGTCAC 173 ||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| Sbjct 1 ACC-AAAAAACCTTGGTTGTGGTAATGGCTGAGTTCAAGAGTAAGCTAAACAAAGGTCAC 59 Query 174 GCCTTTACAAGCAAATGTGCTTCCTTGGTGAAGGAGCAACGAGCTCGTCTCTACATTCTT 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GCCTTTACAAGCAAATGTGCTTCCTTGGTGAAGGAGCAACGAGCTCGTCTCTACATTCTT 119 Query 234 CGTCGTTGTGCTACCATGCTTTGTTGCTGGTACATCCAAGGCGATGACTC 283 |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CGTCGTTGCGCTACCATGCTTTGTTGCTGGTACATCCAAGGCGATGACTC 169 > Ahg474504 jgi|Araly1|474504|fgenesh2_kg.1__4458__AT1G53710.1 Length=1896 Score = 54.7 bits (29), Expect = 8e-07 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 601 AATAAGACCAAATAAATAAGTCTATGGTT 629 ||||||||||||||||||||||||||||| Sbjct 1896 AATAAGACCAAATAAATAAGTCTATGGTT 1868 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23064364785 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5