BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53710.1
Length=1890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474504 jgi|Araly1|474504|fgenesh2_kg.1__4458__AT1G53710.1 2820 0.0
> Ahg474504 jgi|Araly1|474504|fgenesh2_kg.1__4458__AT1G53710.1
Length=1896
Score = 2820 bits (1527), Expect = 0.0
Identities = 1786/1907 (94%), Gaps = 34/1907 (2%)
Strand=Plus/Plus
Query 2 TACTCAAACGCAGCTCAGCGTCTGTCGCGTCTTGACCGCT-CTTTTGGTCAACGACAACG 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1 TACTCAAACGCAGCTCAGCGTCTGTCGCGTCTTGACCGCTATTTTTGGTCAACAACAACG 60
Query 61 ATCATTAGATACATATCTCGGC---G-AAGCAAAGCCGAGAAGGGAGGAGATTCAGATAC 116
|||| || |||||||||| | ||||||||||||||||||||||||||||||| |
Sbjct 61 ATCACCAG----ATATCTCGGCGAAGCAAGCAAAGCCGAGAAGGGAGGAGATTCAGATGC 116
Query 117 TCGGAAAAAATGAAACACCACCATAAGCTCACGGTGGCGTTATGTCTCATTTGGGCTGCG 176
|||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 117 TCGG-GAAGATGAAACACCACCATAAGCTCACGGTGGCCTTATGTCTCATTTGGGCTGCG 175
Query 177 ACGATCCTCTACGGAGAAATGTTCGCCTTCTGGGTTCCTTCTCTCTTCACTTGTTCTTGG 236
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 ACGATCCTCTACGGCGAAATGTTCGCCTTCTGGGTTCCTTCTCTCTTCACTTGTTCTTGG 235
Query 237 CCTCACCATAAGAGTGATGGAGTGGAGAGTGATGGAAATTTTACTAAAGTAGCCATTGTT 296
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 236 CCTCACCATAAGAGTTATGGAGTGGAGAGTGATGGGAATTTTACTAAAGTAGCCATTGTT 295
Query 297 ACTGATCCACAGCTCATGGATAAGACATCGTTTCGTTTGTCGTCAAAGACACTTGCTTTG 356
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 296 ACTGATCCACAGCTCATGGATAAGACATCGTTTCGTTTGTCGTCAAAGACGCTTGCTTTG 355
Query 357 GAGCTTGCTCAGTTTTATACTGATATAAACATGCGGAGATCATTCTTTCGGTCTGTCTTG 416
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GAGCTTGCTCAGCTTTATACTGATATAAACATGCGGAGATCATTCTTTCGGTCTGTCTTG 415
Query 417 CCTTTCAAACCCGATGTTGTTTTGTTTTTAGGTGATTATTTCGATGGCGGGCCATTTCTT 476
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 416 CCCTTCAAACCCGATGTTGTTTTGTTTTTAGGTGATTATTTCGACAGCGGGCCATTTCTT 475
Query 477 TCCGAGGAAGAATGGCAGGAGTCTTTAAACCGATTGAAACATGTATTTGGTTTGAATTCA 536
||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||
Sbjct 476 CCCGAGGAAGAATGGCAGGAATCTTTAAGCCGATTTAAACATGTATTTGGTTTGAATTCT 535
Query 537 GAAGGCAGAGTTGGGGATATCCCTACATTTTACATCCCTGGGAATCATGA-CATTGGCTA 595
|||||| |||||| || |||||||||||||||||||||||||| ||||| | |||||||
Sbjct 536 CAAGGCAAAGTTGGTGACATCCCTACATTTTACATCCCTGGGAACCATGATC-TTGGCTA 594
Query 596 TTCTCGGGTTGCTTCCCATAAGCAAGGCGTGATTGATCGATACGAAAAAGTATTTGGGGT 655
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 595 TTCTCGGGTTGCTTCCCATAAGCAAGACGTGATTGATCGATACGAAAAAGTATTTGGGTT 654
Query 656 CAGAAACCGCAGATTTATGATTGGAAATGTTGAGTTCATCAGTATTGATGCCCAAGCTAT 715
|||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 655 CAGAAACCACAGATTTATGATTGGAAGTGTTGAGTTCATCAGTATTGATGCACAAGCTAT 714
Query 716 CGATGGGAATTCTAAAAAGGATCTGGCCTCAGAAGTTTGGAAGTTTGTACAAAATGTCTC 775
|||||||||| || |||||||||| || || |||||||||||||||||||||||||||||
Sbjct 715 CGATGGGAATCCTCAAAAGGATCTAGCATCCGAAGTTTGGAAGTTTGTACAAAATGTCTC 774
Query 776 CACC---G-AC-G-CACA-G--TCACATCCTAGAGTTTTATTGACCCACATCCCATTATA 826
||| | || | |||| | ||||||||||||||||| |||||||||||||| |||||
Sbjct 775 AACCGATGCACAGTCACATGACTCACATCCTAGAGTTTTGTTGACCCACATCCCGTTATA 834
Query 827 TCGGCCTGATCAAACCCCATGTGGCCCTCATCGTGGTAG-TTCTGTCATTGATCAGCGGT 885
|||||| |||||||||||||| |||||||| |||||| | ||||||||||||||||||||
Sbjct 835 TCGGCCCGATCAAACCCCATGCGGCCCTCACCGTGGT-GCTTCTGTCATTGATCAGCGGT 893
Query 886 TTTGGCGCCATTCTCAAGATCAAGAAGTAATATATCAAAATTATATCACTCCAGAATCAT 945
|||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 894 TTTGGCGCCATTTTCAAGATCAAGAAGTAATATACCAGAATTATATCACTCCAGAATCAT 953
Query 946 CTACGAAGTTACTGGAGTTGATCAAACCCATACTCGTTCTGTCTGGCCATGATCATGACC 1005
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 954 CTACGAAGTTATTGGAGTTGATCAAACCTATACTCGTTCTGTCTGGCCATGATCATGACC 1013
Query 1006 AGTGTACTGTAATCCACAAGTCGAAAGCAGGATCTGTAACTGAGCATACTTTAGGTACTG 1065
| || ||| ||| |||||| ||||||||||||||||||| ||||||||| ||||||||
Sbjct 1014 AATGCACTATAACCCACAAATCGAAAGCAGGATCTGTAAAAGAGCATACTGTAGGTACTA 1073
Query 1066 TAAGTTGGCAACAAGGAAATATACATCCGTCATTCATGCTATTATCTGTTCCCAAAGCCT 1125
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1074 TAAGCTGGCAACAAGGAAATATATATCCGTCATTCATGCTATTATCTGTTCCCAATGCCA 1133
Query 1126 TCCATCGAAACTCATCTGATCCAGATAAAATGTTACACACCCAATTATGCTTCCTTCCGA 1185
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1134 TCCATCAAAACTCATCTGATCTAGATAAAATGTTACACACCCAATTATGCTTCCTTCCGT 1193
Query 1186 GCCAATTATTCATTTACATGTGGTACCTTTCTCTATTCGTTATGTCCCTTCTTGCTCTCC 1245
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1194 GCCAGTTATTCATTTACATGTGGTACCTTTCTCTATTCGCTATGTCCCTTCTTGCTCTCC 1253
Query 1246 TTCTT-TGGCCAAATCATGGAATTAGCTTCTTAAACAACGCTGCAGACTGTATCTCAAAT 1304
|| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1254 TT-TTCTGGCCAAATCATGGAATAAGCTTCTTAAACAACGCTGCAGACTGTATCTCGAAT 1312
Query 1305 GTAATGAAGTCAAGCTTTTTAAGCAGCGTCACGAAGGAGAAGAACGAAGATGAAAACTGT 1364
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 1313 GTAATGAAGTCAAGCTTTTTAAGCAGCGTCACCAAGGAGAAGAATGAAGATGAGAACTGT 1372
Query 1365 GAGTATGAAATGGTATGGGACGCAGAAGGATCTATGCATCTTGTGAAGAAAGCTCTTCAA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 GAGTATGAAATGGTATGGGACGCAGAAGGATCTATGCATCTTGTGAAGAAAGCTCTTCAA 1432
Query 1425 ACTCCTGTGAAACGTCAAAGCGATAAACCTCTTGTAGAAAAGGGTAACGCGGTGATGAGA 1484
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1433 ACTCCTGTGAAACGTCAAAGCGATAAACCTCTTGTAGAAAAGGGTAACGCGGTGTTGAGA 1492
Query 1485 TCAGCGGCTAGAAAGAACGCTAGCGAACAGATTGAGCTTGTGATGGACTCAGATGTAAAT 1544
||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1493 TCAGCTGCTAGAAAAAACGCTAGCGAACAGATTGAGCTTGTGATGGACGCGGATGTAAAT 1552
Query 1545 GCAAGT-GCTGGTGGGTCTGATCCTCTGATGAGATCAGCATCAAAATCAAGAACAAAACT 1603
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 GCA-GTTGCTGGTGGGTCTGATCCTCTGATGAGATCAGCATCAAAATCAAGAACAAAACT 1611
Query 1604 TGTGATCCAGAGAGTGATACGTACAATCATGATGGTCATCGTCATTGCGGCGTTAAACGT 1663
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1612 TGTGATCCAGAGAGTGATACGTACAATCATGATGATCATCGTCATTGCGGCGTTAAACGT 1671
Query 1664 TCCCATTTACATGATGT-TGCTGTTCAAGGATTGGATTGAGCAGGAGTGATCAACTAAAG 1722
|||||||||||| || ||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct 1672 TCCCATTTACATC-TGGCTGCTGTTCAAGGATTGGGTTGAGCAGGAGTGATAAACTAGAG 1730
Query 1723 ATAAATCTTATTGACATGAAATTTTGGATTACGCAAACTATCATCTGTAGGATTTGTGGT 1782
|||||||| |||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1731 ATAAATCTCATTGGCATGAAATTTTGGACTAAGCAAACTATCATCTGTAGGATTTGTGGT 1790
Query 1783 GAAAAGTGAAAACTGTTGT---ATTATTAGAATATGAGAATCAAAAAAGACATGTTT-AG 1838
||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||
Sbjct 1791 GAAAAGTGAAAACTGTTGTTGTATTATTAGAATATGAGAATCAAAGGAGACATGTTTTAG 1850
Query 1839 TCTATATGGTTCAACATAAACCATAGACTTATTTATTTGGTCTTATT 1885
||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1851 TCTATATGGTTCAACATAA-CCATAGACTTATTTATTTGGTCTTATT 1896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71000216680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5