BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53720.1
Length=1770
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474506 jgi|Araly1|474506|fgenesh2_kg.1__4460__AT1G53720.1 2412 0.0
Ahg336830 jgi|Araly1|336830|fgenesh1_pg.C_scaffold_1003395 614 8e-175
Ahg924146 jgi|Araly1|924146|scaffold_105427.1 431 9e-120
> Ahg474506 jgi|Araly1|474506|fgenesh2_kg.1__4460__AT1G53720.1
Length=1581
Score = 2412 bits (1306), Expect = 0.0
Identities = 1499/1590 (94%), Gaps = 22/1590 (1%)
Strand=Plus/Plus
Query 65 TGCACCTCTCTTCTTCTCTCGCTCTCTGTTTCTGAGGTT--CTGCAAGAAGTAAAACATG 122
|||||||| |||||||||||| | |||||||||||||| | |||||||| |||||||
Sbjct 1 TGCACCTCCCTTCTTCTCTCG--CACTGTTTCTGAGGTTAAAT-CAAGAAGT-AAACATG 56
Query 123 TCAGTTCTTATTGTGACGAGCCTTGGTGATATAGTAATTGACCTTCACTCGGATAAATGC 182
|||||||||||||||||||||||||| ||||| |||||||||||| || || ||||||||
Sbjct 57 TCAGTTCTTATTGTGACGAGCCTTGGGGATATTGTAATTGACCTTTACCCGAATAAATGC 116
Query 183 CCTTTGACTTGCAAGAACTTCCTTAAGCTTTGCAAGATCAAGTACTACAATGGGTGTCTT 242
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 117 CCTTTGACCTGCAAGAACTTCCTCAAGCTTTGCAAGATCAAGTACTACAATGGGTGCCTT 176
Query 243 TTTCACACTGTGCAAAAGGATTTCACAGCACAGACTGGTGATCCAACTGGTACGGGAGCT 302
||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||
Sbjct 177 TTTCACACTGTGCAAAATGATTTCACTGCACAGACGGGTGATCCAACTGGCACGGGAGCT 236
Query 303 GGTGGAGATTCAATCTACAAATTTCTGTACGGTGAGCAGGCTCG-TTTTTACAAAGATGA 361
|||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct 237 GGTGGAGATTCAATCTACAAATTTCTGTACGGTGAGCAGGCTCGTTTTTTTC-GTGATGA 295
Query 362 GATTCATCTTGATTTAAAACATTCAAAGACCGGCACTGTTGCAATGGCCAGTGGTGGAGA 421
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 296 GATTCATCTTGATTTAAAACATTCGAAGACCGGCACTGTTGCAATGGCCAGTGGGGGAGA 355
Query 422 GAATCTCAATGCTTCCCAGTTCTATTTCACACTTCGTGATGATTTGGACTATCTTGATGG 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AAATCTCAATGCTTCCCAGTTCTATTTCACACTTCGTGATGATTTGGACTATCTTGATGG 415
Query 482 GAAACACACTGTGTTTGGACAGATTGCTGAGGGGTTTGACACTTTGACTAGGATAAATGA 541
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||
Sbjct 416 GAAACACACTGTGTTTGGGGAGATTGCCGAGGGGTTTGACACTTTGACTAGGATAAACGA 475
Query 542 AGCTTATGTTGATCCGAAGAACAGACCCTATAAGAACATTAGAATCAAGCACACACATAT 601
||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 476 AGCTTATGTTGATGCAAAGAACAGACCCTATAAAAACATTAGAATCAAGCACACACATAT 535
Query 602 ACTTGATGATCCATTTGATGATCCCCCACAGCTGGCTGAAATGATGCCAGATGCTTCCCC 661
|||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 536 ACTTGAAGATCCATTTGATGATCCTCCACAGCTGGCTGAGATGATACCAGATGCTTCCCC 595
Query 662 TGAAGGAAAACCGAAAGAAGAGGTCAAAGATGACGTGCGGCTTGAAGATGATTGGGTTCC 721
|||||||||||||| ||||||||| ||||||| || || ||||||||||||||||||||
Sbjct 596 CGAAGGAAAACCGAAGGAAGAGGTCGAAGATGATGTACGACTTGAAGATGATTGGGTTCC 655
Query 722 AATGGATGAAGAACTTGGTGCTCAGGAACTGGAGGAGGTTATCCGCGAAAAGGCAGCCCA 781
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 656 AATGGATGAAGAACTTGGTGTTCAGGAACTGGAGGAGGTTATCCGCGAAAAGGCTGCCCA 715
Query 782 TTCAAGTGCTGTTGTACTTGAAAGTATAGGAGATATCCCCGAGGCTGAGGTAAAACCTCC 841
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 716 TTCTAGTGCTGTTGTACTTGAAAGTATAGGAGATATCCCTGAGGCTGAGGTAAAACCTCC 775
Query 842 TGACAATGTGCTGTTCGTCTGCAAACTGAATCCAGTGACTGAGGATGAAGACCTCCATAC 901
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 776 TGACAATGTGCTGTTCGTCTGCAAACTGAATCCTGTGACTGAGGATGAGGACCTCCATAC 835
Query 902 CATTTTTTCACGCTTTGGAACCGTTGTATCGGCTGATGTAATCCGGGATTTCAAGACAGG 961
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 836 CATTTTTTCACGCTTTGGAACTGTTGTATCGGCTGATGTAATCCGGGATTTCAAGACAGG 895
Query 962 TGACAGTTTGTGCTATGCTTTTATAGAGTTTGAGAACAAGGAGTCATGCGAACAAGCGTA 1021
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 896 TGACAGTTTGTGCTATGCGTTTATAGAGTTTGAGAACAAGGAGGCATGCGAACAAGCGTA 955
Query 1022 CTTTAAGATGGACAATGCTCTGATCGATGATAGACGGATACATGTGGATTTCAGTCAGAG 1081
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 956 TTTTAAGATGGACAATGCTCTGATCGATGATAGACGAATACATGTGGATTTCAGTCAGAG 1015
Query 1082 TGTGTCCAAA-CTTTGGTCACAGTTCAGGCAAAAAGACTCCCAAAAGGGCAAAGGGAATG 1140
|||||| ||| ||||||||||||||| |||| ||||||||||||||||| ||||||||||
Sbjct 1016 TGTGTC-AAAGCTTTGGTCACAGTTCCGGCAGAAAGACTCCCAAAAGGGTAAAGGGAATG 1074
Query 1141 GGTGTTTCAAATGCGGCTCGACGGATCATATTGCCAAGGACTGTGTGGGTGGTC--C-GT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1075 GGTGTTTCAAATGCGGCTCGACGGATCATATTGCCAAGGACTGTGTGGGTGGTAATCAGT 1134
Query 1198 CTTCAAAGTTTATTGTAAAAGATCAAAACAGACAGCACGGAGGAGGTGAAGGCTATGAGA 1257
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1135 CTTCAAAGTTCATTGTAAAAGATCAAAACAGACAGCACGGAGGAGGTGAAGGCTATGATA 1194
Query 1258 TGGTGTTTGAGGGTGATGTGCATGAAACCCCCAAGC-ATA--ATAGTCATGAGAGGGAGA 1314
||||||||||||||||||||| ||||| ||||||| | | ||||||||||||||||||
Sbjct 1195 TGGTGTTTGAGGGTGATGTGCCTGAAATCCCCAAGAGAGAGCATAGTCATGAGAGGGAGA 1254
Query 1315 GGAGTGAGAAGATTCAGAGGAGAAGTCCTCATGGTAATGGGGAAGGCAAAAGACAG-CAC 1373
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1255 GGAGTGAGAAGATTCAGAGGAGAAGTCCTCATGGTAATGGGGAAGGCAAAAGAC-GTCAC 1313
Query 1374 AGAGATGAACGT-GATGATGGTAGAAGACAGCATGATCGGGAAGACGCACgagaactgga 1432
||||||||| || || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1314 AGAGATGAA-GTTGACGATGGTAGAAGACAGCATGATCGGGAAGACGCACGAGAAATGGA 1372
Query 1433 gaggaaacacagagagagaaaagaaagagagagtagggaagatgaagacagaagaagaag 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 GAGGAAACACAGAGAGAGAAAAGAAAGAGAGAGTAGGGAAGATGAAGACAGAAGAAGAAG 1432
Query 1493 aagacgccgtgaagag-tctagagataaagagagtcggagagagagagacgaagatgatc 1551
|| |||||| |||||| | | |||||||||||||||| |||||||||||||| |||||||
Sbjct 1433 AAAACGCCGAGAAGAGAT-TCGAGATAAAGAGAGTCGAAGAGAGAGAGACGATGATGATC 1491
Query 1552 atcggagtcatagagattataaagagaggagaagagagagagacgatagacatggaagag 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 ATCGGAGTCATAGAGATTATAAAGAGAGGAGAAGAGAGAGAGACGATAGACATGGAAGAG 1551
Query 1612 aagctagacatgagagaagggatagatgaa 1641
| || |||||||||||||||||||| ||||
Sbjct 1552 ACGCGAGACATGAGAGAAGGGATAGGTGAA 1581
> Ahg336830 jgi|Araly1|336830|fgenesh1_pg.C_scaffold_1003395
Length=2094
Score = 614 bits (332), Expect = 8e-175
Identities = 759/960 (79%), Gaps = 50/960 (5%)
Strand=Plus/Plus
Query 120 ATGTCAGTTCTTATT-GTGACGAGCCTTGGTGATATAGTAATTGACCTTC-ACTCGGATA 177
||||||||||||||| | ||| ||||| || |||||||| | ||| | || || | ||||
Sbjct 1 ATGTCAGTTCTTATTAG-GACAAGCCTAGGGGATATAGTGACTGATC-TCTACACAGATA 58
Query 178 AATG-CCCTTTGACTTGCAAGAACTTCCTTAAGCTTTGCAAG-ATCAAGTACTACAATGG 235
|| | |||| || ||||| || || || ||||| ||| | || ||||| ||||||||
Sbjct 59 AA-GCCCCTAAAACCTGCAATAATTTTCTCAAGCTATGC-CGTATGAAGTATTACAATGG 116
Query 236 GTGTCTTTTTCACACTGTGCAAAAGGATTTCACAGCACAGACTGGTGATCCAACTGGTAC 295
||| ||| | ||||| || |||||||| || |||| | || ||||||||||| || ||
Sbjct 117 GTGCCTTATCCACACAGT---AAAGGATTCCATAGCAGAAACAGGTGATCCAACAGGAAC 173
Query 296 -GGGAGCTGGTGGAGATTCAATCTACAAATTTC-TGTACGGTGAGCAGGCTC-GTTTTTA 352
||| |||||||||| ||||| |||||||||| || | ||||| || |||| ||| ||
Sbjct 174 AGGG-TCTGGTGGAGACTCAATATACAAATTTCTTG-AAGGTGACCATGCTCGGTTCTT- 230
Query 353 CAAAGATGAGATTCATCTTGATTTAAAACATTCAAAGACCGGCACTGTTGCAATGGCCAG 412
|| || |||||| | ||| || |||||||||||||| ||||||||||| |||| ||
Sbjct 231 CAGCGAAGAGATTTGCCCTGAATTGAAACATTCAAAGACTGGCACTGTTGCTATGGTTAG 290
Query 413 TGGTGGAGAGAATCTCAATGCTTCCCAGTTCTATTTCACACTTCGTGATGAT-TTGGACT 471
| ||| || ||||| |||||||||||||||||| |||||||| | |||||| || |||
Sbjct 291 TTCTGGTGAAAATCTGAATGCTTCCCAGTTCTATATCACACTTTGCGATGATCTT-GACC 349
Query 472 ATCTTGATGGGAAACACACTGTGTTTGGACAGATTG-CTGAGGGGTTTGACACTTTGACT 530
|||||||||||||||||||||||||||| || ||| | |||||||||||| |||||||
Sbjct 350 ATCTTGATGGGAAACACACTGTGTTTGGGGAGGTTGTC-GAGGGGTTTGACGTTTTGACT 408
Query 531 AGGATAAATGAAGCTTATGTTGATCCGAAGAACAGACCCTATAAGAACATTAGAATCA-A 589
|| || ||| || ||||||| ||||||||||||||| ||| ||||| ||||| | |
Sbjct 409 AGTCTAGCCAAAGTTTCTGTTGATGCGAAGAACAGACCCTGTAAAAACATAAGAAT-AGA 467
Query 590 GCACACACATATACTTGATGATCCATTTGATGATCCCCCACAGCTGGCTGAAATGATGCC 649
||||||| |||||||||| |||||||||||||||| |||||| ||||||||| |||| ||
Sbjct 468 GCACACATATATACTTGAAGATCCATTTGATGATCTCCCACAACTGGCTGAATTGATACC 527
Query 650 AGATGCTTCCCCTGAAGGAAAACCGAAAGAAGAGGTCAAAGATGACGTGCGGCTTGAAGA 709
|||| |||||||||| ||||||||||| |||||||||| |||||||| ||| || ||| |
Sbjct 528 AGATACTTCCCCTGAGGGAAAACCGAAGGAAGAGGTCACAGATGACGGGCGACTCGAATA 587
Query 710 TGATTGGGTTCCAATGGATGAAGAACTTGGTGCTCAGGAACTGGAGGAGGTTATCCGCGA 769
|||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| | |
Sbjct 588 TGATTGGGTTCCAACAGATGAAGAACTTGGTCCTCAGGAACTGGAGGAGGTCATCAACAA 647
Query 770 AAAGGCAGCCCATTCAAGTGCTGTTGTACTTGAAAGTATAGGAGATATCCCCGAGGCTGA 829
||| || |||||||||||||||||| ||||||||| || || ||||||||| |||||||
Sbjct 648 AAACGCTGCCCATTCAAGTGCTGTTTTACTTGAAACTAAAGAAGATATCCCTGAGGCTGT 707
Query 830 GGTAAAACCTCCT-GACAATGTGCTGTT-CGTCTGCAAACTGAATCCA-GTGACTGAGG- 885
|| | | || | | || | |||| || | | || ||||||| || ||||| |
Sbjct 708 GG-AGGAT-TC-TAG-CACTTTGCT-TTACATATGGGGTTTGAATCCTTGT-ACTGATGC 761
Query 886 ATGAAGACCTCCATACCATTTTTTCACGCTTTGGAACCGTTGTATCGGCT-GATGTAATC 944
| || | |||| | ||||||||||| ||||||||||| || | |||| | || || ||
Sbjct 762 A-GATGGCCTCAACACCATTTTTTCCCGCTTTGGAACAGTCATCTCGGTTCGA-GTCCTC 819
Query 945 CGGGATTTCAAGACAGGTGACAGTTT-GTGCTATGCTTTTATAGAGTTTGAGAACAAGGA 1003
|||||| |||||| ||||| || || | | | ||| || || ||||||| || |||
Sbjct 820 CGGGATCGCAAGACTGGTGAGAGCTTAG-GTTGTGCATTAATCCAGTTTGAAAATGAGGT 878
Query 1004 -GTCATGCGAACAAGC--GTACTT-TAAGATGGACAAT-GCT-CTGATCGATGATAGACG 1057
| || || || |||| || ||| | |||||| ||| | | || ||||||||||||||
Sbjct 879 TG-CAAGCAAAGAAGCCCGT-CTTGT--GATGGATAATTG-TACT-ATCGATGATAGACG 932
> Ahg924146 jgi|Araly1|924146|scaffold_105427.1
Length=1262
Score = 431 bits (233), Expect = 9e-120
Identities = 291/319 (91%), Gaps = 3/319 (1%)
Strand=Plus/Plus
Query 175 ATAAATGCCCTTTGACTTGCAAGAACTTCCTTAAGCTTTGCAAGATCAAGTACTACAATG 234
||||||| |||||||| ||||| ||||| || ||||| |||||||||||||||||||||
Sbjct 19 ATAAATGTCCTTTGACCTGCAACAACTTTCTCAAGCTCTGCAAGATCAAGTACTACAAT- 77
Query 235 GGTGTCTTTTTCACACTGTGCAAAAGGATTTCACAGCACAGACTGGTGATCCAACTGGTA 294
|||| || || |||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct 78 GGTGCCTCTTCCACACTGTGCAAAATGATTTCACAGCACAGACGGGTGATCCAACTGCCA 137
Query 295 CGGGAGCTGGTGGAGATTCAATCTACAAATTTCTGTACGGTGAGCAGGCTCG-TTTTTAC 353
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 138 CAGGAGCTGGTGGAGATTCAATCTACAAATTTCTGTACGGTGAGCAGGCTCGGTTTTTTG 197
Query 354 AAAGATGAGATTCATCTTGATTTAAAACATTCAAAGACCGGCACTGTTGCAATGGCCAGT 413
|||||||||||||| |||||||||||||||||||| |||| |||||||||||||| |
Sbjct 198 GC-GATGAGATTCATCTCGATTTAAAACATTCAAAGACTGGCATTGTTGCAATGGCCAAT 256
Query 414 GGTGGAGAGAATCTCAATGCTTCCCAGTTCTATTTCACACTTCGTGATGATTTGGACTAT 473
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 257 GGTGGAGAAAATCTGAATGCTTCCCAGTTCTATTTCACACTTCGTGATGATCTGGACTAT 316
Query 474 CTTGATGGGAAACACACTG 492
|||||||||||||||||||
Sbjct 317 CTTGATGGGAAACACACTG 335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66429387280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5