BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53730.2
Length=2471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474507 jgi|Araly1|474507|fgenesh2_kg.1__4461__AT1G53730.2 3795 0.0
Ahg478852 jgi|Araly1|478852|fgenesh2_kg.3__1553__AT3G14350.1 1541 0.0
Ahg477067 jgi|Araly1|477067|fgenesh2_kg.2__2197__AT1G78980.1 100 4e-20
> Ahg474507 jgi|Araly1|474507|fgenesh2_kg.1__4461__AT1G53730.2
Length=2402
Score = 3795 bits (2055), Expect = 0.0
Identities = 2306/2424 (95%), Gaps = 29/2424 (1%)
Strand=Plus/Plus
Query 55 TAGAGAGAGGAAGAAGATGAGGGAGAATTGGGCGGTGGTGGCTCTGTTTACACTATGCA- 113
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TAGAGAGAGGAAGAAGATGAGGGAGAATTGGGCGGTGGTGGCTCTGTTTACTCTATGCAT 60
Query 114 --TTGTAGGGTTTGAGCTTAGATTCATCCATGGAGCTACTGATGCATCAGACACTTCAGC 171
||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 61 TGTTGTAGGATTTGAGCTTAGATTCATCCATGGAGCCACAGATGCATCAGACACTTCAGC 120
Query 172 ATTGAACACATTGTTCAGTGGTATGCATTCTCCAGCTCAGCTAACACAATGGACTGCAGC 231
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 ATTGAACACATTGTTCAGTGGTATGCATTCTCCAGCTCAGCTAACACAGTGGACTGCAGC 180
Query 232 AGCTGGTGATCCTTGTGGCCAGAATTGGAGAGGCGTCACTTGTTCCGGCTCACGAGTTAC 291
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 181 AGCTGGTGATCCTTGTGGCCAGAATTGGAGAGGCGTAACTTGTTCTGGCTCTCGAGTTAC 240
Query 292 TCAAATAAAGTTGTCAGGTCTTGAGCTCTCTGGAACTCTTGGAGGATACATGCTTGATAA 351
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 TCAAATAAAGTTATCAGGTCTTGAGCTCTCTGGAACACTTGGAGGATACATGCTTGATAA 300
Query 352 ATTGACTTCTCTTACCGAGCTTGATCTAAGCAGCAATAATCTTGGAGGTGATTTACCATA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTGACTTCTCTTACCGAGCTTGATCTAAGCAGCAATAATCTTGGAGGTGATTTACCATA 360
Query 412 TCAGTTTCCTCCAAATCTGCAACGATTGAACCTTGCGAATAATCAATTCACTGGAGCTGC 471
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 361 TCAGTTTCCTCCAAATCTGCAACGATTGTATCTTGCGAATAATCAATTCACTGGAGCTGC 420
Query 472 TTCGTACTCACTTTCTCAGATTACACCACTTAAGTATCTCAATCTTGGTCACAATCAGTT 531
| |||||||| |||||||||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct 421 TGCGTACTCAATTTCTCAGATAACAACACTTAAGTATCTAAATCTTGGTCACAATCAGTT 480
Query 532 TAAGGGGCAGATAGCTATCGACTTCTCCAAGCTCGACTCTCTCACAACCTTGGACTTCTC 591
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 TAAGGGGCAGATAGCTATCGACTTCACCAAGCTCGACTCTCTCACAACCTTGGACTTCTC 540
Query 592 TTTCAATTCTTTCACGAACTCTTTACCGGCAACGTTTTCCTCTCTAACAAGTTTAAAATC 651
||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||
Sbjct 541 TTTCAATTCTTTCACGAACTCTTTACCGGGAACTTTTTCCTCTCTAACTAGTTTAAAATC 600
Query 652 ACTATACCTTCAGAACAATCAGTTCTCAGGCACAGTCGATGTCTTAGCCGGTCTTCCTCT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACTATACCTTCAGAACAATCAGTTCTCAGGCACAGTCGATGTCTTAGCCGGTCTTCCTCT 660
Query 712 TGAGACTCTGAACATTGCGAACAATGACTTCACGGGGTGGATCCCCAGTTCTTTAAAGGG 771
||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 661 TGAGACTCTAAACATTGCAAACAACGACTTCACTGGGTGGATCCCCAGTTCTTTAAAGGG 720
Query 772 CATCACATTAATAAAAGATGGCAACTCATTCAATACTGGACCTGCACCTCCACCACCACC 831
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 721 CATCACATTAATAAAAGACGGCAACTCATTCAATACTGGACCTGCGCCTCCACCACCACC 780
Query 832 TGGTACACCTCCTATCCGTGGCTCCCCGAGCCGTAAATCTGGAGGACGTGAAAGCCGGTC 891
||| |||||||| |||||||||||||| | ||||||| | ||||||||||||||||||||
Sbjct 781 TGGAACACCTCCAATCCGTGGCTCCCCAAACCGTAAACCCGGAGGACGTGAAAGCCGGTC 840
Query 892 TAGTGATGAGTCCACCAGAAATGGAGATTCCAAGAAATCAGGAATCGGAGCGGGGGCAAT 951
||||||||| |||||||||||||||||| |||||||||||||||||||||| || |||||
Sbjct 841 TAGTGATGATTCCACCAGAAATGGAGATACCAAGAAATCAGGAATCGGAGCTGGTGCAAT 900
Query 952 TGCGGGCATAATCATTTCATTGTTAGTAGTTACAGCTCTTCTTGTTGCTTTCTTCTTGTT 1011
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 901 TGCAGGCATAATCATTTCATTGTTAGTAGTTACAGCTCTTCTTGTGGCTTTCTTCTTGTT 960
Query 1012 CAGAAGaaaaaaaTCAAAGAGGTCATCACCCATGGACATTGAGAAAACCGATAACCAGCC 1071
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CAAAAGAAAAAAATCAAAGAGGTCATCACCCATGGACATTGAGAAAACCGATAACCAGCC 1020
Query 1072 TTTCACTCTTGCTTCAAACGACTTTCACGAAAACAATTCCATTCAGAGTTCTTCATCAGT 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTTCACTCTTGCTTCAAACGACTTTCACGAAAACAATTCCATTCAGAGTTCTTCATCAGT 1080
Query 1132 TGAGACAAAGAAACTGGACACTTCATTGTCTATTAATCTTCGACCTCCACCAATTGATAG 1191
|||||||||||| ||||| |||||||||||||||||||| || ||||||||| |||||||
Sbjct 1081 TGAGACAAAGAAGCTGGATACTTCATTGTCTATTAATCTCCGGCCTCCACCAGTTGATAG 1140
Query 1192 AAACAAATCATTTGATGATGAAGATTCGACAAGAAAGCCTATTGCTGTCAAGAAATCCAC 1251
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1141 AAACAAATCATTTGATGATGAAGATTCGACAAGAAAGCCTAGTACTGTCAAGAAATCCAC 1200
Query 1252 AGTGGTGGTTCCTTCAAATGTGAGACTCTATTCAGTTGCAGATCTCCAAATTGCTACTGG 1311
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GGTGGTGGTTCCTTCACATGTGAGACTCTATTCAGTTGCAGATCTCCAAATTGCTACTGG 1260
Query 1312 CAGTTTCAGCGTAGATAATCTTCTTGGAGAAGGGACTTTTGGACGAGTATACAGAGCTGA 1371
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CAGTTTTAGCGTAGATAATCTTCTTGGAGAAGGGACTTTTGGACGAGTATACAGAGCTGA 1320
Query 1372 GTTTGATGATGGAAAGGTTCTTGCTGTGAAGAAAATTGATTCGTCTGCTCTCCCACATGG 1431
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1321 GTTTGATGATGGAAAGGTTCTTGCTGTGAAGAAAATTGATTCGTCTGCTCTTCCACATGG 1380
Query 1432 CATGACCGATGATTTCATTGAAATGGTATCGAAAATAGCCAATTTGGATCATCCAAATGT 1491
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1381 CATGACCGATGATTTCATTGAAATGGTATCGAAAATCGCCAATTTGGATCATCCAAATGT 1440
Query 1492 GACCAAGCTTGTTGGTTACTGTGCTGAGCACGGACAACATCTCGTGGTCTATGAATTCCA 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GACCAAGCTTGTTGGTTACTGTGCTGAGCACGGACAACATCTCGTGGTCTATGAATTCCA 1500
Query 1552 CAAAAATGGATCATTACATGACTTCTTACACTTATCAGAAGAGGAAAGTAAAGCATTGGT 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 CAAAAATGGATCATTACATGACTTCTTACACTTATCAGAAGAGGAAAGTAAAGCATTGGT 1560
Query 1612 GTGGAATTCACGAGTCAAGATCGCTCTTGGGACTGCACGCGCATTGGAGTATCTGCATGA 1671
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1561 GTGGAATTCACGAGTCAAGATCGCTCTTGGGACTGCACGCTCATTGGAGTATCTGCATGA 1620
Query 1672 AGTTTGCTCACCGTCTATAGTGGACAAGAATATCAAATCAGCTAATATTTTACTCGATTC 1731
|||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 1621 AGTTTGTTCACCATCTATAGTTGACAAGAATATCAAATCAGCCAATATTTTACTCGACTC 1680
Query 1732 AGAGCTGAATCCTCACTTATCAGATTCT-GGTCTCGCAAGCTTCCTTCCCACAGCTAATG 1790
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1681 AGAGCTGAATCCTCACTTATCAGATT-TAGGTCTCGCAAGCTTCCTTCCCACAGCTAATG 1739
Query 1791 AGTTATTAAACCAAACCGATGAAGGGTATAGCGCACCTGAAGTATCAATGTCAGGCCAAT 1850
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1740 AGTTACTAAACCAAACCGATGAAGGGTATAGTGCACCTGAAGTATCAATGTCAGGCCAAT 1799
Query 1851 ATTCTTTGAAGAGTGACATTTACAGTTTTGGAGTAGTGATGCTTGAACTTTTAACTGGGA 1910
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1800 ATTCTTTGAAGAGCGACGTTTACAGTTTTGGAGTAGTGATGCTTGAACTTTTAACCGGGA 1859
Query 1911 GAAAACCATTTGACAGCAGCACAAGGTCAAGATCTGAGCAGTCACTGGTTCGATGGGCGA 1970
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1860 GAAAACCATTCGACAGCAGCACAAGGTCAAGATCTGAGCAGTCATTGGTTCGATGGGCGA 1919
Query 1971 CACCACAACTT-CACGACATTGATGCTTTAGCCAAAATGGTTGATCCAGCTCTTAAAGGG 2029
|||| ||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 CACCCCAA-TTACATGACATTGATGCTTTAGCCAAAATGGTTGATCCAGCTCTTAAAGGG 1978
Query 2030 CTTTATCCTGTCAAATCCCTTTCTCGATTTGCAGATGTTATCGCTCTCTGTGTCCAGCCG 2089
||||||||||| ||||| || ||||| ||||||||||||||||||||||| |||||||||
Sbjct 1979 CTTTATCCTGTTAAATCTCTGTCTCGGTTTGCAGATGTTATCGCTCTCTGCGTCCAGCCG 2038
Query 2090 GAGCCGGAGTTTAGACCACCAATGTCTGAAGTTGTGCAGGCTCTAGTTGTGTTAGTGCAG 2149
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2039 GAGCCGGAGTTTAGACCACCAATGTCTGAAGTTGTGCAGGCTCTGGTTGTGTTAGTGCAG 2098
Query 2150 AGAGCTAACATGAGCAAGAGAACTGTCGGAGTTGATCCATCGCAACGTGCTGGTAGTGCC 2209
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 2099 AGAGCTAACATGAGCAAGAGAACTGTCGGAGTTGATCCGTCGCAACGTTCTGGTAGTGCG 2158
Query 2210 GACACGACCAGTGATTACATGTAAATGCCTCTACCAAGAGAAAAGACAAACACTTTGCTC 2269
|| || |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2159 GAGACAACCAATGATTACATGTAAATTCCTCTCCCAAGAGAAAAGACAAACACTTTGCTC 2218
Query 2270 CGTCGGATGTTAATCATAGACAATTGGAAGATAGAAAAAAGCA-ACCTCATACATTGTAT 2328
|| | | || | | ||||||||| ||||| ||| || ||| ||||||||
Sbjct 2219 CG----A-G--AA--A-A-----TTGGAAGAT-GAAAA--GCACAC-TCACGCATTGTAT 2259
Query 2329 AATCCCATTGTTTTATTGTAATTGTATGTTCCAAAGGTGTAGCTTCTAGATCCTTTACAT 2388
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2260 AATCCCATTGTTTTATTGTAATTGTATGTTCCAAAGTTGTAGCTTCTAGATCCTCTACAT 2319
Query 2389 GAACAAAATTCTTTCTTGTAATCTTCTACATTGGTTCTATTTGGGCTTGGTTCAATTCTT 2448
||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 2320 GAACATAATTCTTTCTTGTTTTCTTCTAAATTGGTTCTATTTGGGCTTGGTTCAATTCTT 2379
Query 2449 GATCATCAACT-TGTTATCAATTT 2471
||||||||| | ||||||||||||
Sbjct 2380 GATCATCAA-TATGTTATCAATTT 2402
> Ahg478852 jgi|Araly1|478852|fgenesh2_kg.3__1553__AT3G14350.1
Length=2681
Score = 1541 bits (834), Expect = 0.0
Identities = 1749/2178 (80%), Gaps = 113/2178 (5%)
Strand=Plus/Plus
Query 61 GAGGAAGAAGATGAGGGAGAATTGGGCGGTGGTGGCTCTGTTTACACTATGCATTGTAGG 120
|||||||||||||| |||||| ||| ||| ||| |||| ||| ||| |||||||| ||
Sbjct 219 GAGGAAGAAGATGACTGAGAATCGGGTGGTTTTGGTTCTGCTTATACTCTGCATTGTTGG 278
Query 121 GTTTGAGCTTAGATTCATCCATGGAGCTACTGATGCATCAGACACTTCAGCATTGAACA- 179
|||||||| || ||||||||||||||||| ||| ||||||| |||||||| || ||||
Sbjct 279 GTTTGAGCCAAGTTTCATCCATGGAGCTACAGATTCATCAGATACTTCAGCGTTAAACAC 338
Query 180 CATTGTTCAG-TGGTATGCATTCTCCAGCTCAGCTAACACAATGGACTGCAGCAGCTGGT 238
|| ||||||| | ||| ||||||||| |||||| |||||||||| || ||| |||
Sbjct 339 CA-TGTTCAGCT-CCATGAATTCTCCAGGACAGCTATCACAATGGACAACATCAGGAGGT 396
Query 239 GATCCTTGTGGCCAGAATTGGAGAGGCGTCACTTGTTCCGGCTCACGAGTTACTCAAATA 298
|||||||||||||| || |||| |||| | ||||| || |||||| ||||||||||||||
Sbjct 397 GATCCTTGTGGCCAAAACTGGAAAGGCATAACTTGCTCTGGCTCAAGAGTTACTCAAATA 456
Query 299 AAGTTGTCAGGTCTT-GAGCTCTCTGGAACTCTTGGAGGATACATGCTTGATAAATTGAC 357
||||||||||||||| || || |||||| | ||| ||||| |||||||||||||||||
Sbjct 457 AAGTTGTCAGGTCTTGGA-CTTTCTGGATCACTT---GGATATATGCTTGATAAATTGAC 512
Query 358 TTCTCTTACCGAGCTTGATCTAAGCAGCAATAATC-TTGGAGGTGATTTACCATATCAGT 416
|||| |||| ||| |||||||||||| |||||| | ||||||| ||||| || ||||||
Sbjct 513 TTCTGTTACTGAGTTTGATCTAAGCAACAATAA-CATTGGAGGCGATTTGCCGTATCAGC 571
Query 417 TTCCTCCAAATC-TGCAACGATTGAACCTTGCGAATAATCAATTCACTGGAGCTGCTTC- 474
|||||||||| | || |||||||||| ||||| ||||| || || |||||| |||| ||
Sbjct 572 TTCCTCCAAA-CTTGGAACGATTGAATCTTGCTAATAACCAGTTAACTGGATCTGC-TCA 629
Query 475 GTACT-CACTTTCTCA-GATTACACCACTTAAGTATCTCAATCTTGGTCACAATCAGTTT 532
|| | || ||||| | ||| |||| |||||||| |||||||||| ||| || |||||
Sbjct 630 ATATTCCA-TTTCT-ATGATGGCACCTCTTAAGTACCTCAATCTTGCTCATAACCAGTTG 687
Query 533 AAGGGGCAGA-TAGCTATCGACTTCTCCAAGCTCGA-CTCTCTCACAACCTTGGACTTCT 590
|| ||| | ||||||| |||||| | || ||| | ||||||| | | ||||||| |||
Sbjct 688 AA---GCA-ACTAGCTATTGACTTCACAAAACTC-ACCTCTCTCTCTATCTTGGACCTCT 742
Query 591 CTTTCAATTCTTTCACGAACTCTTTACCGGC-AACGT-TT-T-CCTCTCTAACAAGTTTA 646
||| |||| |||| ||| || | || | ||| | || | |||||| || ||| |
Sbjct 743 CTTCCAATGCTTTTACGGGGTCGCT-CC--CAAAC-TCTTGTAGCTCTCTTACGAGTGCA 798
Query 647 AAATCACTATACCTTCAGAACAATCAGTTCTCAGGCA-CAGTCGATGT-CTTAGCCGGTC 704
|||||| | || ||||||||||||||||||||||||| || | ||| | | ||||| ||
Sbjct 799 AAATCAATTTATCTTCAGAACAATCAGTTCTCAGGCACCA-TTGATATAC-TAGCCACTC 856
Query 705 TTCCTCTTGAGACTCTGAACATTGCGAACAA-TGACTTCACGGGGTGGATCCCCA-GTTC 762
||||||| || | |||||| ||||| ||||| || ||||| || ||||| |||| |||
Sbjct 857 TTCCTCTCGAAAATCTGAATATTGCAAACAACCGA-TTCACAGGATGGAT-CCCATATTC 914
Query 763 TTT-AAAGGGCA-TCACATT-AATAAAAGATGGCAACTCATTCAATACTGGACCTGCACC 819
||| ||| |||| | || || | ||||||||| || | ||| ||| |||| ||||||||
Sbjct 915 TTTGAAA-GGCATTAAC-TTGCA-AAAAGATGGTAATTTATTAAATTCTGGGCCTGCACC 971
Query 820 TCCACCACCACCTGGTACACCTCCTATCCGTGGCTCCCCGA-GCCGTAAATCTGGAGGA- 877
||||||||| || ||||||||||| || || || || | ||| ||||| || | |
Sbjct 972 TCCACCACCTCCCGGTACACCTCCGATTAGTAAATCACCTACTCCG-AAATCCGG-GAAC 1029
Query 878 CGTGAAAGCCGGTCTAGTGATGAGTCCACCAGAAATGGAGATTCCAAG-AAATCAGGAAT 936
||||||| |||||| | || ||| |||| ||| | ||| ||| || |||||||| |
Sbjct 1030 CGTGAAACCCGGTCCAATGGTGATTCCAGCAGTAGCAAAGACTCC-AGCAAATCAGGGCT 1088
Query 937 CGGAGC-GG-GGGCAATTGCGGGCATAATCATTTCATTGTTAGTAGTTACAGCTCTTCTT 994
||||| || ||| || || || ||| |||||||||||||||| || ||||| ||
Sbjct 1089 TGGAGCTGGTGGG--ATAGCAGGAATAGTCATTTCATTGTTAGTTGTAACAGC-AGTC-- 1143
Query 995 GTTGCTTTCTTCTTGTTC-AGAAGaaaaaaaTCAAAGAGGTCATCACCCATGGACATT-- 1051
| |||||||||||| || || ||||||| ||||||| || ||||| ||| |||||||
Sbjct 1144 ATAGCTTTCTTCTTGGTCAAG-AGAAAAAGATCAAAGCGGGCATCATCCACGGACATTGA 1202
Query 1052 ---GA--GA-AA-ACCGA-TAACC-AGCCTTTCACT-CTTGCTTCAAACGACTTTCA-C- 1099
|| || || | | | ||||| | || || | | || || ||||| | |||||| |
Sbjct 1203 AAAGACTGATAATAAC-ATTAACCAACCCATT-A-TACTAGCGTCAAATGGCTTTCATCA 1259
Query 1100 -GAAAACAATTCCATTCAGAGTTCTTCATCAGTTGAGACAAAGAAACTGGACACTTCATT 1158
|| || || || | |||| | | ||| ||||||||||||||||||||| ||||||||
Sbjct 1260 TGAGAATAAGTCTGTACAGAATCCACCATTAGTTGAGACAAAGAAACTGGATACTTCATT 1319
Query 1159 GTCTATTAATCTTCGACCTCCACCAATTGATAGAAACAAATCATTTGATGATGAAGATTC 1218
||| || ||||| || ||||||||| ||| || | || || |||||||| || |||||
Sbjct 1320 GTCGATGAATCTACGTCCTCCACCAGCTGAGCGACATAAGTCGTTTGATGACGATGATTC 1379
Query 1219 GAC-A--AGAAAGCCTATTGCT-GTC-AAGAAATCCACAGTGGTGGTTCCTTCAAATGTG 1273
|| | ||||| || |||| | | | |||||| | | || || |||||||||||||||
Sbjct 1380 AACAATGAGAAAACCCATTG-TAG-CAAAGAAAGCTGCTGTTGTTGTTCCTTCAAATGTG 1437
Query 1274 AGACTC-TATTCAGTTGCAGATCTCCAAATTGCTACTGGCAGTTTCAGCGTAGATAATCT 1332
| || | ||| | ||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1438 A-ACACATATACGGTTGCAGATCTTCAAATAGCTACCAACAGTTTCAGCGTAGATAATCT 1496
Query 1333 TCTTGGAGAAGGGACTTTTGGACGAGTATACAGAGCTGAGTTTGATGATGGAAAGGTTCT 1392
|||||| |||||||| |||||| |||||||||||||| |||| || ||||||||||| ||
Sbjct 1497 TCTTGGTGAAGGGACATTTGGAAGAGTATACAGAGCTCAGTTAGAAGATGGAAAGGTACT 1556
Query 1393 TGCTGTGAAGAAAATTGATTCGTCTGCTC-TCCCACATGGCATGAC--C-GATGATTTCA 1448
||||||||||||||| || || ||||| | |||||| || || || | |||||||| |
Sbjct 1557 TGCTGTGAAGAAAATCGACTCATCTGCGCTTCCCAC--GG-AT-ACGGCTGATGATTTTA 1612
Query 1449 TTGAAATGGTATCGAAAATAGC-CAATTTGGATCATC-CAAATGTGACCAAGCTTGTTGG 1506
||||| |||||||||||||| | || ||||||| | |||||| || ||||||| |||
Sbjct 1613 CCGAAATAGTATCGAAAATAGCGC-ATCTGGATCA-CGAAAATGTCACAAAGCTTGATGG 1670
Query 1507 TTACTGTGCTGAGCACGGACAACATC-TCGTGGTCTATGAATTCCACAAAAATGGATCAT 1565
||||||| |||| ||||| ||||| | | ||||||||||| ||||| | ||| || ||||
Sbjct 1671 TTACTGTTCTGAACACGGGCAACA-CTTGGTGGTCTATGAGTTCCATAGAAACGGCTCAT 1729
Query 1566 TACATGACTTCTTACA-CTTATCAGAAGAGGAAAGTAAAGCATTGGTGTGGAATTCACGA 1624
| |||||||| ||||| ||| | ||||||||||| ||| | || | |||||| | ||
Sbjct 1730 TGCATGACTTTTTACATCTT-GCGGAAGAGGAAAGCAAACCCCTGATATGGAATCCCCGT 1788
Query 1625 GTCAAGATCGCTCTTGGGACTGCACGCGCATTGGAGTATC-TGCATGAAGTTTGCTCACC 1683
||||||||||||||||| |||||||| ||||||||||| | |||||||||||||||| ||
Sbjct 1789 GTCAAGATCGCTCTTGGCACTGCACGTGCATTGGAGTA-CTTGCATGAAGTTTGCTCTCC 1847
Query 1684 GTCTATAGTGGACAAGAATATCAAATCAGCTAATATTTTACTCGATTCAGAGCTGAATCC 1743
|||||||| ||||||| || |||||||| ||||||||||| || |||||||| |||||
Sbjct 1848 ATCTATAGTCCACAAGAACATTAAATCAGCAAATATTTTACTTGACTCAGAGCTAAATCC 1907
Query 1744 TCACTTATCAGATTCTGGTCTCGCAAGCTTCCTTCCCACAGCTAATGAGTTATTAAACCA 1803
||| | ||||| || |||||||| || ||||||||||| || |||||| || | || ||
Sbjct 1908 GCACCTCTCAGACTCAGGTCTCGCTAGTTTCCTTCCCACTGCAAATGAGCTACTGAATCA 1967
Query 1804 AACCGATGAAGGGTATAGCGCACCTG-AAGTATCAATGTCAGGCCAATATTCTTTGAAGA 1862
|| ||||||||| || || ||||| | || | ||||||||||||||||| ||||||||||
Sbjct 1968 AAACGATGAAGGATACAGTGCACCAGAAACT-TCAATGTCAGGCCAATACTCTTTGAAGA 2026
Query 1863 GTGACATTTACAGTTTTGGAGTAGTGATGCTTGAACTTTTAACTGGGAGAAAACCATTTG 1922
| || |||||||||||||||||||||||||||| |||||||| || ||||||||||| |
Sbjct 2027 GCGATGTTTACAGTTTTGGAGTAGTGATGCTTGAGCTTTTAACCGGAAGAAAACCATTCG 2086
Query 1923 ACAGCAGCACAAGGTCAAGATCTGAGCAGTCACTGGTTCGATGGGCGACACCACAACTTC 1982
| |||| |||||||||||||||| |||||| |||| ||||||| ||||| || ||||
Sbjct 2087 --A-CAGCTCAAGGTCAAGATCTGAACAGTCATTGGTAAGATGGGCAACACCTCAGCTTC 2143
Query 1983 ACGACATTGATGCTTTAGCCAAAATGGTTGATCCAGCTCTTAAAGGGCTTTATCCTGTCA 2042
|||||||||||||||| | ||||||||||||||||||||| ||||||||||| || || |
Sbjct 2144 ACGACATTGATGCTTTGGGCAAAATGGTTGATCCAGCTCTCAAAGGGCTTTACCCGGTTA 2203
Query 2043 AATCCCTTTCTCGATTTGCAGATGTTATCGCTCTCTGTGTCCAGCCGGAGCCGGAGTTTA 2102
|||| || || |||||||||||||||||||| || || || ||||||||||| |||||||
Sbjct 2204 AATCGCTCTCCCGATTTGCAGATGTTATCGCCCTTTGCGTTCAGCCGGAGCCAGAGTTTA 2263
Query 2103 GACCACCAATGTCTGAAGTTGTGCAGGCTCTAGTTGTGTTAGTGCAGAGAGCTAACATGA 2162
||||||| ||||||||||| ||||| || || ||||| || |||||||||||||||||||
Sbjct 2264 GACCACCGATGTCTGAAGTGGTGCAAGCGCTGGTTGTATTGGTGCAGAGAGCTAACATGA 2323
Query 2163 GCAAGAGAACTGTCGGAG 2180
||||||||||||||||||
Sbjct 2324 GCAAGAGAACTGTCGGAG 2341
> Ahg477067 jgi|Araly1|477067|fgenesh2_kg.2__2197__AT1G78980.1
Length=2371
Score = 100 bits (54), Expect = 4e-20
Identities = 207/279 (74%), Gaps = 17/279 (6%)
Strand=Plus/Plus
Query 1859 AAGAGTGACATTTACAGTTTTGGAGTAGTGATGCTT-GAACTTTTAACTGGGAGAAAACC 1917
||||||||| | ||||| ||||| || || ||| || || ||| | || || || ||
Sbjct 1886 AAGAGTGACGTCTACAGCTTTGGCGTCGTCATG-TTAGAGCTTCTCACCGGTCGAGTTCC 1944
Query 1918 ATTTGACAGCAGCACAAGGTCAAGATCTGAGCAG-TCACTGGTTCGATGGGCGACACCAC 1976
||||||| | || | || | |||| | ||| || || |||| || |||||||||||||
Sbjct 1945 ATTTGAC-GGAG-AGAA-GCCAAGGCCGGAG-AGATCGTTGGTACGGTGGGCGACACCAC 2000
Query 1977 AACTTCACGACATTGATGCTTTAGCCAAA-ATGGTTGATCCAGCTCTTAAAGGG-CTTTA 2034
||||||||||||||||||| || | | || || | ||||||||| || | || |||||
Sbjct 2001 AACTTCACGACATTGATGCATT-GTCGAATATAGCGGATCCAGCT-TTGCACGGACTTTA 2058
Query 2035 TCCTGTCAAA-TCCCTT-TCTCGATTTGCAGATGTTATCGC-TCTCTGTGTCCAGCCGGA 2091
|| |||| || || || |||| || || ||||||| | | ||||| ||| |||
Sbjct 2059 CCCAC-CAAAATCA-TTGTCAAGATTCGCCGACATTATCGCAT-TATGTGTACAGGTGGA 2115
Query 2092 GCCGGAGTTTAGACCACCAATGTCTGAAGTTGTGCAGGC 2130
|| ||||| ||||||| ||||| ||||||||| ||||
Sbjct 2116 ACCAGAGTTCCGACCACCGATGTCGGAAGTTGTGGAGGC 2154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93130649025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5