BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53760.1
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474510 jgi|Araly1|474510|fgenesh2_kg.1__4464__AT1G53760.1 1808 0.0
> Ahg474510 jgi|Araly1|474510|fgenesh2_kg.1__4464__AT1G53760.1
Length=1124
Score = 1808 bits (979), Expect = 0.0
Identities = 1082/1129 (96%), Gaps = 18/1129 (2%)
Strand=Plus/Plus
Query 1 GCGCCGCCGCTTCTTTTCGTCTTTCCTCGTGAAATATTTTAGGCTTTGTCGG--TC-TCG 57
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1 GCGCCGCCGCTTCTTTTCGTCTTTCCTCGTGAAATATTTTAGGCTTTGTCGGTCTCATCG 60
Query 58 ------TTACCTT--AAAGTTTCGATTTTTCCTTTGAATATAC-GAAACCCACGTCGTTT 108
||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CTATAATTACCTTAAAAAGTTTCGATTTTTCCTTTGAATATACATAAACCCACGTCGTTT 120
Query 109 AAAGCAATACCCAGATGACAAATTGACATTTCATAACTAAAGATCGGAGCTTTTTCGTAG 168
|||||||||||||||||||||||| | | || |||||||||||||||||||||||||||
Sbjct 121 AAAGCAATACCCAGATGACAAATTAATAAATCCTAACTAAAGATCGGAGCTTTTTCGTAG 180
Query 169 TTAAGTGATCATGAGAGCGAGATTGGTGGTTTTTCCGATCAAAGGGAAGAAATGGTGTTT 228
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 181 TTAAGTGATCATGAGAGCGAGATTGGTGGTTTTCCCGATTAAAGGGAAGAAGTGGTGTTT 240
Query 229 CAGCAGATCTGTTGACCCTTTCGCTGCTCAATCACCGTCTGGTGTTACTCCGACCACTGT 288
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGCAGATCTGTTGATCCTTTCGCTGCTCAATCACCGTCTGGTGTTACTCCGACCACTGT 300
Query 289 ACGAGGTTTATGGAAGAAGATATCATCTGAATCGAAACCCATCAATGCCAACGCAGAGCT 348
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 ACGAGGTTTATGGAAGAAAATATCATCTGAATCGAAACCCATCAATGCCAACGCGGAGCT 360
Query 349 TCTCGTCGATTTCATCTCTGACAAGATGAATAAAGCTTGGGTGGGTCTTGAGAAAGCGCC 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 TCTCGTCGATTTCATCTCTGACAAGATGAATAAAGCTTGGGTGGGTCTTGAGAAATCGCC 420
Query 409 TGATGGATCAATAAAGAACAAGATTCATGGGTTTGGATTGAAGCTTCTGGCTCGTGTTAA 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGATGGATCAATAAAGAACAAGATTCATGGGTTTGGATTGAAGCTTCTGGCTCGTGTTAA 480
Query 469 GCCTTCTGAGATTTTCTTGAAGTCTATATCTAAGGAGGTCACTTCTGTACAAGTCACTTA 528
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCCATCTGAGATTTTCTTGAAGTCTATATCTAAGGAGGTCACTTCTGTACAAGTCACTTA 540
Query 529 TCCTCCGAGTTTAGATCCTAGACTCGTACGCAGGAGACTACGGCACATTGCCATGAGTGG 588
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 TCCTCCGAGTTTAGATCCTAGACTCGTACGTAGGAGACTACGGCACATTGCCATGAGTGG 600
Query 589 AACAATCCTGCACAAGAAGTACCTAGTTGGTTCAGTTACTTTGCTTCCATTGACCAGTGC 648
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 601 AACAATCCTGCACAAGAAGTACCTAGTTGGTTCAGTAACTTTGCTTCCATTGACCAGTGC 660
Query 649 ATTTATGGTATTGCCATTACCAAACATACCATTCTTCTGGGTCTTATTCCGCACATATTC 708
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATTCATGGTATTGCCATTACCAAACATACCATTCTTCTGGGTCTTATTCCGCACATATTC 720
Query 709 TCACTGGCGGGCTCTTCAGGGAAGTGAGAAGCTGCTTAAGCTCATCTCAAACGAGGCAAA 768
||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 721 TCACTGGAGGGCTCTTCAGGGAAGTGAGAAGCTGCTTAAGCTTATCTCAAACGAGTCAAA 780
Query 769 TCCTGATAAACCAGACTCAACTGATGATGCAGATGAAAGCAAGAACAGCAACACCAAGCC 828
|||||||||| |||||||||||||||||||||||||||||||||||| ||| | | |||
Sbjct 781 TCCTGATAAATCAGACTCAACTGATGATGCAGATGAAAGCAAGAACAACAAGA--A-GCC 837
Query 829 GGAACAAAAATCT-CAATCTCCCACTTGTATTTTGCTTCCATCGGAAGAGTTATATCAGC 887
||||||||||| | ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 838 GGAACAAAAAT-TGCAATCTCCCACATGTATTTTGCTTCCATCAGAAGAGTTATATCAGC 896
Query 888 TAATTCGTGAAGCTAGCGAGGAAGGACTCGACGAGGCGACCATAATAGAGATTTGCAAAT 947
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 897 TAATTCGTGAAGCTAGCGAGGAAGGACTCGACGAGGCGACCATAGTAGAGATTTGCAAAT 956
Query 948 CCTTTGATCTCAATAAGAACGATGTTCTTAAATATCGCAATCTAGTCTAACTCTTTTGGC 1007
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 957 CTTTTGATCTCAATAAGAACGATGTTCTTAAATATCGCAATCTAGTCTAACTATTTTGGC 1016
Query 1008 ATTTTAGGCTTCTTTTTTAGAACATAATTTTAGCTGTTTGAAGCTATAACTTACGCTCCA 1067
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1017 ATTTTAGGCTTCTTTTTTAGAACCTAATTTTAGCTGTTTGAAGCTATAACTTACGCTCCA 1076
Query 1068 ATTCttttttttttttGTCTTTTGATTCCTTGTTGCTTTAAAAACTTCT 1116
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1077 ATTCTTTTTTTTTTT-GTCTTTTGATTCCTTGTTGCTTTAAAAACTTCT 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43460125380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5