BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53770.2
Length=2005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474511 jgi|Araly1|474511|fgenesh2_kg.1__4465__AT1G53770.1 2076 0.0
Ahg920643 jgi|Araly1|920643|scaffold_101924.1 248 1e-64
> Ahg474511 jgi|Araly1|474511|fgenesh2_kg.1__4465__AT1G53770.1
Length=1856
Score = 2076 bits (1124), Expect = 0.0
Identities = 1232/1286 (96%), Gaps = 0/1286 (0%)
Strand=Plus/Plus
Query 30 AACGACTGCGTCACTTCATCAATGGTGAAAGTTTCCTCGTCGACGACTTCTTCATCGTCA 89
||||||||||| ||||||||||||||||||| |||||||||| | ||||||| ||||||
Sbjct 1 AACGACTGCGTTACTTCATCAATGGTGAAAGATTCCTCGTCGGTGTCTTCTTCGTCGTCA 60
Query 90 TCGTCATCTCCAGATGAAGAAAGCGATCTCCAGAATCTCCTCGAGGAATCAGATTCTCAA 149
| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 61 TTGTCATCTCCAGATGAAGAAAGCGATCTCCACAATCTTCTCGATGAATCAGATTCTCAA 120
Query 150 ATCGACCAATTTCGTATCAGCGACGAGGCGGCAGAGCAACGACCTACCTTCGATGTGGAG 209
||||||||||||||| | ||||||| |||||| || ||||||||||||||||||||||||
Sbjct 121 ATCGACCAATTTCGTGTAAGCGACGCGGCGGCTGAACAACGACCTACCTTCGATGTGGAG 180
Query 210 AGTCTCCGATCACGTTTACGACGGAGTTTTAAGCTCAATCTCACTAAGAAACAGTCCATT 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTCTCCGATCACGTTTACGACGGAGTTTTAAGCTCAATCTCACTAAGAAACAGTCCATT 240
Query 270 TTTATCTTCCTCCCTATCGTCATCATCCTCATCTACTTATCTACCGATTTCAGCAATTAC 329
|||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 241 GTTATCTTCCTTCCTATCGTCATCATCCTCATTTACTTATCTACTGATTTCAGCAATTAC 300
Query 330 TTCTCCGTCAAAGTTCCTAATTCTGCGTTCCGGTCAAATACATTAACGGGTCGGGTTCAT 389
|||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| ||||
Sbjct 301 TTCTCCGTCAGAGTTCCTGATTCTGTGTTCCGGTCAAATACATTAACGGGTCGGGCTCAT 360
Query 390 GAATCGGATCTTCAAGCACTGTATCTTCTCAGGAAGCAAGAGAGCGATCTCTTCTCTATC 449
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 GAATCGGATCTTCAAGCACTGTATCTTCTCAGGAAGCAAGAGAGCGATCTCTTCTCTACC 420
Query 450 TGGAACCACACTGTATCAAATTTATCAACGATCGACGACGTGAAATCTGCAGTTTTCCGG 509
|||||||| ||| |||| ||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 421 TGGAACCATACTTTATCGAATTTATCAACAATCGAAGACGTGAAGTCTGCAGTTTTCCGG 480
Query 510 CAGATTTCGTTGAATAGACAGATCCAAAATGCATTACTATCGCCGCATAAAACTGGAAAT 569
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 481 CAGATTTCGTTGAATAGGCAGATCCAAAATGCATTACTCTCTCCGCATAAAACTGGAAAT 540
Query 570 GTTGATATCGGTGGATCATCAGATGGTTACTTCGCCGGCGGAAGTTGCCGGAAAGTGGAT 629
||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 GTTGAAATCGGTGGTTCATCAGATGTTTACTTCGCCGGCGGAAGTTGCCGGAAAGTGGAT 600
Query 630 CAGAAGTTGAATGGGAGGAAGACGATTCAATGGAAGCCGAGGCCGGATAAGTTTCTATTC 689
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 CAGAAGTTGAATGGGAGGAAGACGATTCAATGGAAGCCGAGACCGGATAAGTTTCTATTC 660
Query 690 GCCATTTGTTTGTCTGGTCAAATGAGTAACCACTTGATTTGCTTGGAGAAGCATATGTTC 749
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 GCCATTTGTTTGTCTGGTCAAATGAGTAATCACTTGATTTGCTTGGAGAAGCATATGTTC 720
Query 750 TTTGCAGCATTGCTGAAACGTGTTCTTGTGATCCCTAGTCATAGATTTGATTATCATTAC 809
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 721 TTTGCAGCATTGCTGAAACGCGTTCTTGTGATCCCTAGTCATAGATTTGATTACCATTAC 780
Query 810 AGTAGAATCATCGATATTGATCGAATCAATACTTGTTTGGGAAGGACTGTTGTGGTTTCT 869
|||||||| |||||||||||||||||||||||||||||||| |||| ||| |||||||||
Sbjct 781 AGTAGAATTATCGATATTGATCGAATCAATACTTGTTTGGGGAGGAATGTAGTGGTTTCT 840
Query 870 TTTGAGGAGTTTTGGAAGAAGGATAAGAATAGGAAGAAGCATCATCATGTTCATATTAAT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTTGAGGAGTTTTGGAAGAAGGATAAGAATAGGAAGAAGCATCATCATGTTCATATTAAT 900
Query 930 AGATTCATATGTTACTTCTCGAAACCGGAACCGTGTTATGTAGATAAAGAGCATATTACA 989
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGATTCATATGCTACTTCTCGAAACCGGAACCGTGTTATGTAGATAAAGAGCATATTACA 960
Query 990 AAGTTGAAAGCTTTGGGGATCACTGTTGGAGGGAAGCTAGACACACCATGGGAAGAAGAT 1049
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 961 AAGTTAAAAGCTTTGGGGATCACTATTGGAGGGAAGCTAGACACACCATGGGAAGAAGAT 1020
Query 1050 ATTGCGAGGCCAAGCAACAAGACAGCTGAGGAAGTGGAGGCTAATTTTAGATCAGATGAC 1109
|||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1021 ATTGCGAGTCCAAGCAACAAGACAGCTGAGGAAGTGGAGACTAATTTCAGATCAGATGAC 1080
Query 1110 GATGTTATTGCGATTGGGGATGTGTTCTATGCTAATGTTGAGAGAGAGTGGGTGATGCAG 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GATGTTATTGCGATTGGGGATGTGTTCTATGCTAATGTTGAGAGAGAGTGGGTGATGCAG 1140
Query 1170 CCTGGTGGTCCTGTTGCTCACAAGTGCAGAACTTTGATTGAACCAAACCGGCTTATTTTA 1229
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1141 CCTGGTGGTCCTGTGGCTCACAAGTGCAGGACTTTGATTGAACCAAACCGGCTTATTTTG 1200
Query 1230 CTCACTGCACAGAGATTTATCCAGACTTTCCTTGGCAAGAACTACATTGCTCTTCATTTC 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CTCACTGCACAGAGATTTATCCAGACTTTCCTTGGCAAGAACTACATTGCTCTTCATTTC 1260
Query 1290 CGCAGGCATGGATTCTTGAAGTTTTG 1315
|| |||||||||||||||||||||||
Sbjct 1261 CGTAGGCATGGATTCTTGAAGTTTTG 1286
Score = 856 bits (463), Expect = 0.0
Identities = 540/575 (94%), Gaps = 13/575 (2%)
Strand=Plus/Plus
Query 1429 GTAATGCCAAGAATCCAAGTTGCTTTTTCCCCATTCCTCAAGCTGCTAGCTGCATCACTC 1488
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1286 GTAATGCCAAGAATCCAAGTTGCTTTTACCCCATTCCTCAAGCTGCTAACTGCATCACTC 1345
Query 1489 GTCTGATTGAGAAGGTCGAGGCACCGGTTTTATACCTTTCTACTGATGCAGCCGAAAGCG 1548
| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1346 GACTGATTGAGAAGGTCGAGGCACCAGTTATATACCTTTCTACTGATGCAGCCGAAAGCG 1405
Query 1549 AAACTGGTCTGCTACAATCACTGTTGATACTGAATGGAAAGACTGTCCCCCTTGTGAAAC 1608
||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |
Sbjct 1406 AAACTGGTCTGCTACAATCGCTGTTGATCCTGAATGGAAAGACTATCCCCCTTGTGAAGC 1465
Query 1609 GACCAGCTCGTGATTCAGCTGAGAAATGGGATGCATTGTTATACAGACATGGTCTCGAGG 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 GACCAGCTCGTGATTCAGCTGAGAAATGGGATGCATTGTTATACAGACATGGTCTCGAGG 1525
Query 1669 GCGACTCACAGGTGGAAGCAATGTTGGATAAGACGATATGCGCATTGTCAAGCGTGTTCA 1728
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1526 GTGACTCACAGGTGGAAGCAATGTTGGATAAGACGATATGCGCAATGTCAAGCGTGTTCA 1585
Query 1729 TTGGTGCCTCGGGCTCAACTTTTACAGAGGATATCTTAAGACTCAGAAAAGATTGGGGAA 1788
||||||||||||| || |||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1586 TTGGTGCCTCGGGTTCCACTTTTACAGAGGATATCCTCAGACTCAGAAAAGATTGGGGAA 1645
Query 1789 CCGCTTCAGAATGCGATGAGTATCTCTGCGCAAACGAGCAGCCTAATTTTATAGCAGATC 1848
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1646 CCGCTTCAGAATGCGATGAGTATCTCTGCGCAAACGAGCAGCCTAATTTTGTAGCAGATC 1705
Query 1849 ATGAATAAAAAGATTAACACGTAAATTAGTCTCTGTCTTGTGA--GT---T-CTCATCAC 1902
|||||||||| |||||||||| ||| ||||||||||||||||| || | |||||||
Sbjct 1706 ATGAATAAAA-GATTAACACGCAAACTAGTCTCTGTCTTGTGATTGTGAGTTCTCATCAT 1764
Query 1903 AAAACAGCCTAATTGTCTTCTTCTTTATGTGCATAGTTTACTAGTG-T--ATATCATACA 1959
||| |||||||||| ||||| ||||| ||||||||||||||||||| | ||||||||||
Sbjct 1765 AAA-CAGCCTAATTCTCTTCCTCTTT-TGTGCATAGTTTACTAGTGATGTATATCATACA 1822
Query 1960 GTAAAAGCCATGCTACAGTTTCTTCTAATATAATC 1994
|||| |||||||||||||||||||||||||||||
Sbjct 1823 ATAAA-GCCATGCTACAGTTTCTTCTAATATAATC 1856
> Ahg920643 jgi|Araly1|920643|scaffold_101924.1
Length=1797
Score = 248 bits (134), Expect = 1e-64
Identities = 525/709 (74%), Gaps = 45/709 (6%)
Strand=Plus/Plus
Query 621 AAA-GTGGATCAGAAGTTGAATGG-GAGGAAGACGATTC-AATGGAAGCCGAGGCCGGAT 677
||| || |||||||||||| ||| | |||| |||| || ||||||||||||| || |||
Sbjct 641 AAAGGTAGATCAGAAGTTG-TTGGAGCGGAAAACGA-TCGAATGGAAGCCGAGACCAGAT 698
Query 678 AAGTTTCTATTCGCCATTTGTTTGTCTGGTCAAATGAGTAACCACTTGATTTGCTTGGAG 737
||||| || || || || ||| | || ||||||||||||||||||||||||||||| |||
Sbjct 699 AAGTTCCTTTTTGCTATCTGTCTCTCAGGTCAAATGAGTAACCACTTGATTTGCTTAGAG 758
Query 738 AAGCATATGTTCTTTGCAGCATTGCTGAAACGTGTTCTTGTGATCCCTAG-TCATA-GAT 795
|| |||||||||||||| || ||||| | || ||||| ||||| || || || || | |
Sbjct 759 AAACATATGTTCTTTGCTGCGCTGCTGGATCGAGTTCTCGTGATTCCAAGCTC-TAAG-T 816
Query 796 TTGATTATCATTAC-AGTAGAATCATCGATATTGATCGAATCAATACTTGTTTGGGAAGG 854
||||||| || || | |||| | || ||||| || || || ||||| || ||||||||
Sbjct 817 TTGATTACCAGTATGA-TAGAGTGATAGATATAGAGCGGATTAATACGTGCTTGGGAAGA 875
Query 855 ACTGTTGTGGTTTCTTTTGAGGAGTTTTGGAAGAAGGATAAGAATAGGAAGAAGCATCAT 914
|||||||| |||||||||| |||| ||| || || || || |||||| | |
Sbjct 876 ACTGTTGTCATTTCTTTTGATCAGTTC---AAGGAG-ATT-GA-TAAGAAGAA--A--A- 924
Query 915 CATGTTCATATTAATA-GATTCATATGTTACTTCTCGAAA-CCGGAACCGTGTTATGTAG 972
||| ||| ||| | | | ||||| ||||||||||| | || | || |||||||| |
Sbjct 925 -ATGCTCACATTGACACG-TTCATCTGTTACTTCTC-ATCGCCACAGCCTTGTTATGTGG 981
Query 973 ATAAAGAGCATATTACA-AAGTTGAAAGCTTTGGGGATCACTGTTGGAGGGAAGCTAGAC 1031
|| | || ||||| | | ||| | || | |||||| | | |||| |||||||| ||
Sbjct 982 ATGAGGATCATATCA-AGAAGCTCAAGGGATTGGGGGTTTCCATTGGTGGGAAGCTTGAG 1040
Query 1032 ACACCATGGGAA-GAAGATATTGCGAGGCCAAGC-AA-CAAGACAGCTGAGGAAGTGGAG 1088
| || ||| | |||||||| || ||||| | || | | || || | || || | |
Sbjct 1041 GCTCCTTGG-ATTGAAGATATAAAGAAGCCAA-CTAAGCGA-ACTTCTCAAGAGGTAGTG 1097
Query 1089 GCTAATTTTA-GATCAGATGACGATGTTATTGCGATTGGGGATGTGTTCTATGCTAATGT 1147
| || |||| | || ||||| | ||| || || || |||||||| ||||||||| || |
Sbjct 1098 GAAAAGTTTAAG-TCTGATGATGGTGTGATCGCCATAGGGGATGTCTTCTATGCTGATAT 1156
Query 1148 TGAG-AGAGAGTGGGTGATGCAGCCTGGTGGTCCTGTTGCTCACAAGTGCAGAACTTTGA 1206
||| | ||| | |||||||||||||||||| || | |||||| || | ||| |||
Sbjct 1157 GGAGCA-AGATTTGGTGATGCAGCCTGGTGGACCCATCAATCACAAATGTAAAACACTGA 1215
Query 1207 TTGAACCAAACCGGCTTATTTTACTCACTGCACAGAGATTTATCCAGACTTTCCTT-GGC 1265
| ||||| | |||| ||||| | || |||||| |||| |||||||| ||| || ||
Sbjct 1216 TCGAACCCAGTAGGCTCATTTTGGTGACGGCACAGCGATTCATCCAGACATTC-TTAGGA 1274
Query 1266 AAGAACTACAT-TGCTCTTCATTTCCGCAGGCATGGATTC-TTGAAGTT 1312
||||| | ||| | | |||||| |||| || ||||| ||| || |||||
Sbjct 1275 AAGAATTTCATCT-CGCTTCATCTCCGTAGACATGGGTTCCTT-AAGTT 1321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75380594855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5