BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53780.2
Length=2114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336830 jgi|Araly1|336830|fgenesh1_pg.C_scaffold_1003395 1572 0.0
Ahg923937 jgi|Araly1|923937|scaffold_105218.1 1570 0.0
> Ahg336830 jgi|Araly1|336830|fgenesh1_pg.C_scaffold_1003395
Length=2094
Score = 1572 bits (851), Expect = 0.0
Identities = 1026/1110 (92%), Gaps = 14/1110 (1%)
Strand=Plus/Plus
Query 799 ATACTGGTTTAGCTCCTCCCAATCAATGGGATCTTGTATCTGATAAGCAAATGA-TGCAA 857
||||||| ||| ||| ||||| |||||||||||| || ||||||| || |||| ||
Sbjct 989 ATACTGGGTTATCTCTTCCCAGTCAATGGGATCTCATAGCTGATAAACAGATGATTG-TT 1047
Query 858 GAGGAGCAACCTCTGCTTGTTGCGACATGCACACAGATAATCAGTCCAAACACTGAAGAT 917
|| ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1048 GACGAGCAGCCTCTGCATGTTGCGACATGCACACAGATAATCAGTCCAAATACTGAAGAC 1107
Query 918 GCAAAGTATGTCGTTGATATCAAAAAGATAGGCAAGTATGTTGTTGGACTTGGCGATAAA 977
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1108 GCAAAGTATGTCGTTGATATGGAAAAGATAGGCAAGTTTGTTGTTGGACTTGGCGATAAA 1167
Query 978 GCTTCTCCCACTGACATAGAAGCAGGAATGCGTGTGGGAGTTGATCA-GAAGAAATATCA 1036
||||||||||||| ||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 1168 TCTTCTCCCACTGAGATAGAAGTAGGAATGCGTGTGGGAGTTGAT-AGGAAGAAATATCA 1226
Query 1037 GATACAGATTCCTCTACCTCCAAAGATTGATCCTAGTG-TGACCATGATGACGGTTGAAG 1095
|||||||||||||||||||||||||| ||||||| ||| | | |||||||||||||||||
Sbjct 1227 GATACAGATTCCTCTACCTCCAAAGACTGATCCTCGTGCT-ATCATGATGACGGTTGAAG 1285
Query 1096 AGAAACCTGATGCAACTTACAGTGATATCGGTGGC--TGCAAGGAGCAGATTGAGAAGAT 1153
||||||| || ||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1286 AGAAACCGGACATAACTTACTGTGATATCGGTGGCTGTGCAAGGAGCAGATTGAGAAGAT 1345
Query 1154 TAGAGA-G---GTCGTTGAACTGCCAATGCTTCATCCAGAGAAATTTGTGAGGCTTGGAA 1209
|||||| | || |||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1346 TAGAGAGGTATGTTGTTGAACTACCAATGCTTCATCCAGAGAAATTTGTGAAGCTTGGAA 1405
Query 1210 TAGATCCTCCCAAGGGTGTTCTTTGCTATGGTCCTCCTGGTAGC-GGAAAAACCCTTGTC 1268
|||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||||
Sbjct 1406 TAGATCCTCCCAAGGGCGTTCTTTGCTATGGTCCTCCGGGTA-CTGGAAAAACCCTTGTG 1464
Query 1269 GCTAGAGCTGTGGCGAATAGAACTGGTGCTTGCTTTATCAGGGTTGTTGGCAGTGAGCTC 1328
||||||||||| || |||||||| |||||||||||||||||| || ||||||||||||||
Sbjct 1465 GCTAGAGCTGTAGCTAATAGAACCGGTGCTTGCTTTATCAGGATTATTGGCAGTGAGCTC 1524
Query 1329 GTTCAGAAGTACATTGGTGAAGGAGCTAGGATGGTTCGTGAACTGTTTCAGATGGCACGG 1388
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1525 GTTCAGAAGTACATCGGTGAAGGAGCAAGGATGGTTCGTGAACTGTTTCAGATGGCACGC 1584
Query 1389 TCAAAGAAAGCTTGCATTTTGTTCTTTGACGAAATTGATGCCATTGGCGGTGCAAGATTT 1448
|||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 1585 TCAAAGAAAGCTTGCATTTTGTTCATTGACGAAATCGATGCCATTGGTGGTGCAAGATTT 1644
Query 1449 GATGACGGTGTAGGCAGTGATAATGAAGTCCAACGTACCATGCTTGAGATTTTGTATCAG 1508
||||||||||||||| |||||||||||||||||||||| |||||||||||| || |||||
Sbjct 1645 GATGACGGTGTAGGCGGTGATAATGAAGTCCAACGTACTATGCTTGAGATTGTGAATCAG 1704
Query 1509 CTTGATGGGTTTGACGCACGTGGTAACATCAAGGTTCTTATGGCAACAAACAGGCCTGAC 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1705 CTTGATGGGTTTGACGCACGTGGTAACATCAAGGTTCTTATGGCAACAAACAGGCCTGAC 1764
Query 1569 ATACTAGACCCAGCTCTTTTACGTCCTGGACGTCTTGACCGCAAGGTTGAGTTTTGTCTG 1628
||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1765 ATACTGGACCCTGCTCTTTTACGTCCTGGACGTCTTGACCGCAAGATTGAGTTTTGTCTG 1824
Query 1629 CCTGATCTGGAGGGCAGAACACAGATCTTCAAGATTCACACACGAACAATGAGTTGTGAA 1688
|||||||||||| |||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 1825 CCTGATCTGGAGAGCAGAACACAGATCTTCAAGATTCACACACGAACCATGAACTGCGAA 1884
Query 1689 AGAGACATCCGGTTTGAACTCCTTGCTGGCCTCTGCCCAAACTCAACCGGAGCTGATATC 1748
||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1885 AGAGACATCCGGTTTGAACTCCTTGCTGGTCTCTGCCCAAATTCAACAGGAGCTGATATC 1944
Query 1749 AGAAGTGTATGCATAGAAGCCGGAATGTATGCAATCGGAGCTAGGAGAAAGTCTGTGACT 1808
|||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||| |
Sbjct 1945 AGAAGTGTGTGCATAGAAGCCGGAATGTATGCAATAGGAGCTAGGAGAAAGGCTGTGAGT 2004
Query 1809 GAGAAGGACTTTCTGGACGCAGTGAACAAAGTTGTTAAAGGTTATCAAAAGTTCAGTGCA 1868
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2005 GAGAAAGACTTTCTGGACGCAGTGAACAAAGTGGTTAAAGGCTATCAAAAGTTCAGTGCA 2064
Query 1869 ACACCCAAGTATATGGCCTACTACATTTAG 1898
|| |||||||||||||||||||||||||||
Sbjct 2065 ACTCCCAAGTATATGGCCTACTACATTTAG 2094
> Ahg923937 jgi|Araly1|923937|scaffold_105218.1
Length=1321
Score = 1570 bits (850), Expect = 0.0
Identities = 1100/1219 (90%), Gaps = 24/1219 (2%)
Strand=Plus/Plus
Query 709 AGGAGCCTTACTCTGCACGC-ATAAAGAAAGTAGAGAAAGAAATCAATGAGCTCGCCGAG 767
||| |||||||||||||| | || |||||||| ||||||||||| || || |||||| ||
Sbjct 113 AGG-GCCTTACTCTGCAC-CTATCAAGAAAGTGGAGAAAGAAATTAAGGATCTCGCCAAG 170
Query 768 AAGATCTGCAATC--T-TGGTATCAAGGAGTCCGATACTGGTTTAGCTCCTCCCAATCAA 824
|||||| | ||| | ||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 171 AAGATCAACGATCTATGTGGTATCAAGGAGTCTGATACTGGTTTAGCTCCTCCCAGTCAA 230
Query 825 TGGGATCTTGTATCTGATAAGCAAATGATGCAAGAGGAGCAACCTCTGCTTGTTGCGACA 884
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 231 TGGGATCTTGTATCTGATAAGCAAATGATGCAAGAGGAGCAACCTCTGCAGGTTGCGAGA 290
Query 885 TGCACACAGATAATCAGTCCAAACACTGAAGATGCAAAGTATGTCGTTGATATCAAA-AA 943
|||||| ||||||| ||||||||||| ||||||||||| || ||| || || ||||| ||
Sbjct 291 TGCACAAAGATAATAAGTCCAAACACCGAAGATGCAAAATACGTCATTAATGTCAAACAA 350
Query 944 GATAGGC-AAGTATGTTGTTGGACTTGGCGATAAAGCTTCTCCCACTGACATAGAAGCAG 1002
|| | | |||| ||||||||||||||||||||||| |||||||||||| || |||| ||
Sbjct 351 -ATTG-CTAAGTTTGTTGTTGGACTTGGCGATAAAGTTTCTCCCACTGATATTGAAGAAG 408
Query 1003 GAATGCGTGTGGGAGTTGATCAGAAGAAATATCAGATACAGATTCCTCTACCTCC-AAAG 1061
| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| |||
Sbjct 409 GCATGCGTGTGGGAGTTGATCGGAATAAATATCAGATTCAGATTCCTCTACCTCCGAAA- 467
Query 1062 ATTGATCCTAGTGTGACCATGATGACGGTTGAAGAGAAACCTGATGCAACTTACAGTGAT 1121
|| |||||||| |||||||||||||| || |||||||||||||||| |||||||| ||||
Sbjct 468 ATCGATCCTAGCGTGACCATGATGACAGTCGAAGAGAAACCTGATGTAACTTACAATGAT 527
Query 1122 ATCGGTGGCTGCAAGGAGCAGATTGAGAAGATTAGAGAGGTCGTTGAACTGCCAATGCTT 1181
| |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 528 GTTGGTGGCTGTAAGGAGCAGATTGAGAAGATGCGAGAGGTTGTTGAACTGCCAATGCTT 587
Query 1182 CATCCAGAGAAATTTGTGAGGCTTGGAATAGATCCTCCCAAGGGTGTTCTTTGCTATGGT 1241
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 588 CATCCAGAGAAATTTGTGAAGCTTGGAATAGATCCTCCCAAGGGTGTTCTCTGCTATGGT 647
Query 1242 CCTCCTGGTAGC-GGAAAAACCCTTGTCGCTAGAGCTGTGGCGAATAGAACTGGTGCTTG 1300
|||||||||| | || ||||||||| | |||||||||||||| || ||||| | ||||||
Sbjct 648 CCTCCTGGTA-CTGGTAAAACCCTTCTGGCTAGAGCTGTGGCCAACAGAACCGATGCTTG 706
Query 1301 CTTTATCAGGGTTGTTGGCAGTGAGCTCGTTCAGAAGTACATTGGTGAAGGAGCTAGGAT 1360
||||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 707 CTTTATCAGGGTTATCGGCAGTGAGCTTGTTCAGAAGTATGTTGGTGAAGGAGCTAGGAT 766
Query 1361 GGTTCGTGAACTGTTTCAGATGGCACGGTCAAAGAAAGCTTGCATTTTGTTCTTTGACGA 1420
|||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| ||
Sbjct 767 GGTTCGTGAACTGTTTCAGATGGCACGGTCCAAGAAAGCTTGCATTGTATTCTTTGATGA 826
Query 1421 AATTGATGCCATTGGCGGTGCAAGATTTGATGACGGTGTAGGCAGTGATAATGAAGTCCA 1480
| ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 827 AGTTGATGCCATTGGTGGTGCAAGATTTGATGACGGTGTTGGTGGTGATAATGAAGTCCA 886
Query 1481 ACGTACCATGCTTGAGATTTTGTATCAGCTTGATGGGTTTGACGCACGTGGTAACATCAA 1540
|||||| |||||||||||| || |||||||||||||||| ||||||||||||||||||||
Sbjct 887 ACGTACTATGCTTGAGATTGTGAATCAGCTTGATGGGTTCGACGCACGTGGTAACATCAA 946
Query 1541 GGTTCTTATGGCAACAAACAGGCCTGACATACTAGACCCAGCTCTTTTACGTCCTGGACG 1600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 947 GGTTCTTATGGCAACAAACAGGCCTGACACACTAGACCCAGCTCTTTTACGTCCTGGACG 1006
Query 1601 TCTTGACCGCAAGGTTGAGTTTTGTCTGCCTGATCTGGAGGGCAGAACACAGATCTTCAA 1660
||||||||| |||||||||||| |||| ||||| |||||| |||||||||||||||||||
Sbjct 1007 TCTTGACCGTAAGGTTGAGTTTGGTCTTCCTGACCTGGAGAGCAGAACACAGATCTTCAA 1066
Query 1661 GATTCACACACGAACAATGAGTTGTGAAAGAGACATCCGGTTT-GAACTCCTTGCTGGCC 1719
||||||||||||||| |||| || |||||||||||||| ||| |||||||||||| |||
Sbjct 1067 GATTCACACACGAACCATGAACTGCGAAAGAGACATCCG-TTTCGAACTCCTTGCTCGCC 1125
Query 1720 TCTGCCCAAACTCAACCGGAGCTGATATCAGAAGTGTATGCA-TAGAAGCCGGAATGTAT 1778
|||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 1126 TCTGCCCAAACTCAACCGGAGCTGATATCAGAAGTGTATGCACT-GAAGCAGGAATGTAC 1184
Query 1779 GCAATCGGAGCTAGGAGAAAGTCTGTGACTGAGAAGGACTTTCTGGACGCAGTGAACAAA 1838
|||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1185 GCAATCAGAGCTAGGAGAAAGACTGTGACTGAGAAAGACTTTCTGGACGCAGTGAACAAA 1244
Query 1839 GTTGTTAAAGGTTATCAAAAGTTCAGTGCAACACCCAAGTATATGGCCTACTACATTTAG 1898
|| |||||||||| |||||||||||||| || |||||||| |||| |||| | ||| ||
Sbjct 1245 GTCATTAAAGGTTACCAAAAGTTCAGTGCCACTCCCAAGTACATGGTCTAC-A-ATT-AG 1301
Query 1899 AAAG-G-TAGAGAGAAGTC 1915
| || | |||| |||||||
Sbjct 1302 AGAGAGATAGA-AGAAGTC 1319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79532431560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5