BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53790.2
Length=1852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336831 jgi|Araly1|336831|fgenesh1_pg.C_scaffold_1003396 1266 0.0
Ahg922868 jgi|Araly1|922868|scaffold_104149.1 433 3e-120
Ahg923937 jgi|Araly1|923937|scaffold_105218.1 263 4e-69
Ahg923885 jgi|Araly1|923885|scaffold_105166.1 67.6 3e-10
> Ahg336831 jgi|Araly1|336831|fgenesh1_pg.C_scaffold_1003396
Length=1467
Score = 1266 bits (685), Expect = 0.0
Identities = 978/1114 (88%), Gaps = 41/1114 (4%)
Strand=Plus/Plus
Query 305 ATCCCGATCGATCTCCTCATGGATATCTTTTCGAGAGTTCCTGCAAAGTCTATAGCTAGG 364
||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 37 ATCCCAATCGATGTCCTCATGGATATATTTTCGAGAGTTCCTGCAAAGTCTATAGCTATG 96
Query 365 TTTCGTTGCGTATCCAAACTCTGGGAATCCATACTTTGTCGTCCTGATTTCA-AGGAGTT 423
|||||||||||||| ||| ||||||| || |||||||| | ||||||||||| | |||||
Sbjct 97 TTTCGTTGCGTATCGAAATTCTGGGATTCAATACTTTGCCATCCTGATTTCACA-GAGTT 155
Query 424 GT-TCATGACTATGTCTTCGATTCGTCCACCGT-TGCTTC-TTTTCACCTTCCAAGATGA 480
|| | |||| || |||||||||||||| ||| | ||| || |||||||||| ||||| |
Sbjct 156 GTAT-ATGAATACGTCTTCGATTCGTCAACC-TCTGC-TCTTTTTCACCTTGGAAGAT-A 211
Query 481 TGATGGCAATTTGTTCTTCTTCTCTTCACCTCACCCTCAGATTCCATGTA-ACGAGAATA 539
||||||| ||||||||||||||||||||||||||||||| ||| | | | ||||| |
Sbjct 212 --ATGGCAAGTTGTTCTTCTTCTCTTCACCTCACCCTCAGAATCC-TCCAGATGAGAACA 268
Query 540 CGTCTCTTGTACCCACCCGTTATCATGTT---C--AA-CA-T-ACC-ACAGATTCTTT-T 589
| ||||||||||||||||||||||||||| | || || | || ||||||| |||
Sbjct 269 CATCTCTTGTACCCACCCGTTATCATGTTCACCATAACCATTCTCCTACAGATT-TTTCA 327
Query 590 TCTGAAATTGGTTCTCCTCTTTGTGGATTCATCTGTCGCCGAGGTAAGAGAAATCTAGAT 649
|||||| || ||| ||||||| |||||||| ||||| | |||| |||| ||| |||||||
Sbjct 328 TCTGAAGTTAGTTTTCCTCTTCGTGGATTCGTCTGTAGTCGAGATAAGGGAAGTCTAGAT 387
Query 650 ACTATGGTAATTTGTAACCCAGTCACGGGAGAGTCCGTATCCTTACCCAAAGTGGAACTG 709
|||||||| ||||| ||||| ||||| ||||||| ||||||||||| || ||||| ||
Sbjct 388 ACTATGGTTATTTGCAACCCTGTCACAGGAGAGTTTGTATCCTTACCTAAGGTGGAGTTG 447
Query 710 AAGAGTATTAATACTGAGACAAGACCTTATTTAGGATATGATCCGGTCCG-CAAACAGCT 768
|||||| |||||||||||||||||||||||||||| ||||||||| | || ||||||| |
Sbjct 448 AAGAGTGTTAATACTGAGACAAGACCTTATTTAGGGTATGATCCGAT-CGACAAACAGTT 506
Query 769 AAAGGTATTGTGCATCAAG-TCTGATGATATCCCAAATACGTGTGATGAGCATCAAGTTT 827
||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 507 AAAAGTATTGTGCATCAAGTTC-GATGATATCCCAAATACGTGTGATGAGCATCAAGTTT 565
Query 828 TGACATTGGAGAATGGAAACCATTTATGGAGAACAATCCAATGCAAACCCCATTATCCTA 887
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 566 TGACATTGGAGAATGGAAAACATTTATGGAGAACAATCCAATGCAAACCCCATTATCCTA 625
Query 888 AATCTGATGGAATATGCATAGATGGTATTTTGTATTATACAGCTGGGTTCGATATGCGGG 947
||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 626 AATCTGATGGAATTTGCATAGATGGTACTTTGTATTATACAGCAGGGTTCGATATGCGGA 685
Query 948 CAAGGGTTTCTATGGTAGTGTGCTTTGATGTGAGGTCTGAAAAGTTTAGCTTTATCAACA 1007
||| ||||||||| |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 686 TAAGCGTTTCTATGATAGTGTGCTTTGATGTTAGGTCTGAGAAGTTTAGCTTTATCAACA 745
Query 1008 TACATGTATTCATGTTGATGAATGACT-CTTGTACTCTAATCAACTACAAGGGTAAACTA 1066
|| ||| || ||||||||||| || || |||||||| | |||||||||||||||||||||
Sbjct 746 TAGATGAATGCATGTTGATGACTG-CTTCTTGTACTTTGATCAACTACAAGGGTAAACTA 804
Query 1067 GGTGCACTTCAGTTTACATGTTTGTCTCCAAAACGTCTT-AGGTTCTGGGTTCTAGTAA- 1124
||||||||||||||| ||| |||| |||||||||||||| || |||||||||||| ||
Sbjct 805 GGTGCACTTCAGTTTTCATTTTTGCCTCCAAAACGTCTTGAG-TTCTGGGTTCTAC-AAG 862
Query 1125 ATGCTGAGAAAA-ATATATGGACCAAATG-TATCTATGCATTGCCTCCTTTGTGGAACAA 1182
||||| | |||| |||||||| ||||| | |||||| ||||||||||||| ||||||||
Sbjct 863 ATGCTCA-AAAATATATATGGTCCAAA-GATATCTACACATTGCCTCCTTTTTGGAACAA 920
Query 1183 C-T--TAGTTCAGCATACGGAGTTAGCCATTGTTGGAATGACTGATGGAGGTGAAGTTGT 1239
| | ||||| ||| ||| ||||||| |||||||||||||||| |||||||||||||||
Sbjct 921 CGTAGTAGTTAAGCGTACCGAGTTAGTCATTGTTGGAATGACTCCTGGAGGTGAAGTTGT 980
Query 1240 GTTGTCACAGTACTGTCTAATATACGCATTTTACATTTATTACTTCAACCTTGAGAGCAA 1299
|||| ||| ||||||||| || ||||||||||| |||||||||||||||| ||||||||
Sbjct 981 GTTGACACCGTACTGTCTGGTAGACGCATTTTACGTTTATTACTTCAACCTAGAGAGCAA 1040
Query 1300 GAGTCTCACAAGAGTTCAAATACAAGATGTTGAAATGTTCAAACGTACGAGAGTTTACAC 1359
||||||||||||||||||| |||||| | || ||||||| || |||||||||||||||||
Sbjct 1041 GAGTCTCACAAGAGTTCAAGTACAAGGTCTTAAAATGTTTAAGCGTACGAGAGTTTACAC 1100
Query 1360 CTCTCTAGGCTATGTTGAGAATTTTAAACTTATG 1393
|||||||| ||||||||||||||| |||||||||
Sbjct 1101 CTCTCTAGACTATGTTGAGAATTTGAAACTTATG 1134
> Ahg922868 jgi|Araly1|922868|scaffold_104149.1
Length=733
Score = 433 bits (234), Expect = 3e-120
Identities = 357/416 (86%), Gaps = 10/416 (2%)
Strand=Plus/Plus
Query 983 TCTGAAAAGTTTAGCTTTATCAACATACATGTATTCATGTTGATGAATGACTCTTGTACT 1042
||||| |||||||| ||||| ||||| ||| || ||||||||||| | | |||||||||
Sbjct 300 TCTGAGAAGTTTAGTTTTATTGACATAGATGGATGCATGTTGATGACTCATTCTTGTACT 359
Query 1043 CTAATCAACTACAAGGGTAAACTAGGTGCACTTCAGTTTACATGTTTGTCTCCAAA-ACG 1101
| |||||||||||||||||| ||||||||||||||||||||| ||||| | |||| ||
Sbjct 360 TTGATCAACTACAAGGGTAAATTAGGTGCACTTCAGTTTACATTTTTGTGT-CAAAGACA 418
Query 1102 TCTTAG-GTTCTGGGTTCTAGTAA-ATGCTGAGAAAAATATATGGACCAAATG-TATCTA 1158
||| | ||| ||| |||||| || ||||||||||| |||||||| ||||| | ||||||
Sbjct 419 ACTT-GAGTTTTGGATTCTAG-AAGATGCTGAGAAATATATATGGTCCAAA-GATATCTA 475
Query 1159 TGCATTGCCTCCTTTGTGGAACAACTTAGTTCAGCATACGGAGTTAGCCATTGTTGGAAT 1218
||||||| |||||||| ||||| ||||||| | | | |||||| ||||||||||||
Sbjct 476 CATATTGCCTTCTTTGTGGGACAACATAGTTCAACGTGCCGAGTTATTCATTGTTGGAAT 535
Query 1219 GACTGATGGAGGTGAAGTTGTGTTGTCACAGTACTGTCTAATATA-CGCATTTTACATTT 1277
||||| | |||||||||||||||||||||||||||||||| || | | ||| ||||||||
Sbjct 536 GACTGGTAGAGGTGAAGTTGTGTTGTCACAGTACTGTCTAGTAGAAC-CATGTTACATTT 594
Query 1278 ATTACTTCAACCTTGAGAGCAAGAGTCTCACAAGAGTTCAAATACAAGATGTTGAAATGT 1337
|||||||||||||||||||| |||| ||||||||||||||||||||| | ||||| |||
Sbjct 595 ATTACTTCAACCTTGAGAGCTGGAGTTTCACAAGAGTTCAAATACAAGGTCTTGAAGTGT 654
Query 1338 TCAAACGTACGAGAGTTTACACCTCTCTAGGCTATGTTGAGAATTTTAAACTTATG 1393
| || ||||||||||||||||||||||||| ||||| ||||||||| |||||||||
Sbjct 655 TTAAGCGTACGAGAGTTTACACCTCTCTAGACTATGCTGAGAATTTGAAACTTATG 710
Score = 342 bits (185), Expect = 5e-93
Identities = 264/302 (87%), Gaps = 6/302 (2%)
Strand=Plus/Plus
Query 634 TAAGAGAAATCTAGATACTATGGTAATTTGTAACCCAGTCACGGGAGAGTCCGTATCCTT 693
|||| ||| ||||||||||||||| |||| |||||| ||||| ||||||||| || ||||
Sbjct 5 TAAGGGAAGTCTAGATACTATGGTTATTTATAACCCGGTCACAGGAGAGTCCTTACCCTT 64
Query 694 ACCCAAAGTGGAACTGAAGAGTATTAATACTGAGACAAGACCTTATTTAGGATATGATCC 753
||||||||||||| |||||||| ||||||||| |||||||||||||||||| ||||||||
Sbjct 65 ACCCAAAGTGGAATTGAAGAGTGTTAATACTGTGACAAGACCTTATTTAGGGTATGATCC 124
Query 754 GGTCCG-CAAACAGCTAAAGGTATTGTGCATCAAG-TCTGAT-GATATCCCAAATACGTG 810
| | | ||||||| |||| ||||||||||||||| || | | || ||||| ||| |
Sbjct 125 GAT-TGACAAACAGTTAAAAGTATTGTGCATCAAGTTC-GGTGGA-ATCCCGGATATTTT 181
Query 811 TGATGAGCATCAAGTTTTGACATTGGAGAATGGAAACCATTTATGGAGAACAATCCAATG 870
|| ||| |||||||| ||||||||| | |||||||| |||||||||||||||||||||||
Sbjct 182 TGTTGATCATCAAGTGTTGACATTGAATAATGGAAAACATTTATGGAGAACAATCCAATG 241
Query 871 CAAACCCCATTATCCTAAATCTGATGGAATATGCATAGATGGTATTTTGTATTATACAGC 930
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 242 CAAACCCCATTATCCTAAATCCAATGGAATATGCATAGATGGTGTTTTGTATTATACATC 301
Query 931 TG 932
||
Sbjct 302 TG 303
> Ahg923937 jgi|Araly1|923937|scaffold_105218.1
Length=1321
Score = 263 bits (142), Expect = 4e-69
Identities = 154/160 (96%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 85 TCCGCTTGACGAAGATGATATCGCTCTCGTCAAGACTTATGGGTTAGTGCCTTACTCTGC 144
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 68 TCCGCTTGACGAAGATGATATCGCTCTCCTCAAGACTTATGGGTTAGGGCCTTACTCTGC 127
Query 145 ACCTATCAAGAAAGTGGAGAAAGAAATTAAGGAACTCACCGAGAAGATCAACGATCTATG 204
||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 128 ACCTATCAAGAAAGTGGAGAAAGAAATTAAGGATCTCGCCAAGAAGATCAACGATCTATG 187
Query 205 TGGTATCAAGGAGTCTGATACTGGTTTAGCTCCTCTCAGT 244
||||||||||||||||||||||||||||||||||| ||||
Sbjct 188 TGGTATCAAGGAGTCTGATACTGGTTTAGCTCCTCCCAGT 227
> Ahg923885 jgi|Araly1|923885|scaffold_105166.1
Length=1024
Score = 67.6 bits (36), Expect = 3e-10
Identities = 175/237 (74%), Gaps = 29/237 (12%)
Strand=Plus/Plus
Query 338 AGAGTTCCTGCAAAGTCTATAGCTAGGTTTCGTTGCGTATCCAAACTCTGGGAATCCATA 397
||||| || | |||||||||||||||||||||||||||||| || ||||||||
Sbjct 30 AGAGTCCCGGGAAAGTCTATAGCTAGGTTTCGTTGCGTATC--------GG-AATCCATA 80
Query 398 CTTTGTCGTCCTGATTTCAAGGAGTTGTTCATGACTATGTCT-TCGAT-TCGTCCACCGT 455
||| ||| || |||| ||| |||| |||| | |||| |||| | | | || ||||| |
Sbjct 81 CTTGGTCATCTTGATGTCACGGAGCAGTTCCTAACTAAGTCTGT-G-TCTCATCCACGGC 138
Query 456 TGCTTCTTTTCACCTTCCAAGATGA-TGATGGCAATTTGTTC-TTCTTCTCTTCACCTCA 513
| ||| ||||| | || || || | ||| || || || || ||||||||||||||
Sbjct 139 T-CTTGTTTTC-C-TTGGAATAT-ACTGAA---AAGTTCTTGGTT-TTCTCTTCACCTCA 190
Query 514 CCCTCAGATTCCATGTAACGAGAA-TACGTCTCTTGTACCCACCCGTTATCA-TGTT 568
||||| | ||| | | ||||| | | ||||||||| |||||| |||| | ||||
Sbjct 191 ACCTCAAAAACCA-G-AT-GAGAACT-CTTCTCTTGTAGCCACCCCTTATAAGTGTT 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69552787370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5