BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53800.2
Length=2018
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474512 jgi|Araly1|474512|fgenesh2_kg.1__4466__AT1G53800.2 3018 0.0
> Ahg474512 jgi|Araly1|474512|fgenesh2_kg.1__4466__AT1G53800.2
Length=1999
Score = 3018 bits (1634), Expect = 0.0
Identities = 1903/2027 (94%), Gaps = 41/2027 (2%)
Strand=Plus/Plus
Query 5 TTGTGTGGCTTATCCTTGTCTGTC--AAATTCCTGCAAAAACTCTCGCCTCTCTCA-GAC 61
|||||||||||||||||||||||| |||||||||||||||| || ||||||| | |||
Sbjct 1 TTGTGTGGCTTATCCTTGTCTGTCTTAAATTCCTGCAAAAACCCTAACCTCTCT-ATGAC 59
Query 62 AAGAAGAGTG--TT-TCAAAGTTTCTTC-C----TTTTTCGTTTTCCTGGTCTGAATGAG 113
||| |||||| || || |||||||||| | |||||||||||||||| |||||||||
Sbjct 60 AAGTAGAGTGTTTTGTCCAAGTTTCTTCTCTTTTTTTTTCGTTTTCCTGGGCTGAATGAG 119
Query 114 CTCCCAATGCCTTCTTTAGGTACCTTTTCTGATATTGCTACTATCCAACCTTCATTTCAA 173
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 120 CTCCCAATGCCTTCTTTAGGTACCTTTTCTGATATTGCTACTATCCAACCTTCCTTGCAA 179
Query 174 GCTCATCTTGTTCCATTGGGGGCTCAGAGTATTATCCATGCTAAAAGTCTACCTAATCCA 233
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 GCTCATCTTGTTCCATTGGGGGCTCAGAGTATTATCCATGCTAAAACTCTACCTAATCCA 239
Query 234 TGGAGACAGTCTTGTTTCTCCAAGAATTTGAAATTTTACACGGGTCATAG-TCATGTCCG 292
|||||||| || |||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 240 TGGAGACAATCCTGTTTCTCCAAGAATTTGAAATTTTACACGGGCCAT-GCTCATGTCCG 298
Query 293 AAGAGGAAAAGTTCTTATTACTGCAGTGGCCACTCTTGAAACCAAGTATCCGGCTCAAAA 352
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 299 AAGAGGCAAAGTCCTTATTACTGCAGTGGCCACTCTTGAAACGAAGTATCCGGCTCAAAA 358
Query 353 AGAAAACGAACGGAGCTCTTCTTTGTCTTCTGCTTCTTCGAAATCCTCAAATGGAAGTGC 412
||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 359 AGAAAACGAACAGAGCTCTTCTTTGTCTTCTGCTTCTTCAAAATCCTCAGATGGAAGTGC 418
Query 413 TGATGATGGCGAAGAACAAGTGGATGACAGAGAAAAGTTGAGAAGGATGAGGATTTCTAA 472
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGATGATGGC---G---AAGTGGATGACAGAGAAAAGTTGAGAAGGATGAGGATTTCTAA 472
Query 473 GGCAAATAGAGGGAACACTCCTTGGAACAAAGGCAGGAAGCATAGTCCAGAGACCCTACA 532
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 473 GGCAAATAGAGGGAACACTCCTTGGAACAAAGGCAGGAAGCATAGTCCGGAGACCCTACA 532
Query 533 GAAGATTAGAGAAAGGACAAAGATTGCAATGCAAGACCCAAAGATCAAGATGAAATTAGC 592
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 533 GAAGATTAGAGAAAGGACAAAGATTGCAATGCAAGACCCAAAGATCAAGCTGAAATTAGC 592
Query 593 GAATCTTGGGCACGCACAAAACAAGGAGACACGGATGAAGATTGGAGAGGGAGTGCGGAT 652
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 593 GAATCTTGGACACGCACAAAACAAGGAGACACGGATGAAGATTGGGGAGGGAGTGCGGAT 652
Query 653 GCGATGGGCAAGGAGGAAGGAGAGGAGAAAAGTGCAGGAGACATGTCATTTCGAGTGGCA 712
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 653 GCGATGGGCAAGGCGGAAGGAAAGGAGAAAAGTGCAGGAGACATGTCATTTCGAGTGGCA 712
Query 713 AAACTTGTTAGCGGAGGCTGCTAAACAAGGATATACAGACGAAGAAGAGCTTCAGTGGGA 772
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 713 AAACTTGTTAGCGGAGGCTGCTAAAGAAGGATATAGAGACGAAGAAGAGCTTCAGTGGGA 772
Query 773 TTCTTACAACATCTTGGATCAACAGAATCAACTGGAATGGCTGGAAAGTGTTGAGCAGAG 832
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TTCTTACAAAATCTTGGATCAACAGAATCAACTGGAATGGCTGGAAAGTGTTGAGCAGAG 832
Query 833 GAAAGCCATTAAAGGAGCTAAAAGTAACAGAAGAGCGCCAAAATCTCCTGAACAAAGAAG 892
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GAAAGCCGCTAAAGGAGCTAAAAGTAACAGAAGAGCGCCAAAATCTCCTGAACAAAGAAG 892
Query 893 GAGAATTGCAGAAGCAATAGCTGCTAAATGGGCTGATCCATCTTACCGTGAAAGAGTTTG 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GAGAATTGCAGAAGCAATAGCTGCTAAATGGGCTGATCCATCTTACCGTGAAAGAGTTTG 952
Query 953 CTCCGGCTTGGCAAAATATCACGGTATACCTGTTGGTGTCGAGAGGCGTCGTAGAAGACC 1012
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 CTCTGGCTTGGCAAAATATCACGGTATACCTGTTGGTGTCGAGAGGCGTCGTAGAAGACC 1012
Query 1013 AAGGAGCGATGCAGAACCTAGAAAGAAGACTCCTACAAAGAAAAGTACAAGGGATTCAGA 1072
||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1013 AAGGACCGATGCTGAACCTAGAAAGAAGAATCCTACAAAGAAAAGTACAAGGGATTCAGA 1072
Query 1073 GTTTGAACGTCAAAGCCAAGTTCAAGTGGTGAAAGTAAGGAAGCGCAAAACACCTGCGTA 1132
||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| |||
Sbjct 1073 GTTTGAACGGCAAAGCCAAGTTCAAGTAGTGAAAGTACGGAAGCGCAAAACACCTGTGTA 1132
Query 1133 TAAAGATCCTTTGGCAAGTTCAAAACTGGAAATGATCAAAAGCATCAGAGCAAAACGAGT 1192
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1133 TAAAGACCCTTTGGCAAGTTCTAAACTGGAAATGATAAAAAGCATCAGAGCAAAACGAGT 1192
Query 1193 GGCGGAAGAATCAAAGAAGATGGATGCTGTGGAACGAGCAAGGCTTTTGATCTCGGAAGC 1252
||| |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1193 GGCTGAAGAATCGAAGAAGATGGATGCTGTAGAACGAGCAAGGCTTCTGATCTCGGAAGC 1252
Query 1253 TGAGAAAGCTGCGAAAGTCCTCGAGATTGCTGCTTTGAAAAGCCCGGTTGCTCAAGCATC 1312
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TGAGAAAGCTGCGAAAGTCCTTGAGATTGCTGCTTTGAAAAGCCCGGTTGCTCAAGCATC 1312
Query 1313 GTTGTTAGAGAGTAAAAAGCTCATAGCAGAAGCAACACAACTGATTAAATCTTTAGAGAT 1372
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1313 TTTGTTAGAGAGTAAAAAGCTCATAGCAGAAGCAACACAACTGATTGAATCTCTAGAGAT 1372
Query 1373 GAGGCAGATAGCTTCAGATGAAGATGGGACTTACCCAT-TTCTTCTTTCACCTCAGCCTA 1431
|||||||||||||||||||||||||||||||||||||| || |||| |||||||||| ||
Sbjct 1373 GAGGCAGATAGCTTCAGATGAAGATGGGACTTACCCATCTT-TTCTCTCACCTCAGCATA 1431
Query 1432 ATGACAGTGAATCTGAAACCAAAGATACAAACGATCAAGAACGACCAGGAGAGATTAATG 1491
|| |||||||||| |||||||||||||||||||||||||||| || |||||||||||| |
Sbjct 1432 ATAACAGTGAATCCGAAACCAAAGATACAAACGATCAAGAACAACAAGGAGAGATTAACG 1491
Query 1492 GAACACACACATTGCAGATCAACGGAGAGAGTCTTCACATGAACATGAGATCTAACGATT 1551
||||||||||||| | |||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1492 GAACACACACATTCCCGATCAACGGAGAGAGTCTTCACTTGAACATGAGATCTAGCGATT 1551
Query 1552 TACCGACTTTCGTTATAGAAGGTACTACAAACCAGTTTGTTTCTGATATGGAATCCAACA 1611
||||||| ||| ||||||||||||||||| |||| | ||||||||| |||||||||||
Sbjct 1552 TACCGACATTCAACATAGAAGGTACTACAAATCAGTCTATTTCTGATAAGGAATCCAACA 1611
Query 1612 CATCCCAAGGAGGTAGAGAAGATATCAAACTCGGGATAGTTGGGCAACCAAACGGAACGA 1671
||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1612 CATCCCAGGGAGATAGAGAAGATATCAAACTCGGGATAGTTTCGCAACCAAACGGAACCA 1671
Query 1672 GAGTCCATCCACCAGCAGAGTCTAATGGAGCTATCAGTCTTGCTGAGAATCATCCTCTTC 1731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 GAGTCCATCCACCAGCAGAGTCTAATGGAGCTATCAGTCTTGCTGAGAATCATCCTCTTC 1731
Query 1732 CAAATGGTTACCACGGGATTGACGAAAAGGCTGCATCTTTGGAATCAGGAAACGTAACGA 1791
| ||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct 1732 CGAATGGTTACCACGGGATGGACGACAAGGCTATATCTTTGGAATCAGGAAACGTAACGA 1791
Query 1792 AGAAGTGGGTTCGTGGAAGGCTCGTCGAAGTCACAGAAGCAGCCTAATGTCGTAGCAATT 1851
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 1792 AGAAGTGGGTTCGTGGAAGACTCGTCGAAGTCACAGAAGCAGCCTAATGTTGTAGCGATT 1851
Query 1852 TAGCAGAGAAAAGTCATATTTTTCAATTAGTAATTCAAAATTTTGGCTTATATATTGGTC 1911
||||||||||||||| |||||| || ||||| ||||||||||||||||||||| | |
Sbjct 1852 TAGCAGAGAAAAGTCGTATTTT-CAGTTAGTGATTCAAAATTTTGGCTTATAT---G--C 1905
Query 1912 TTATCTCTTATGCTTGAGAGAAGCAGTTTCCAGTTTGTGATGTGCCAATTGTATCTATAA 1971
|| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1906 TT---------G----AGAGAAGCAGTTTCCAGTTTGTGATGTGCCAATTGTATCTATAA 1952
Query 1972 CTCAATTGTATGTCAGAGTTTCAGCTTAGTAAACAATTCTTCATAGC 2018
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953 CTCAATTGTATGTCAGAGTTTCAGCTTAGTAAACAATTCTTCATAGC 1999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75875768040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5