BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53815.1 Length=714 Score E Sequences producing significant alignments: (Bits) Value Ahg337517 jgi|Araly1|337517|fgenesh1_pg.C_scaffold_1004082 320 8e-87 Ahg315251 jgi|Araly1|315251|fgenesh1_pm.C_scaffold_2000284 265 4e-70 Ahg337498 jgi|Araly1|337498|fgenesh1_pg.C_scaffold_1004063 80.5 2e-14 > Ahg337517 jgi|Araly1|337517|fgenesh1_pg.C_scaffold_1004082 Length=918 Score = 320 bits (173), Expect = 8e-87 Identities = 483/624 (77%), Gaps = 56/624 (9%) Strand=Plus/Plus Query 50 GATCCAATAAACCG-TCTTCAACACCTGGA-A--AAGACATAGAATACTTTGGTCTGA-T 104 ||||||||||| || ||||||||| ||||| | || |||| | ||||||| || || | Sbjct 50 GATCCAATAAA-CGATCTTCAACATCTGGAGAGGAA-ACAT-G-TTACTTTGATCCGATT 105 Query 105 CCCTGTTGATCTCTTCATCAGTAATATCTTATCGAGATTGCCGCTGAAGTCTAAAGCTAA 164 ||| ||||||||| ||||| |||||||| ||||||||||| ||| ||| || || | Sbjct 106 CCC-GTTGATCTCATCATC---AATATCTTGTCGAGATTGCCTCTGGAGTGTATTGCGAG 161 Query 165 GTGTCGCTGCGTATCGAAGCTCTGGTCGTCCATAATTCGCCGTCCAAATTACAACCAGTT 224 |||||| || ||||| || || |||||||||||| ||||||||||||||||||||| ||| Sbjct 162 GTGTCGTTGTGTATCCAAACTGTGGTCGTCCATAGTTCGCCGTCCAAATTACAACCTGTT 221 Query 225 GTTCCCGATCAAGTCCCCAGCT---CCGCGGATCCTTTTCACCATCGAA-TATGCAGGAA 280 ||||||| ||||||| || ||| |||||| |||||||| | || || | | || ||| Sbjct 222 GTTCCCGTTCAAGTCTCCGGCTACACCGCGGCTCCTTTTCGCGTTCAAAGT-TTCA-GAA 279 Query 281 -TCTTGTTCTTTTACTCTTCACCTCAGCCTCACAATCCGGATG-A-GAACTCGTCTCTTG 337 ||||| || ||||||||||||||||||||||||| | || | ||||| |||||||| Sbjct 280 GAGTTGTTATTCAACTCTTCACCTCAGCCTCACAATCC-G-TGTAGGAACTTGTCTCTTG 337 Query 338 TAGCCACCCT-TCATCAGAACACTGGTAACACCAAGTTCTATGAGATATGTGGTCCTGTC 396 |||||| ||| || ||||| ||| || | | || |||| | || | ||| | |||||| Sbjct 338 TAGCCA-CCTCTCTTCAGAGGACTTCTAGCGCAAATTTCTTTAAGTTTTGTCGCCCTGTC 396 Query 397 TGCGGACGGGTACTGT-G---TC--GTC-AGTAT-A--ATTCAGTTGG-GGTGATTTATA 445 |||| ||| |||| | | || | || | |||||| ||| ||| ||||||| Sbjct 397 CACGGATTGGT-CTGTCGCCAACATATCGAAAATAACTATTCAG-TGGCGGTAATTTATA 454 Query 446 ATCCCATCACAGGAGAGTC-TTCAAAC-TTGCCGAAACTAAGTTTAAAGGGGATTAA-TA 502 ||||||||||||||||||| ||| || || || ||||| || | ||||||| || | Sbjct 455 ATCCCATCACAGGAGAGTCTTTC--ACTTTACCCAAACTGAGAATGGAGGGGATGAATTC 512 Query 503 AGTCAGAGTG-GTTATGTGATAAAGCAAGATATTCTTTTGGGTATGATCCAATCGAGAAA 561 || |||| | | ||| || |||| |||||||||||||||||||||||| ||||| ||| Sbjct 513 AG--AGAG-GAGAAATG-GA-AAAGTAAGATATTCTTTTGGGTATGATCCGATCGAAAAA 567 Query 562 CAGCTCAAAGTGTTGTGTATCACCTGGTTGCGTA-CTGGCTCAGA-GCA-CTTGTCCAAT 618 || |||| || ||| ||||||| |||||||||| | |||||| | | | | ||| | | Sbjct 568 CAATTCAAGGTATTGCGTATCACATGGTTGCGTAGC-GGCTCACACG-AGCG-GTCTAGT 624 Query 619 GAGTATCAAGTTCTCACATTAGGG 642 |||||||||||||| || |||||| Sbjct 625 GAGTATCAAGTTCTAACGTTAGGG 648 > Ahg315251 jgi|Araly1|315251|fgenesh1_pm.C_scaffold_2000284 Length=759 Score = 265 bits (143), Expect = 4e-70 Identities = 237/281 (84%), Gaps = 11/281 (4%) Strand=Plus/Plus Query 80 AAGACATAGAATACTTTGGT-CTGATCCCTGTTGATCTCTTCATC-AGTAATATCTTATC 137 |||| | |||||| |||| | | ||||| |||||||||||||| | |||| |||||| || Sbjct 23 AAGAAACAGAATATTTTGATGC-GATCCATGTTGATCTCTTCA-CTAGTACTATCTTGTC 80 Query 138 GAGATTGCCGCTGAAGTCTAAAGCTAAGTGTCGCTGCGTATCGAAGCTCTGGTCGTCCAT 197 || ||||||| | |||||| |||| ||||||| |||||||| ||||||||||||||||| Sbjct 81 GAAATTGCCGGTAAAGTCTTTAGCTCAGTGTCGTTGCGTATCCAAGCTCTGGTCGTCCAT 140 Query 198 AATTCGCCGTCCAAATTACAACCA-GTTGTTCCCGATCAAGTCCCCAGCTCC---GCGGA 253 ||||||||||||| |||||||| | ||||||||| |||||||| || | ||| ||||| Sbjct 141 AATTCGCCGTCCATATTACAAC-ATGTTGTTCCCCATCAAGTCTCCGGATCCACCGCGGA 199 Query 254 TCCTTTTCACCATCG-AATATGCAGGAATCTTGTTCTTTTACTCTTCACCTCAGCCTCAC 312 |||||| | ||||| || |||||||| |||||||| |||||||||||||||||| Sbjct 200 TCCTTTGGAGCATCGGAA-ATGCAGGAGGGTTGTTCTTCTACTCTTCACCTCAGCCTTGT 258 Query 313 AATCCGGATGAGAACTCGTCTCTTGTAGCCACCCTTCATCA 353 || |||||||||||| |||||||||||||||| |||||||| Sbjct 259 AACCCGGATGAGAACACGTCTCTTGTAGCCACACTTCATCA 299 Score = 78.7 bits (42), Expect = 5e-14 Identities = 112/144 (78%), Gaps = 11/144 (8%) Strand=Plus/Plus Query 432 TGG-GGTGATTTATAATCCCATCACAGGAGAGTCTTCAAACTTGCCGAAACTAAGT-TTA 489 ||| ||| |||| ||||||||| || ||||||| || | |||||| ||||| | | || Sbjct 389 TGGAGGTAATTTCTAATCCCATAACGGGAGAGTTTTTAGCCTTGCCCAAACTGA-TAATA 447 Query 490 AA-GGGGATTAATAAGTCAGAGTGGTTATGTGAT-AAAGCAAGATATTCTTTTGGGTATG 547 || | || |||| || ||||||||||| || | | | || || || ||||||||||| Sbjct 448 AATGAGG-TTAAGAA---AGAGTGGTTATTTG-TCCATGAAACATTTTTTTTTGGGTATG 502 Query 548 ATCCAATCGAGAAACAGCTCAAAG 571 ||||||||||||||||| || ||| Sbjct 503 ATCCAATCGAGAAACAG-TCCAAG 525 > Ahg337498 jgi|Araly1|337498|fgenesh1_pg.C_scaffold_1004063 Length=1488 Score = 80.5 bits (43), Expect = 2e-14 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 295 TCTTCACCTCAGCCTCACAATCCGGATGAGAACTCGTCTCTTGTAGCCACCC 346 ||||||||||| ||||| ||||| |||||||||||||||||||||||||||| Sbjct 274 TCTTCACCTCAACCTCAAAATCCAGATGAGAACTCGTCTCTTGTAGCCACCC 325 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26266689813 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5