BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53820.1
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923943 jgi|Araly1|923943|scaffold_105224.1 1310 0.0
> Ahg923943 jgi|Araly1|923943|scaffold_105224.1
Length=1004
Score = 1310 bits (709), Expect = 0.0
Identities = 839/900 (93%), Gaps = 16/900 (2%)
Strand=Plus/Plus
Query 28 TCTCTTTTCAGCAAATTCGAAGGAGAAGAGACGATGGGAAAAGTTCTTCTATTCTCAATC 87
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 33 TCTATTTTCAGCAAATTCGAAGGAGAAGAGACGATGGGAAAAGTTCTTCTATTCGCAATC 92
Query 88 GTATCGATTTTCACAGGGATTCTATTCCTCCTCTTGCTTCATCTCTACGCAAGACTCTTT 147
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 93 GTATCAATTTTCACAGGGATTCTGTTCCTCCTCTTGCTTCATCTCTACGCTAGACTCTTT 152
Query 148 TGGTGGCGTGTGGAACAACATTTCAACCTAAACCTAATCCAATCCGACGATCCTGGCTCC 207
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 153 TGGTGGCGTGTGGAACAACATTTCAACCTAAACCTTATCCAATCCGACGAGCCTGGTTCC 212
Query 208 ACAGTCATCGGACGTAATCCTCGACGACGTCGTTTTGTCTTCGCTCAAAGTCAAGAAGAT 267
||||||||||||||||||| ||||| ||||||||| ||||| |||||| |||||||||||
Sbjct 213 ACAGTCATCGGACGTAATCATCGACAACGTCGTTTCGTCTTTGCTCAAGGTCAAGAAGAT 272
Query 268 CCTCTTCACAACGCTGGACTTGATTCTAAAATTCTCCAATCTATCCATGTTGTTGTTTTC 327
|||| ||||||||| || ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 273 CCTCCTCACAACGCCGGTCTTGATTCTAAAATTCTCCAATCGATCCATGTTATTGTTTTC 332
Query 328 AAGTGTACGGACTTCAAAGACGGGTTAGAATGCGCCGTTTGTCTCTCTGATCTCGTTGAT 387
|||| ||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 333 AAGTCTACGGACTTCAAAGACGGGTTAGAATGTGCCGTTTGTCTCTCCGAACTCGTTGAT 392
Query 388 GGCGACAAAGCTAGGGTTTTGCCAAGGTGTAATCATGGGTTTCATGTGGATTGTATCGAT 447
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 393 GGCGACAAAGCTAGGGTTTTGCCAAGGTGTAATCATGGGTTCCATGTTGATTGCATCGAC 452
Query 448 ATGTGGTTTCAGTCTCATTCCACTTGTCCTCTCTGTAGAAACACCGTTGGTTCCGTGGAA 507
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 ATGTGGTTTCAATCTCATTCCACTTGTCCTCTCTGTAGAAACACCGTTGGTTCCGTGGAA 512
Query 508 GATACGACACATGGAGGAAGTGAGGGTTTACCTCAAAATCAAAACTTTGAATCAGGGCAC 567
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 GAGACGATACATGGAGGAAGTGAGGGTTTACCTCAAAATCAAAACTTTGAATCAGGGCAC 572
Query 568 TCGACTAATCAGCATAATCCATCTCAAGATCAGAGCTTTGTTCAT-GAGTTTTCGACAGA 626
|||| ||||||||||||| ||||||||||||||||| ||||| | | ||||||||||||
Sbjct 573 TCGAGTAATCAGCATAATACATCTCAAGATCAGAGCCCTGTTCTTCG-GTTTTCGACAGA 631
Query 627 ACCTCTGAGTTTTCCGACAAATGTACTGGTTTGGGGAGATCAGAATCAAGTTAGAAGTGC 686
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 632 ACCTCTGAGTTTTCCGACAAATGTTCTGGTTTGGGGAGATCAGAATCAAGTTAGAAGTGC 691
Query 687 AGGCCTCGTTGTTACTGAAGAATCTCCTTCTGGAAATTTTGCAGCTTCGTATAACGATCA 746
|||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||
Sbjct 692 AGGCCTCGTTGTTACTGAAGAATCCCCTTCTGGAAATTTTGCAGATTCGTCTAACGATCA 751
Query 747 TCAACAAGAATCTAGTAGTACCAG-A----T--CA---CA-A-GAAGTGACGGCGGTTGT 794
||||||||||||||||||||||| | | || || | ||||||| |||||||||
Sbjct 752 TCAACAAGAATCTAGTAGTACCAATACCCATATCAGAGCACAAGAAGTGAGGGCGGTTGT 811
Query 795 GGTGGACATTCCGGATAATTCAAGTGAGAATTTATCCGAGAGAATCGACGAAGAAGAACC 854
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 812 GGTGGACATTCCGGCGAATTCAAGTGAGAATTTACCCGAGAGAATCGACGAAGAAGAACC 871
Query 855 TAAGTCACCGATGTTCACAAGGTTAAGATTGCTTAAGAATGTTTT-GAGTAGAGAGAAGA 913
|||||||||||||||||| |||||||||| ||||||||| ||||| ||||||||||||||
Sbjct 872 TAAGTCACCGATGTTCACGAGGTTAAGATCGCTTAAGAA-GTTTTTGAGTAGAGAGAAGA 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34615608636
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5