BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53830.1
Length=1948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923946 jgi|Araly1|923946|scaffold_105227.1 2758 0.0
Ahg478847 jgi|Araly1|478847|fgenesh2_kg.3__1548__AT3G14310.1 1136 0.0
> Ahg923946 jgi|Araly1|923946|scaffold_105227.1
Length=1801
Score = 2758 bits (1493), Expect = 0.0
Identities = 1702/1805 (94%), Gaps = 6/1805 (0%)
Strand=Plus/Plus
Query 21 CAACAACATTGTTAAGAATAATGGCACCAATCAAAGAATTCATATCCAAATTCTCAGATT 80
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1 CAACAACATTGTTAAAAATAATGGCACCAATCAAAGATTTCATATCCAAATTCTCTGATT 60
Query 81 TCAAAAACAACAAGAAACTCATTCTCTCCTCCGCCGCAATAGCCTTGCTATTATTGGCCT 140
|||| |||||||||||||||||||||||||||||||| |||||||| | ||||| |||
Sbjct 61 TCAAGAACAACAAGAAACTCATTCTCTCCTCCGCCGCGATAGCCTTATTGTTATTCGCCA 120
Query 141 CCATAGTCGGAATCGCCGCCacaacaacaaaccaaaacaaaaaccaaaaaaTCACAACTC 200
|| ||||||||||||||| | | |||||||||||||||||||| |||||||||||||||
Sbjct 121 CCGTAGTCGGAATCGCCG-C-C-ACAACAAACCAAAACAAAAATAAAAAAATCACAACTC 177
Query 201 TATCTTCGACATCACACGCCATTCTAAAATCTGTTTGCAGCTCAACACTATACCCGGAGC 260
||||||| || ||||||||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 178 TATCTTCAACGTCACACGCCGTTCTTAAATCTGTTTGCAGCTCAACACTTTACCCGGAGC 237
Query 261 TCTGTTTTTCCGCCGTGGCAGCCACCGGAGGAAAAGAGCTGACGTCACAGAAAGAAGTCA 320
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCTGTTTCTCCACCGTGGCAGCCACCGGAGGAAAAGAGCTGACGTCACAGAAAGAAGTCA 297
Query 321 TCGAAGCGTCACTTAACCTAACTACCAAAGCCGTGAAACACAACTACTTCGCTGTCAAGA 380
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 298 TCGAAGCGTCACTTAACCTAACAACCAAAGCCGTGAAACACAACTACTTCGCCGTCAAGA 357
Query 381 AGCTGATCGCGAAGAGAAAAGGTTTGACACCGCGTGAGGTCACGGCGCTTCACGACTGTT 440
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGCTGATCGCGAAGCGAAAAGGTTTGACACCGCGTGAGGTCACGGCGCTTCACGACTGTT 417
Query 441 TGGAGACAATCGACGAGACGTTAGATGAGCTCCACGTGGCGGTGGAGGATCTTCATCAGT 500
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 418 TGGAGACAATCGACGAGACGTTAGATGAGCTTCACGTGGCGGTGGAGGATATTCATCAGT 477
Query 501 ATCCTAAGCAAAAATCTCTGAGGAAACATGCCGATGATCTCAAAACACTAATCAGCTCAG 560
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 478 ATCCTAAACAAAAATCTCTGAGGAAACATGCCGATGATCTCAAAACACTAATTAGCTCAG 537
Query 561 CCATTACTAATCAAGGGACTTGCCTTGACGGTTTCTCTTACGACGACGCCGATAGGAAAG 620
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 538 CCATTACTAACCAAGGGACTTGCCTTGACGGTTTCTCTTACGACGACGCTGATAGGAAAG 597
Query 621 TTCGTAAGGCGTTATTGAAGGGTCAGGTACACGTGGAGCACATGTGTAGCAACGCATTAG 680
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 598 TTCGTAAGGTGTTATTGAAGGGCCAGGTACACGTGGAGCACATGTGTAGCAACGCATTGG 657
Query 681 CAATGATCAAGAACATGACAGAAACCGACATAGCCAACTTTGAGCTAAGAGATAAGTCTT 740
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 658 CAATGATCAAGAACATGACAGAAACCGACATAGCCAACTTCGAGCTAAGAGATAAGTCTT 717
Query 741 CAACCTTCACCAACAACAACAACCGCAAGCTCAAGGAGGTTACCGGCGACTTAGACAGTG 800
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 718 CATCCTTCACCAACAACAACAACCGCAAGCTCAAGGAGGTTACCGGTGACTTAGACAGCG 777
Query 801 ATGGATGGCCAAAGTGGTTATCCGTTGGAGACAGAAGGCTTCTTCAAGGGTCAACAATTA 860
| |||||||||| ||||||||| || ||||| ||||||||||||||||||||||| || |
Sbjct 778 AAGGATGGCCAATGTGGTTATCAGTCGGAGATAGAAGGCTTCTTCAAGGGTCAACGATCA 837
Query 861 AAGCAGACGCTACGGTGGCGGATGACGGAAGCGGTGACTTTACAACGGTAGCCGCGGCTG 920
|||||||||||||||| |||| ||||||||||||||||||||| |||||||| |||||||
Sbjct 838 AAGCAGACGCTACGGTAGCGGCTGACGGAAGCGGTGACTTTACGACGGTAGCGGCGGCTG 897
Query 921 TGGCTGCGGCGCCAGAGAAGAGTAACAAGAGGTTTGTGATACATATAAAGGCAGGAGTTT 980
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TAGCTGCGGCGCCAGAGAAGAGTAACAAGAGGTTTGTGATACATATAAAGGCAGGAGTTT 957
Query 981 ATAGAGAGAATGTGGAAGTGACGAAGAAGAAGACGAATATAATGTTCTTGGGAGATGGCC 1040
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
Sbjct 958 ATAGAGAGAATGTGGAAGTGACGAAGAAGAAGAAGAATATAATGTTTTTGGGAGATGGTC 1017
Query 1041 GTGGCAAAACTATTATCACTGGAAGTAGAAATGTCGTCGATGGAAGCACCACTTTCCACT 1100
|| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |
Sbjct 1018 AAGGAAAAACTATTATCACCGGAAGTAGAAATGTTGTCGACGGAAGCACCACTTTCCAAT 1077
Query 1101 CCGCTACTGTTGCTGCCGTCGGCGAGAGGTTTC-TAGCGCGTGACATCACATTCCAAAAC 1159
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1078 CCGCTACTGTTGCTGCCGTCGGCGAGAA-TTTCCTAGCGCGTGACATCACATTCCAAAAC 1136
Query 1160 ACCGCCGGTCCGTCGAAGCATCAAGCGGTGGCTCTCCGAGTCGGATCAGATTTTTCCGCT 1219
|| || ||||| || |||||||||||||||||||||||||| || || ||||||||||||
Sbjct 1137 ACGGCGGGTCCCTCAAAGCATCAAGCGGTGGCTCTCCGAGTTGGGTCGGATTTTTCCGCT 1196
Query 1220 TTTTACCAATGCGACATGTTTGCTTATCAAGACACACTTTATGTCCACTCAAATCGTCAA 1279
|||||||| ||||||||||||||||| ||||| |||||||| ||||| ||||||||||||
Sbjct 1197 TTTTACCAGTGCGACATGTTTGCTTACCAAGATACACTTTACGTCCATTCAAATCGTCAA 1256
Query 1280 TTCTTTGTGAAATGTCACATAACCGGAACCGTCGATTTCATCTTCGGAAACGCAGCCGCG 1339
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1257 TTCTTTGTGAAATGTCACATTACCGGAACCGTCGATTTCATTTTCGGAAACGCAGCCGCG 1316
Query 1340 GTTTTACAAGACTGCGATATAAATGCACGCAGACCAAATTCCGGTCAGAAAAACATGGTT 1399
||||||||||| |||||||| || |||||| |||||||| ||||||||||||||||||||
Sbjct 1317 GTTTTACAAGATTGCGATATTAACGCACGCCGACCAAATCCCGGTCAGAAAAACATGGTT 1376
Query 1400 ACCGCCCAAGGACGGTCTGATCCGAATCAAAACACGGGGATTGTGATCCAGAATTGTCGT 1459
|| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1377 ACAGCTCAAGGACGGTCTGATCCGAATCAAAACACGGGGATAGTGATTCAGAATTGTCGG 1436
Query 1460 ATTGGTGGCACGTCGGATCTTTTGGCCGTGAAAGGAACGTTCCCGACGTATCTTGGTCGT 1519
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1437 ATTGGTGGCACGTCGGATCTTTTGGCCGTGAAAGGAACGTTTCCGACGTATCTTGGTCGT 1496
Query 1520 CCTTGGAAGGAATATTCACGGACGGTGATAATGCAATCGGATATATCCGACGTGATCCGA 1579
|| |||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1497 CCATGGAAGGAGTACTCACGTACGGTGATAATGCAGTCGGATATATCCGACGTGATCCGA 1556
Query 1580 CCCGAAGGATGGCATGAGTGGAGCGGGAGTTTTGCGTTGGACACTCTAACTTATAGAGAG 1639
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1557 CCCGAAGGATGGCTTGAGTGGAGCGGGAGTTTTGCGTTGGACACTCTGACTTATAGAGAG 1616
Query 1640 TATTTGAATAGAGGAGGAGGGGCAGGAACTGCAAATAGAGTGAAGTGGAAGGGCTATAAG 1699
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1617 TATTTGAATAGAGGAGGAGGGGCAGGAACTGCAAATAGAGTGACGTGGAAGGGCTTTAAG 1676
Query 1700 GTAATTACAAGTGATACAGAAGCTCAGCCATTTACGGCTGGTCAGTTTATTGGTGGTGGA 1759
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1677 GTAATTACAAGTGATACAGAAGCTCAGCAATTTACGGCTGGTCAGTTTATTGGTGGTGGA 1736
Query 1760 GGCTGGTTAGCGTCGACCGGTTTTCCTTTCTCGTTAAGTCTTTGAAATTAAAAGA-TTGA 1818
|||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1737 GGCTGGTTGGCGTCGACCGGTTTTCCTTTCTCGTTAAGTCTTTGAAATTAAAAAAATTGA 1796
Query 1819 CTTAT 1823
||||
Sbjct 1797 GTTAT 1801
> Ahg478847 jgi|Araly1|478847|fgenesh2_kg.3__1548__AT3G14310.1
Length=2074
Score = 1136 bits (615), Expect = 0.0
Identities = 1334/1675 (80%), Gaps = 74/1675 (4%)
Strand=Plus/Plus
Query 178 caaaaaccaa--aaaaTCAC-AACTCTATCTTCGACATCACACGCCATTCTAAAAT-CTG 233
||||| |||| |||| || ||||||||| || | || |||||| | |||| || ||
Sbjct 149 CAAAATCCAACGAAAA--ACGAACTCTATCCCCGTCGTCTCACGCCGTGCTAAGATCCT- 205
Query 234 TTTGCAGCTCAACAC-TATACCCGGAGCTCTGTTTTTCCGCCGTGGCAGCCACCGGAGGA 292
|||||||| || | | ||||| ||||||||| | |||||||||||| ||||| ||
Sbjct 206 CCTGCAGCTCCACGCGT-TACCCTGAGCTCTGTATCTCCGCCGTGGCAAATACCGGCGGC 264
Query 293 AAAGAGCTGACGTCACAGAAAGAAGTCATCGAAGCGTCACTTAACCTAACTACCAA-AGC 351
||||| ||||| || ||||| |||||||| || || || ||||| || | || ||
Sbjct 265 GTCGAGCTAACGTCGCAAAAAGACGTCATCGAGGCATCGCTGAACCTTAC-AATAATCGC 323
Query 352 CGTGAAACACAACTACTTC-GCTGTCAAGAAGCTGATCGCGAAGAGAAAAGGTTTGACAC 410
|||| | ||||| |||||| | || |||||||||||| |||||||||||| | || |
Sbjct 324 CGTGGAGCACAATTACTTCAAC-GTGAAGAAGCTGATCAAGAAGAGAAAAGGACTAACGC 382
Query 411 CGCGTGAGGTCACGGCGCTTCACGACTGTTTGGAGACAATCGACGAGACGTTAGATGAGC 470
|||| || || |||||||| |||||||||||||| || ||||||||| | || ||||
Sbjct 383 CGCGCGAAAAGACAGCGCTTCATGACTGTTTGGAGACTATTGACGAGACGCTGGACGAGC 442
Query 471 TCCACGTGGCGGTGGAGGATCTTCATCAGTATCCTAAGC-AAAAATCTCTGAGGAAACAT 529
|||| | ||||||| ||||| ||| |||||| || | ||||| |||| || ||||
Sbjct 443 TCCATGAAACGGTGGAAGATCTACATTTGTATCC-AACCAAAAAAACTCTCCGGGAACAC 501
Query 530 GCC-GATGATCTCAAAACACTAATCAGCTCAGCCATTACTAATCAAGG-GACTTGCCTTG 587
||| || ||||||||||| ||||||||||| |||||||| || | ||| |||||| || |
Sbjct 502 GCCGGA-GATCTCAAAACCCTAATCAGCTCCGCCATTACCAA-CCAGGAGACTTGTCTCG 559
Query 588 ACGGTTTCTCTTACGACGACGCCGATAGGAAAGTTCGTAAGGCGTTATTGAAGGGTCAGG 647
|||| |||||| | ||||||||||||| | |||||||||| || || ||||||||||||
Sbjct 560 ACGGCTTCTCTCATGACGACGCCGATAAGCAAGTTCGTAAAGCCTTGTTGAAGGGTCAGA 619
Query 648 TACACGTGGAGCACATGTGTAGCAACGCAT-TAGCAATGATCAAGAACATGACAGAAACC 706
||||||| ||||||||||| |||||||| | |||||||||||||||||||||| || ||
Sbjct 620 TACACGTAGAGCACATGTGCAGCAACGC-TCTAGCAATGATCAAGAACATGACTGATACT 678
Query 707 GACATAGCCAACTTTGAGC--TAAG---AGATAA-GTC-TTCAACCTTCA-C-CAACAAC 757
|||||||||||||| |||| ||| | |||| || ||||| | | | ||| |
Sbjct 679 GACATAGCCAACTTCGAGCAAAAAGCTAAAATAACCTCAAACAACCGTAAGCTCAAGGAG 738
Query 758 AACAA-CCGCAAGCTCAAGG-AG--GTTACCGGC-GA-C-TTAG-AC-AG--T--GATGG 804
| || | | || || | || | | || || | || | || || || | || ||
Sbjct 739 GAGAATCAGGAAACT-ACGGTGGCAGATATCGCCGGAGCGGGAGAACTAGACTCGGAGGG 797
Query 805 ATGGCCAAAGTGGTTATCCGTTGGAGACAGAAGGCTTCTTCAAGGG-TCAACAATTAAAG 863
|||||||| |||||||||| |||||| || |||||||||| |||| || | | ||||
Sbjct 798 ATGGCCAACTTGGTTATCCGCTGGAGATAGGAGGCTTCTTC-AGGGTTCGAGTGTGAAAG 856
Query 864 CAGACGCTACGGTGGCGGATGACGGAAGCGGTGAC-TTTACA-ACGGTAGCCGCGGCTGT 921
| ||||| || ||||| | |||||| |||||| || |||| | ||||| || || || ||
Sbjct 857 CCGACGCCACCGTGGCAGCTGACGGTAGCGGT-ACATTTA-AGACGGTGGCGGCTGCGGT 914
Query 922 GGCTGCGGCGCCAGAGAAGAGTAACAAGAGGTTTGTGATACATA-TAAAGGCAGGAGTTT 980
|| ||||| || || || ||||||||||||| ||||||||||| |||| || || ||||
Sbjct 915 TGCGGCGGCCCCGGAAAATAGTAACAAGAGGTATGTGATACATATTAAA-GCCGGGGTTT 973
Query 981 ATAGAGAGAATGTGGAAG-TGACGAAGAAGAAGACGAATATAATGTTCT-TGGGAGATGG 1038
|||||||||||||||| | || | |||||||| | |||||||||||| | ||||||||||
Sbjct 974 ATAGAGAGAATGTGGATGTTG-CAAAGAAGAAAAAGAATATAATGTT-TATGGGAGATGG 1031
Query 1039 CCGTGGC-AAAACTATTATCACTGGAAGTAGAAATGTCGTCGATGGAAGCACCACTTTCC 1097
|| | | | |||| ||||||| |||||| |||| |||||||| || |||||||||||||
Sbjct 1032 TCG-GACGAGAACTGTTATCACCGGAAGTCGAAACGTCGTCGACGGTAGCACCACTTTCC 1090
Query 1098 ACTCCGCTACTGTTGCTGCCGTCGGCGAGAGGTTTC-TAGCGCGTGACATCACATTCCAA 1156
| ||||| || |||||||| |||||||||| | ||| |||| ||||||||||| ||||||
Sbjct 1091 AGTCCGCCACCGTTGCTGCTGTCGGCGAGA-GATTCTTAGCTCGTGACATCACTTTCCAA 1149
Query 1157 AACACCGCCGGTCCGTCGAAGCATCAAGCGGTGGCTCTCCGAGTCGGATCAGATTTTTCC 1216
||||| || |||||||||||||| ||||||||||||||||| || || || ||||| |||
Sbjct 1150 AACACGGCGGGTCCGTCGAAGCACCAAGCGGTGGCTCTCCGTGTGGGTTCTGATTTCTCC 1209
Query 1217 GCTTTTTACCAA-TGCGACATGTTTGCTTATCAAGACACACTTTATGTCCACTCAAATCG 1275
|| || || ||| ||||||||||| ||||| |||||||| ||||| |||||||| || ||
Sbjct 1210 GCCTTCTA-CAATTGCGACATGTTAGCTTACCAAGACACTCTTTACGTCCACTCTAACCG 1268
Query 1276 TCAATTCTTTGTGAAATGTCA-CATAACCGGAACCGTCGATTTCATCTTCGGAAACGCAG 1334
||||||||| || || ||| | ||| ||||||||||||| ||||||||||| ||||| |
Sbjct 1269 TCAATTCTTCGTCAAGTGT-ATCATCGCCGGAACCGTCGACTTCATCTTCGGGAACGCCG 1327
Query 1335 CCG-CGGTTTTACAAGACTGCGATATAAATGCACGCAGACCAAATTCCGGTCAGAAAAAC 1393
||| | || | |||||||| || || | || ||| | || || ||||| |||||||||
Sbjct 1328 CCGTC-GTGCTCCAAGACTGTGACATTCACGCTCGCCGCCCCAACTCCGGCCAGAAAAAC 1386
Query 1394 ATGGTTACCGCCCAAGGACGGTCTGATCCGAATCAAAACACGGGGATTGTGATCCAGAAT 1453
||||| || || || ||| | | ||||| || || ||||| ||||| || ||||||||
Sbjct 1387 ATGGTCACGGCTCAGGGAAGAACGGATCCAAACCAGAACACAGGGATCGTTATCCAGAAA 1446
Query 1454 TGTCGTATTGGTGGCACGTCGGATCTT-TTGGCCGTGAAAGGAACG-TTCCCGACGTATC 1511
||| | || |||| |||||| ||| || | | |||||||| | | ||||| ||||| |
Sbjct 1447 TGTAGGATCGGTGCCACGTCAGAT-TTACAGTCAGTGAAAGGTA-GTTTCCCTACGTACC 1504
Query 1512 TTGGTCGTCCTTGGAAGGAATATTCACGGACGGTGATAATGCAATCGGATATATCCGACG 1571
||||||| || |||||||| ||||| | |||||||||||||| |||| ||| |||||||
Sbjct 1505 TTGGTCGGCCGTGGAAGGAGTATTCGCAAACGGTGATAATGCAGTCGGCTATCTCCGACG 1564
Query 1572 TGATCCGACCCGAAGGATGG-CATGAGTGGAGCGGGAGTTTTGCGTTGGACACTCTAACT 1630
|||||||||||||||| ||| | |||||||| ||||| |||||||||| ||||||| |||
Sbjct 1565 TGATCCGACCCGAAGGGTGGTC-TGAGTGGACCGGGACTTTTGCGTTGAACACTCTGACT 1623
Query 1631 TATAGAGAGTATTTGAATAGAGGAGGAGGGGCAGGAACTGCAAATAGAGTGAAGTGGAAG 1690
|||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||| |
Sbjct 1624 TATAGAGAGTATGCGAATACAGGAGCAGGGGCTGGAACTGCAAATAGAGTGAAGTGGAGG 1683
Query 1691 GGCTATAAGGTAATTACAAG-TGATACAGAAGCTCAGCCATTTACGGCTGGTCAGTTTAT 1749
|||| ||| |||||||| | || | | |||||||| || ||||||||||||||||||
Sbjct 1684 GGCTTTAAAGTAATTAC-GGCTGCTGCTGAAGCTCAAAAATATACGGCTGGTCAGTTTAT 1742
Query 1750 TGGTGGTGGAGGCTGGTTAGCGTCGACCGGTTTTCCTTTCTCGTTAAGTCTTTGA 1804
||||||||||||||||||| ||||||||||||| || |||||| | ||||||||
Sbjct 1743 TGGTGGTGGAGGCTGGTTATCGTCGACCGGTTTCCCCTTCTCGCTCGGTCTTTGA 1797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73209450890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5