BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53840.1 Length=2058 Score E Sequences producing significant alignments: (Bits) Value Ahg314697 jgi|Araly1|314697|fgenesh1_pm.C_scaffold_1003477 2651 0.0 > Ahg314697 jgi|Araly1|314697|fgenesh1_pm.C_scaffold_1003477 Length=1758 Score = 2651 bits (1435), Expect = 0.0 Identities = 1657/1765 (94%), Gaps = 11/1765 (1%) Strand=Plus/Plus Query 89 ATGGATTCAGTGAACTCCTTCAAAGGATATGGAAAAG-TAGACGAAGCTCAAGATTTAGC 147 |||||||| |||||||||||||||||||||||||||| || |||||||| |||||||||| Sbjct 1 ATGGATTCTGTGAACTCCTTCAAAGGATATGGAAAAGTTA-ACGAAGCTGAAGATTTAGC 59 Query 148 ATTGAAGAAAAAGACAAGAAAACGTCTACTTCTACTATCCATCTCCGTCGTAGTTCTCAT 207 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 60 ATTGAAGAAAAAAACAAGAAAACGTCTACTTCTGCTATCCATCTCCGTCGTAGTTCTCAT 119 Query 208 CGCCGTAATAATCGCCGCCGTAGTCGCCACCGTCGTTCACAAGAACAAAAACGAGTCAAC 267 |||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| Sbjct 120 CGCCGTAATAATCGCCGCCGTAGTCGCCACCGTCGTTCACAAAAAGAATAACGAGTCAAC 179 Query 268 ACCGAGTCCACCTCCCGAGTTAACACCATCCACTTCACTCAAAGCCATTTGCAGTGTAAC 327 ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 180 ACCGAGTTCACCTCCCGAGTTAACACCATCCACTTCACTCAAAGCCATTTGCAGCGTAAC 239 Query 328 TCGTTTCCCTGAATCTTGCATTTCAAGTATCTCAAAGCTTCCATCTTCCAACACAACAGA 387 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 240 TCGTTTCCCTGAATCTTGCATTTCAAGTATCTCAAAGCTTCCATCTTCCAACACATCAGA 299 Query 388 TCCAGAGACTCTATTCAAGCTCTCATTGAAAGTAATCATCGATGAGCTTGATTCGATTTC 447 |||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 300 TCCAGAGACTCTGTTTAAGCTCTCATTGAAAGTAATCATCGATGAGCTCGATTCGATTTC 359 Query 448 CGATTTACCGGAGAAGCTATCGAAAGAGACTGAAGACGAAAGAATCAAATCTGCGTTAAG 507 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 360 CGATTTACCGGAAAAGCTATCGAAAGAGACAGAAGACGAAAGAATCAAATCTGCGTTAAG 419 Query 508 GGTTTGTGGAGATCTGATCGAAGATGCTTTAGATCGACTCAACGACACTGTTTCCGCCAT 567 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 420 GGTTTGTGGAGATCTAATCGAAGATGCTTTAGATCGGCTCAACGACACTGTTTCCGCCAT 479 Query 568 TGATGACGAAGAAAAGAAGAAAACTTTGTCATCTTCCAAAATCGAAGATCTCAAAACTTG 627 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TGATGACGAAGGAAAGAAGAAAACTTTGTCATCTTCCAAAATCGAAGATCTCAAAACTTG 539 Query 628 GCTAAGCGCAACGGTAACAGATCACGAGACGTGTTTCGATTCGTTAGATGAGTTGAAACA 687 ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||| Sbjct 540 GCTAAGCGCAACGGTAACAGATCACGACACGTGTTTCGATACGTTAGACGAGTTAAAACA 599 Query 688 GAACAAAACAGAGTATGCGAACTCGACGATTACTCAGAATCTGAAATCGGCAATGAGTAG 747 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 600 GAACAAAACAGAGTATGCGAACTCGACGATCACTCAGAATCTGAAATCGGCAATGAGTAG 659 Query 748 ATCAACGGAGTTCACAAGTAACAGTCTTGCAATAGTATCGAAGATTCTTTCTGCGTTAAG 807 |||||| |||||||| || |||||||||||||| ||||||||||||||| |||||||||| Sbjct 660 ATCAACAGAGTTCACTAGCAACAGTCTTGCAATTGTATCGAAGATTCTTGCTGCGTTAAG 719 Query 808 CGATTTGGGGATTCCGATACACAGGAGAAGAAGACTGATGAGTCATCATCATCAGCAAAG 867 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 720 CGATTTGGGGATTCCGATTCACAGGAGAAGAAGACTGATGAG---TCATCATCAGCAAAG 776 Query 868 TGTGGATTTTGAGAAATGGGCACGACGGAGGTTGTTGCAAACGGCAG-GTTTAAAGCCTG 926 ||||||||||||| | |||||||| |||||||||||||| |||| || |||| |||||| Sbjct 777 TGTGGATTTTGAGGATTGGGCACGGCGGAGGTTGTTGCAGACGG-AGAGTTTGAAGCCTA 835 Query 927 ATGTGACGGTGGCGGGTGATGGAACCGGTGATGTGTTGACTGTGAATGAAGCGGTGGCTA 986 |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 836 ATGTGACGGTGGCGAGTGATGGAACCGGTGATGTGTTGACGGTGAATGAAGCGGTGGCGA 895 Query 987 AGGTGCCGAAGAAGAGTTTGAAGATGTTTGTGATTTATGTGAAGAGTGGAACTTATGTTG 1046 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 896 TGGTGCCGAAGAAGAGTTTGAAGATGTTTGTGATATATGTGAAGAGTGGAACTTATAAAG 955 Query 1047 AGAATGTTGTGATGGATAAGAGTAAATGGAACGTTATGATTTACGGTGACGGCAAAGGGA 1106 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 956 AGAATGTTGTGATGGATAAGAGTAAATGGAATGTTATGATTTACGGTGACGGCAAAGGAA 1015 Query 1107 AGACCATTATTTCCGGCAGCAAGAACTTCGTCGACGGGACTCCTACTTACGAAACGGCGA 1166 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 1016 AGACCATTATTTCCGGCGGTAAGAACTTCGTCGACGGGACTCCTACTTACGAAACGGCGA 1075 Query 1167 CGTTTGCTATACAAGGCAAAGGATTTATAATGAAGGATATTGGAATCATAAACACCGCGG 1226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1076 CGTTTGCTATACAAGGCAAAGGATTTATAATGAAGGATATTGGAATCATAAACACCGCCG 1135 Query 1227 GAGCAGCAAAACACCAAGCTGTGGCATTCCGATCAGGCTCTGATTTCTCAGTCTATTACC 1286 ||||| | ||||| || || || |||||||||||||| || ||||||||||||||||||| Sbjct 1136 GAGCAACGAAACATCAGGCGGTAGCATTCCGATCAGGGTCCGATTTCTCAGTCTATTACC 1195 Query 1287 AATGCTCATTCGATGGTTTTCAAGACACTCTTTACCCTCACTCCAACCGCCAATTCTACC 1346 ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1196 AATGCTCCTTCGACGGTTTTCAAGACACTCTTTACCCTCACTCCAACCGGCAATTCTACC 1255 Query 1347 GTGACTGCGACGTTACTGGGACAATCGACTTCATTTTCGGAAGTGCTGCGGTCGTTTTCC 1406 |||||||||||||||| || ||||||||||||||||| |||||||| || |||||||||| Sbjct 1256 GTGACTGCGACGTTACCGGAACAATCGACTTCATTTTTGGAAGTGCCGCCGTCGTTTTCC 1315 Query 1407 AAGGCTGCAAAATCATGCCTCGCCAGCCTCTTTCTAACCAATTCAACACCATAACCGCTC 1466 ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| Sbjct 1316 AAGGCTGCAAAATCATGCCACGGCAGCCTCTTCCTAACCAATTCAACACCATAACCGCTC 1375 Query 1467 AGGGCAAAAAAGATCCGAACCAAAGCTCGGGGATGTCGATTCAACGATGCACTATCTCCG 1526 ||||||||||||||||||| |||| ||| ||||||||||| || |||||||||||||||| Sbjct 1376 AGGGCAAAAAAGATCCGAATCAAAACTCCGGGATGTCGATCCAGCGATGCACTATCTCCG 1435 Query 1527 CAAACGGCAATGTGATTGCTCCCACGTATCTTGGCCGGCCGTGGAAGGAGTTTTCCACGA 1586 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1436 CAAATGGCAATGTGATTGCTCCCACGTATCTTGGCCGGCCGTGGAAGGATTTTTCCACGA 1495 Query 1587 CGGTTATTATGGAGACGGTGATTGGAGCAGTGGTTCGACCGTCCGGGTGGATGTCATGGG 1646 | || |||||||| || | ||||||| | |||||| |||||||||||||||||||||||| Sbjct 1496 CTGTAATTATGGAAACTGAGATTGGACCGGTGGTTAGACCGTCCGGGTGGATGTCATGGG 1555 Query 1647 TTTCTGGAGTTGATCCACCAGCAAGTATTGTCTACGGAGAGTATAAGAATACGGGCCCGG 1706 |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1556 TTTCCGGAGTTGATCCACCAGCAAGTATTGTGTACGGAGAGTATAAGAATACGGGTCCGG 1615 Query 1707 GTTCAGATGTAACGCA-GAGAGTTAAATGGGCTGGATATAAACCGGTTATGTCGGACGCC 1765 | || |||||||| || ||||||||||||||| ||||||||| |||||||||||||||| Sbjct 1616 GGTCGGATGTAAC-CAAGAGAGTTAAATGGGCCGGATATAAATCGGTTATGTCGGACGCT 1674 Query 1766 GAGGCTGCGAAGTTTACAGTGGCTACGCTTTTACACGGAGCTGATTGGATACCGGCAACA 1825 ||||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||| ||| Sbjct 1675 GAGGCTGCGAAGTTTACGGTGGCCACGCTTTTACATGGAGGTGATTGGATACCGGCGACA 1734 Query 1826 GGAGTGAT-CAATCAGCTATCTTAA 1849 ||||||| || ||| ||||||||| Sbjct 1735 GGAGTGACGCA-TCAACTATCTTAA 1758 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77399377840 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5