BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53840.1
Length=2058
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314697 jgi|Araly1|314697|fgenesh1_pm.C_scaffold_1003477 2651 0.0
> Ahg314697 jgi|Araly1|314697|fgenesh1_pm.C_scaffold_1003477
Length=1758
Score = 2651 bits (1435), Expect = 0.0
Identities = 1657/1765 (94%), Gaps = 11/1765 (1%)
Strand=Plus/Plus
Query 89 ATGGATTCAGTGAACTCCTTCAAAGGATATGGAAAAG-TAGACGAAGCTCAAGATTTAGC 147
|||||||| |||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 1 ATGGATTCTGTGAACTCCTTCAAAGGATATGGAAAAGTTA-ACGAAGCTGAAGATTTAGC 59
Query 148 ATTGAAGAAAAAGACAAGAAAACGTCTACTTCTACTATCCATCTCCGTCGTAGTTCTCAT 207
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 60 ATTGAAGAAAAAAACAAGAAAACGTCTACTTCTGCTATCCATCTCCGTCGTAGTTCTCAT 119
Query 208 CGCCGTAATAATCGCCGCCGTAGTCGCCACCGTCGTTCACAAGAACAAAAACGAGTCAAC 267
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 120 CGCCGTAATAATCGCCGCCGTAGTCGCCACCGTCGTTCACAAAAAGAATAACGAGTCAAC 179
Query 268 ACCGAGTCCACCTCCCGAGTTAACACCATCCACTTCACTCAAAGCCATTTGCAGTGTAAC 327
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 ACCGAGTTCACCTCCCGAGTTAACACCATCCACTTCACTCAAAGCCATTTGCAGCGTAAC 239
Query 328 TCGTTTCCCTGAATCTTGCATTTCAAGTATCTCAAAGCTTCCATCTTCCAACACAACAGA 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 240 TCGTTTCCCTGAATCTTGCATTTCAAGTATCTCAAAGCTTCCATCTTCCAACACATCAGA 299
Query 388 TCCAGAGACTCTATTCAAGCTCTCATTGAAAGTAATCATCGATGAGCTTGATTCGATTTC 447
|||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TCCAGAGACTCTGTTTAAGCTCTCATTGAAAGTAATCATCGATGAGCTCGATTCGATTTC 359
Query 448 CGATTTACCGGAGAAGCTATCGAAAGAGACTGAAGACGAAAGAATCAAATCTGCGTTAAG 507
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 CGATTTACCGGAAAAGCTATCGAAAGAGACAGAAGACGAAAGAATCAAATCTGCGTTAAG 419
Query 508 GGTTTGTGGAGATCTGATCGAAGATGCTTTAGATCGACTCAACGACACTGTTTCCGCCAT 567
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 GGTTTGTGGAGATCTAATCGAAGATGCTTTAGATCGGCTCAACGACACTGTTTCCGCCAT 479
Query 568 TGATGACGAAGAAAAGAAGAAAACTTTGTCATCTTCCAAAATCGAAGATCTCAAAACTTG 627
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGATGACGAAGGAAAGAAGAAAACTTTGTCATCTTCCAAAATCGAAGATCTCAAAACTTG 539
Query 628 GCTAAGCGCAACGGTAACAGATCACGAGACGTGTTTCGATTCGTTAGATGAGTTGAAACA 687
||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||
Sbjct 540 GCTAAGCGCAACGGTAACAGATCACGACACGTGTTTCGATACGTTAGACGAGTTAAAACA 599
Query 688 GAACAAAACAGAGTATGCGAACTCGACGATTACTCAGAATCTGAAATCGGCAATGAGTAG 747
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 GAACAAAACAGAGTATGCGAACTCGACGATCACTCAGAATCTGAAATCGGCAATGAGTAG 659
Query 748 ATCAACGGAGTTCACAAGTAACAGTCTTGCAATAGTATCGAAGATTCTTTCTGCGTTAAG 807
|||||| |||||||| || |||||||||||||| ||||||||||||||| ||||||||||
Sbjct 660 ATCAACAGAGTTCACTAGCAACAGTCTTGCAATTGTATCGAAGATTCTTGCTGCGTTAAG 719
Query 808 CGATTTGGGGATTCCGATACACAGGAGAAGAAGACTGATGAGTCATCATCATCAGCAAAG 867
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 720 CGATTTGGGGATTCCGATTCACAGGAGAAGAAGACTGATGAG---TCATCATCAGCAAAG 776
Query 868 TGTGGATTTTGAGAAATGGGCACGACGGAGGTTGTTGCAAACGGCAG-GTTTAAAGCCTG 926
||||||||||||| | |||||||| |||||||||||||| |||| || |||| ||||||
Sbjct 777 TGTGGATTTTGAGGATTGGGCACGGCGGAGGTTGTTGCAGACGG-AGAGTTTGAAGCCTA 835
Query 927 ATGTGACGGTGGCGGGTGATGGAACCGGTGATGTGTTGACTGTGAATGAAGCGGTGGCTA 986
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 836 ATGTGACGGTGGCGAGTGATGGAACCGGTGATGTGTTGACGGTGAATGAAGCGGTGGCGA 895
Query 987 AGGTGCCGAAGAAGAGTTTGAAGATGTTTGTGATTTATGTGAAGAGTGGAACTTATGTTG 1046
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 896 TGGTGCCGAAGAAGAGTTTGAAGATGTTTGTGATATATGTGAAGAGTGGAACTTATAAAG 955
Query 1047 AGAATGTTGTGATGGATAAGAGTAAATGGAACGTTATGATTTACGGTGACGGCAAAGGGA 1106
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 956 AGAATGTTGTGATGGATAAGAGTAAATGGAATGTTATGATTTACGGTGACGGCAAAGGAA 1015
Query 1107 AGACCATTATTTCCGGCAGCAAGAACTTCGTCGACGGGACTCCTACTTACGAAACGGCGA 1166
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGACCATTATTTCCGGCGGTAAGAACTTCGTCGACGGGACTCCTACTTACGAAACGGCGA 1075
Query 1167 CGTTTGCTATACAAGGCAAAGGATTTATAATGAAGGATATTGGAATCATAAACACCGCGG 1226
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1076 CGTTTGCTATACAAGGCAAAGGATTTATAATGAAGGATATTGGAATCATAAACACCGCCG 1135
Query 1227 GAGCAGCAAAACACCAAGCTGTGGCATTCCGATCAGGCTCTGATTTCTCAGTCTATTACC 1286
||||| | ||||| || || || |||||||||||||| || |||||||||||||||||||
Sbjct 1136 GAGCAACGAAACATCAGGCGGTAGCATTCCGATCAGGGTCCGATTTCTCAGTCTATTACC 1195
Query 1287 AATGCTCATTCGATGGTTTTCAAGACACTCTTTACCCTCACTCCAACCGCCAATTCTACC 1346
||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1196 AATGCTCCTTCGACGGTTTTCAAGACACTCTTTACCCTCACTCCAACCGGCAATTCTACC 1255
Query 1347 GTGACTGCGACGTTACTGGGACAATCGACTTCATTTTCGGAAGTGCTGCGGTCGTTTTCC 1406
|||||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||
Sbjct 1256 GTGACTGCGACGTTACCGGAACAATCGACTTCATTTTTGGAAGTGCCGCCGTCGTTTTCC 1315
Query 1407 AAGGCTGCAAAATCATGCCTCGCCAGCCTCTTTCTAACCAATTCAACACCATAACCGCTC 1466
||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||
Sbjct 1316 AAGGCTGCAAAATCATGCCACGGCAGCCTCTTCCTAACCAATTCAACACCATAACCGCTC 1375
Query 1467 AGGGCAAAAAAGATCCGAACCAAAGCTCGGGGATGTCGATTCAACGATGCACTATCTCCG 1526
||||||||||||||||||| |||| ||| ||||||||||| || ||||||||||||||||
Sbjct 1376 AGGGCAAAAAAGATCCGAATCAAAACTCCGGGATGTCGATCCAGCGATGCACTATCTCCG 1435
Query 1527 CAAACGGCAATGTGATTGCTCCCACGTATCTTGGCCGGCCGTGGAAGGAGTTTTCCACGA 1586
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1436 CAAATGGCAATGTGATTGCTCCCACGTATCTTGGCCGGCCGTGGAAGGATTTTTCCACGA 1495
Query 1587 CGGTTATTATGGAGACGGTGATTGGAGCAGTGGTTCGACCGTCCGGGTGGATGTCATGGG 1646
| || |||||||| || | ||||||| | |||||| ||||||||||||||||||||||||
Sbjct 1496 CTGTAATTATGGAAACTGAGATTGGACCGGTGGTTAGACCGTCCGGGTGGATGTCATGGG 1555
Query 1647 TTTCTGGAGTTGATCCACCAGCAAGTATTGTCTACGGAGAGTATAAGAATACGGGCCCGG 1706
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1556 TTTCCGGAGTTGATCCACCAGCAAGTATTGTGTACGGAGAGTATAAGAATACGGGTCCGG 1615
Query 1707 GTTCAGATGTAACGCA-GAGAGTTAAATGGGCTGGATATAAACCGGTTATGTCGGACGCC 1765
| || |||||||| || ||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1616 GGTCGGATGTAAC-CAAGAGAGTTAAATGGGCCGGATATAAATCGGTTATGTCGGACGCT 1674
Query 1766 GAGGCTGCGAAGTTTACAGTGGCTACGCTTTTACACGGAGCTGATTGGATACCGGCAACA 1825
||||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||| |||
Sbjct 1675 GAGGCTGCGAAGTTTACGGTGGCCACGCTTTTACATGGAGGTGATTGGATACCGGCGACA 1734
Query 1826 GGAGTGAT-CAATCAGCTATCTTAA 1849
||||||| || ||| |||||||||
Sbjct 1735 GGAGTGACGCA-TCAACTATCTTAA 1758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77399377840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5