BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53850.1
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474517 jgi|Araly1|474517|fgenesh2_kg.1__4471__AT1G53850.2 1520 0.0
Ahg478846 jgi|Araly1|478846|fgenesh2_kg.3__1547__AT3G14290.1 859 0.0
> Ahg474517 jgi|Araly1|474517|fgenesh2_kg.1__4471__AT1G53850.2
Length=974
Score = 1520 bits (823), Expect = 0.0
Identities = 920/966 (95%), Gaps = 9/966 (1%)
Strand=Plus/Plus
Query 67 GGGTTTTGATTCCGTTGTGCGAAGGACTTTAAGAGGTTTTGCAGATCGAAATCGGAAGAG 126
||||||||||||||||||||||| ||| || ||||||||||||||||||||||| || ||
Sbjct 12 GGGTTTTGATTCCGTTGTGCGAAAGAC-TT-AGAGGTTTTGCAGATCGAAATCGCAAAAG 69
Query 127 AAGAAGAAGATGTTTCTCACTAGAACTGAGTATGACAGAGGAGTGAACACTTTTTCTCCA 186
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 70 AAGAAGAAGATGTTTCTCACTAGAACTGAGTATGACAGAGGAGTCAACACTTTTTCTCCA 129
Query 187 GAAGGAAGGCTATTTCAAGTGGAATATGCCATTGAAGCTATCAAGCTTGGTTCTACTGCA 246
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 GAAGGAAGGCTGTTTCAAGTGGAATATGCCATTGAAGCTATCAAGCTTGGTTCTACTGCA 189
Query 247 ATTGGAGTAAAGACAAAAGAAGGAGTTGTGCTTGCTGTCGAGAAGCGTATCACGTCGCCA 306
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 190 ATTGGAGTAAAGACAAAAGAAGGAGTTGTGCTCGCTGTTGAGAAGCGTATCACTTCGCCA 249
Query 307 TTGCTGGAACCGAGCAGTGTGGAGAAGATTATGGAAATTGATGACCATATTGGTTGTGCT 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 TTGCTGGAACCGAGCAGTGTGGAGAAGATTATGGAAATTGATGACCATATTGGTTGTGCT 309
Query 367 ATGAGCGGTTTAATTGCTGACGCGCGCACACTTGTTGAGCATGCTAGAGTTGAAACTCAA 426
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 310 ATGAGCGGTTTAATTGCTGATGCGCGAACACTTGTTGAGCATGCTAGAGTTGAGACTCAA 369
Query 427 AACCATAGATTCTCGTATGGTGAGCCGATGACTGTAGAGTCCACAACACAAGCACTGTGT 486
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 370 AACCATAGATTCTCGTACGGTGAGCCGATGACTGTAGAGTCCACAACACAAGCGCTGTGT 429
Query 487 GATCTGGCTTTACGGTTTGGTGAAGGAGAGGAAGAATCAATGTCTCGGCCGTTTGGAGTA 546
|||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 430 GATCTGGCTTTACGATTTGGTGAAGGAGATGAAGAATCAATGTCTCGTCCATTTGGAGTA 489
Query 547 TCTCTTCTCATTGCTGGCCATGATGAAAATGGACCAAGCTTGTACTACACTGATCCTTCA 606
|| |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 490 TCACTTCTCATTGCTGGTCATGATGAAAACGGACCAAGCTTGTACTACACAGATCCTTCA 549
Query 607 GGAACATTCTGGCAGTGCAATGCAAAGGCAATTGGTTCAGGTTCTGAAGGAGCTGATAGC 666
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 550 GGAACATTCTGGCAGTGCAATGCAAAGGCAATTGGTTCAGGGTCAGAAGGAGCTGATAGC 609
Query 667 TCTCTTCAAGAGCAATTCAACAAAGATTTGTCTCTACAAGAAGCTGAGACTATCGCTGTA 726
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 TCTCTTCAAGAGCAATTTAACAAAGATTTGTCTCTACAAGAAGCTGAGACTATCGCTGTA 669
Query 727 TCTATCCTAAAGCAAGTTATGGAAGAAAAGGTGACTCCAAATAACGTGGATATTGCCAAG 786
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 670 TCTATCCTCAAGCAAGTTATGGAAGAAAAGGTGACTCCAAATAATGTGGATATTGCCAAG 729
Query 787 GTAGCACCAGCTTATCATCTCTACACTCCACAAGAAGTCGAAGCAGTCATCGCTCGTCTT 846
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 730 GTAGCACCAGCTTATCATCTCTACACTCCCCAAGAAGTCGAAGCAGTCATCGCTCGTCTA 789
Query 847 TGATTGAAAAAACTCAATTTGGGTAATTTACCTATCAGCTTGTGTCACAAAACTTGTTAC 906
|||| |||||| |||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 790 TGATGGAAAAATCTCAATTTGGGTAATTTACCTATCCGCTTGTGTCCCAAAACTTGTTAC 849
Query 907 TTTTGTCTGTTAGATTGAGGAT-CATGTCACATTTT-AGTCGGTTGTGTAAGAGAATCTT 964
|||||||||||||||||||||| ||| ||| ||||| |||| ||||||||||||||||||
Sbjct 850 TTTTGTCTGTTAGATTGAGGATTCATATCAGATTTTTAGTCTGTTGTGTAAGAGAATCTT 909
Query 965 TTG---G-CTCCCATGTCATTCAATAACCTTTCGGATTTGTGACTTATAAAATTTCCTTT 1020
||| | |||||||||||||||||||||| |||||||||||| ||| ||||||||||||
Sbjct 910 TTGTTTGTCTCCCATGTCATTCAATAACCTCTCGGATTTGTGA-TTAGAAAATTTCCTTT 968
Query 1021 CCTACC 1026
||||||
Sbjct 969 CCTACC 974
> Ahg478846 jgi|Araly1|478846|fgenesh2_kg.3__1547__AT3G14290.1
Length=913
Score = 859 bits (465), Expect = 0.0
Identities = 646/735 (88%), Gaps = 6/735 (1%)
Strand=Plus/Plus
Query 128 AGAAGAAGATGTTTCTCACTAGAACTGAGTATGACAGAGGAGTGAACACTTTTTCTCCAG 187
|||||||||||||||||||||| |||||||||||||||||||| || || |||||||| |
Sbjct 30 AGAAGAAGATGTTTCTCACTAGGACTGAGTATGACAGAGGAGTCAATACCTTTTCTCCTG 89
Query 188 AAGGAAGGCTATTTCAAGTGGAATATGCCATTGAAGCTATCAAGCTTGGTTCTACTGCAA 247
|||| | || ||||| || || ||||||||||| ||||||||||||||||||||||| |
Sbjct 90 AAGGTCGTCTCTTTCAGGTTGAGTATGCCATTGAGGCTATCAAGCTTGGTTCTACTGCTA 149
Query 248 TTGGAGTAAAGACAAAAGAAGGAGTTGTGCTTGCTGTCGAGAAGCGTATCACGTCGCCAT 307
|||| |||||||| ||||| || ||||| ||||| |||||||||||||| || ||||| |
Sbjct 150 TTGGCGTAAAGACGAAAGAGGGGGTTGTTCTTGCAGTCGAGAAGCGTATTACTTCGCCTT 209
Query 308 TGCTGGAACCGAGCAGTGTGGAGAAGATTATGGAAATTGATGACCATATTGGTTGTGCTA 367
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 210 TGCTGGAACCGAGCAGTGTTGAGAAGATTATGGAAATTGATGACCATATAGGTTGTGCCA 269
Query 368 TGAGCGGTTTAATTGCTGACGCGCGCACACTTGTTGAGCATGCTA-GAGTTGAAACTCAA 426
|||| ||| | |||||||||||||| ||||||||||||||||| | |||| || || |||
Sbjct 270 TGAGTGGTCTGATTGCTGACGCGCGAACACTTGTTGAGCATGC-ACGAGTAGAGACCCAA 328
Query 427 AACCATAGATTCTCGTATGGTGAGCCGATGACTGTAGAGTCCACAACACAAGCACTGTGT 486
||||| || ||||||||||||||||| ||||||||||| || ||||||||||| |||||
Sbjct 329 AACCACAGGTTCTCGTATGGTGAGCCAATGACTGTAGAATCTACAACACAAGCGTTGTGT 388
Query 487 GATCTGGCTTTACGGTTTGGTGAAGGAGAGGAAGAATCAATGTCTCGGCCGTTTGGAGTA 546
||||| ||||||||||||||||||||||| ||||| ||||||||||| || |||||||||
Sbjct 389 GATCTTGCTTTACGGTTTGGTGAAGGAGATGAAGAGTCAATGTCTCGTCCATTTGGAGTA 448
Query 547 TCTCTTCTCATTGCTGGCCATGATGAAAATGGACCAAGCTTGTACTACACTGATCCTTCA 606
|| ||||||||||| || ||||||||||||||||| ||| |||||||||| ||||| ||
Sbjct 449 TCCCTTCTCATTGCCGGGCATGATGAAAATGGACCGAGCCTGTACTACACAGATCCATCG 508
Query 607 GGAACATTCTGGCAGTGCAATGCAAAGGCAATTGGTTCAGGTTCTGAAGGAGCTGATAGC 666
|||||||||||||| ||||| |||||||||||||| ||||| || ||||||||||||||
Sbjct 509 GGAACATTCTGGCAATGCAACGCAAAGGCAATTGGGTCAGGCTCAGAAGGAGCTGATAGT 568
Query 667 TCTCTTCAAGAGCAATTCAACAAAGATTTGTCTCTACAAGAAGCTGAGACTATCGCTGTA 726
||||| ||||||||||||||||| ||| | |||| ||||||||||| || |||||||||
Sbjct 569 TCTCTCCAAGAGCAATTCAACAAGGATATAACTCTTCAAGAAGCTGAAACAATCGCTGTA 628
Query 727 TCTATCCTAAAGCAAGTTATGGAAGAAAAGGTGACTCCAAATAACGTGGATATTGCCAAG 786
|||||||| |||||||| ||||||||||||||||||||||| || || || ||||||||
Sbjct 629 TCTATCCTTAAGCAAGTAATGGAAGAAAAGGTGACTCCAAACAATGTCGACATTGCCAAA 688
Query 787 GTAGCACCAGCTTATCATCTCTACACTCCACAAGAAGTCGAAGCAGTCATC-GCTCGTCT 845
|| |||||||||||||| ||||||||||| || || || ||||| |||||| | ||||||
Sbjct 689 GTCGCACCAGCTTATCACCTCTACACTCCTCAGGAGGTTGAAGCCGTCATCAG-TCGTCT 747
Query 846 TTGATTGAAA-AAAC 859
||| |||| ||||
Sbjct 748 ATGAA-GAAATAAAC 761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38199162834
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5