BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53860.1
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474518 jgi|Araly1|474518|fgenesh2_kg.1__4472__AT1G53860.1 2239 0.0
Ahg896392 jgi|Araly1|896392|Al_scaffold_0005_358 828 0.0
> Ahg474518 jgi|Araly1|474518|fgenesh2_kg.1__4472__AT1G53860.1
Length=1446
Score = 2239 bits (1212), Expect = 0.0
Identities = 1371/1448 (95%), Gaps = 10/1448 (1%)
Strand=Plus/Plus
Query 1 CAACTAAACCAAAATAATCCAACAGTGGTAGAAACAAAACAAAAGAAAACTCCATGGACT 60
||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1 CAACTAAACCAAAATAAACCAACAGTAGTAGAAACAAAACAAAAGAAAACTCTATGGACA 60
Query 61 TCACAAGAAACAGCAACACCAAGCTCCATCCCCAAACTCAGCTTCTGTTTCCCCCTAATA 120
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct 61 TCACAAGAAACAGCAACACCAAGCTCCATCTCCAAACTCAGCTTCTGTTTCCTCCTAAGA 120
Query 121 TGGAGAAAAACTCAAATGTTAGCGCCAACCCATTTGCAGAAGACTCACTTACAAGCAGAA 180
||||||||| ||||||||||||| | || ||||||| |||||| |||||| ||| |||||
Sbjct 121 TGGAGAAAACCTCAAATGTTAGCACAAATCCATTTGGAGAAGATTCACTTGCAAACAGAA 180
Query 181 TCAATCTAAAGGAAACTACAGATTTCATCAAGTCACTTCCAATTTCATCAAACCAAAGCA 240
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 181 TCAACCTAAAGGAAACTACAGATTTCATAAAGTCACTGCCAATTTCATCAAACCAAAGCA 240
Query 241 GT---AGTAGCAGCA--A-TGAGATGGTAAACGAGAGAAGACCAAGTTTCTCATCACAAA 294
|| |||||||||| | ||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 241 GTAGCAGTAGCAGCAGCAGTGAGATGTTAAACGAGAGAAGACCAAGTGTCTCATCGCAAA 300
Query 295 AGAGCATTGGAGAAGGAAGAAGCAATGGACAAAGAAGATTGATGTTAATGGAGTCTCCTT 354
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 AGAGCATTGGAGAAGGAAGAAGCAATGGACAGAGAAGATTGATGTTAATGGAGTCTCCTT 360
Query 355 GTACTCCAGGTAGAGGAGTCTTCAGTTTCAGTAGCAATGTCTCTGGTAGAAGAAGAAACT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTACTCCAGGTAGAGGAGTCTTCAGTTTCAGTAGCAATGTCTCTGGTAGAAGAAGAAACT 420
Query 415 TCCCTTCTAAATGGATTGATGCTGAGAAATGGGTCACTTCCTCTGGTCATGACTCTCCAG 474
| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 421 TTCCTTCTAAATGGATTGATGCTGAGAAATGGGTCACTTCCTCCGGTCATGATTCTCCAG 480
Query 475 CACATTCTCTCAAAAACAACCAATTTGATGGGTTTAAACACCAGGTGGAAGTTGTATACT 534
||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| || |
Sbjct 481 CACATTCCCTCAAAAACACCCAATTTGATGGGTTCAAACACCAGGTGGAAGTTGTTTATT 540
Query 535 CAGAGAAATCTAGGGTTACAGAAGAATGTTTCCATGGATCTGTCTCATTATCTCCACAAG 594
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAGAGAAATCTAGGGTTACGGAAGAATGTTTCCATGGATCTGTCTCATTATCTCCACAAG 600
Query 595 ATCTTATCCTTAAAGATAAGTTAGCAAACGAAGTTCCTCAGATTCTTCCATCAACGGAAG 654
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 ATCTTATCCTTAAAGATAAGTTAGCAAACGAAGTTCCACAGATTCTTCCATCAACGGAAG 660
Query 655 GGTTTATATTCAAAGATTCCGACAAGTTTCTCCGGTACGAGGAAGCTCAAGTTCAACACA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGTTTATATTCAAAGATTCCGACAAGTTTCTCCGGTACGAGGAAGCTCAAGTTCAACACA 720
Query 715 GAGACATGGGAACAGAGATGACACCAATAGGAAGTGTAACGACTTCAAGATGTCACACGC 774
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 721 GAGACATGGGAACAGAGATGACACCAATCGGAAGTGTAACAACTTCAAGATGTCACACGC 780
Query 775 CGTTTAAAAGTTCCTCTCCAGCGAGACACAACACGCCTTCTCAATTGTCTGGTCCGTTAA 834
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 781 CGTTTAAAAGTTCCTCTCCGGCGAGACACAACACGCCTTCGCAATTGTCTGGTCCGTTAA 840
Query 835 CGGAAACCAAAAACGTTATAGATATATCCGAGTTCGAAGACAAGCTTAGACTCAGTGGGT 894
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 841 CGGAAACTAAAAACGTTATAGATATATCCGAGTTCGCAGACAAGCTTAGACTCAGTGGGT 900
Query 895 CATCAACGAGTCAGTATTGTTACTCGGTGACGAGTCATTGGAACTCGagagaagaagaag 954
|| || ||||||| |||||| |||||||||||||||| ||||||||||| ||||||||||
Sbjct 901 CAACAGCGAGTCACTATTGTAACTCGGTGACGAGTCACTGGAACTCGAGGGAAGAAGAAG 960
Query 955 aagaagagaTATCGAAGAGTTTAAGACATTTCGATATGGAGAGTGAGTTAAGGAGAAGTG 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAGAAGAGATATCGAAGAGTTTAAGACATTTCGATATGGAGAGTGAGTTAAGGAGAAGTG 1020
Query 1015 TGTCTGAATCTAAAGCTCCTTTATGGGATGATGAAGACGACAAGATCAAGTTTTGTCAAA 1074
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1021 TTTCTGAATCTAAAGCTCCTTTATGGGATGATGAAGACGACAATATCAAGTTTTGTCACA 1080
Query 1075 GGTATCAAAGAGAAGAGGCCAAAATTCAAGCATGGGTTAATCTTGAAAACGCTAAAGCCG 1134
|||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| |
Sbjct 1081 GGTATCAAAGAGAAGAAGCCAAAATCCAGGCATGGGTTAATCTTGAAAACGCTAAAGCAG 1140
Query 1135 AAGCTCAATCTAGAAAGCTTGAGGTGAAAATACAGAAGATGAGATCAAATTTAGAGGAGA 1194
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1141 AAGCTCAATCCAGAAAACTTGAGGTGAAAATACAGAAGATGAGATCAAATTTGGAGGAGA 1200
Query 1195 AATTAATGAAGAGAATGGATATGGTGCACCGGAGAGCAGAAGATTGGAGAGCTACGGCGA 1254
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1201 AATTGATGAAGAGAATGGATATGGTGCACCGCAGAGCAGAAGATTGGAGAGCTACGGCGA 1260
Query 1255 GGCAGCAACATGTTGAGCAGATGCAGAAAGCGGCCGAGACGGCGAGGAAATTGACAAACC 1314
|||| ||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 1261 GGCAACAACACGTTGAGCAGATGCATAAAGCGGCCGAGACTGCGAGGAAGTTGACAAACC 1320
Query 1315 GCCGAGGCTATTTGGTTACCGGCCGTAGCTCATGTGGTTGTCTACCTTGCAATAATACTT 1374
|||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1321 GCCGTGGCTATTTGGTTACCGGCCGTAGCTCATGCGGTTGTTTACCTTGCAATAATACTT 1380
Query 1375 GTCATTAACTCAG--TCAAAGTAAAAGAGAGTAAAATACACATAAACAAACACAAGAAAT 1432
|||||||| ||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GTCATTAAAGCAGAGTTAAA--AAAAGAGAGTAAAATACACATAAACAAACACAAGAAAT 1438
Query 1433 TACTGTTT 1440
||||||||
Sbjct 1439 TACTGTTT 1446
> Ahg896392 jgi|Araly1|896392|Al_scaffold_0005_358
Length=549
Score = 828 bits (448), Expect = 0.0
Identities = 502/528 (95%), Gaps = 3/528 (1%)
Strand=Plus/Plus
Query 131 CTCAAATGTTAGCGCCAACCCATTTGCAGAAGACTCACTTACAAGCAGAATCAATCTAAA 190
||||||||||||| | |||||||||| ||||||||||||| ||| ||||||||| |||||
Sbjct 18 CTCAAATGTTAGCACAAACCCATTTGGAGAAGACTCACTTGCAAACAGAATCAACCTAAA 77
Query 191 GGAAACTACAGATTTCATCAAGTCACTTCCAATTTCATCAAACCAAAGCAGTAGTAGCAG 250
|||||||||||||||||| |||||||| |||| ||||||||||||||||||||| |||||
Sbjct 78 GGAAACTACAGATTTCATAAAGTCACTGCCAAATTCATCAAACCAAAGCAGTAGCAGCAG 137
Query 251 CA--A-TGAGATGGTAAACGAGAGAAGACCAAGTTTCTCATCACAAAAGAGCATTGGAGA 307
|| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 138 CAGCAGTGAGATGGTAAACGAAAGAAGACCAAGTTTCTCATCACAAAAGAGCATTGGAGA 197
Query 308 AGGAAGAAGCAATGGACAAAGAAGATTGATGTTAATGGAGTCTCCTTGTACTCCAGGTAG 367
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 198 AGGAAGAAGCAATGGACAGAGAAGATTGATGTTAATGGAGTCTCCTTGTACTCCAGGTAG 257
Query 368 AGGAGTCTTCAGTTTCAGTAGCAATGTCTCTGGTAGAAGAAGAAACTTCCCTTCTAAATG 427
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 258 AGGAGTCTTCAGTTTCAGTAGCAATGTCTCGGGTAGAAGAAGAAACTTTCCTTCTAAATG 317
Query 428 GATTGATGCTGAGAAATGGGTCACTTCCTCTGGTCATGACTCTCCAGCACATTCTCTCAA 487
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 318 GATTGATGCTGAGAAATGGGTCACTTCCTCCGGTCATGATTCTCCAGCACATTCCCTCAA 377
Query 488 AAACAACCAATTTGATGGGTTTAAACACCAGGTGGAAGTTGTATACTCAGAGAAATCTAG 547
||||| |||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 378 AAACACCCAATTTGATGGTTTTAAACACCAGGTGGAAGTTGTTTATTCAGAGAAATCTAG 437
Query 548 GGTTACAGAAGAATGTTTCCATGGATCTGTCTCATTATCTCCACAAGATCTTATCCTTAA 607
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 GGTTACGGAAGAATGTTTCCATGGATCTGTCTCATTATCTCCACAAGATCTTATCCTTAA 497
Query 608 AGATAAGTTAGCAAACGAAGTTCCTCAGATTCTTCCATCAACGGAAGG 655
|||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 498 AGATAAGTTAGCAAACGAAGTTCCACAGATTCTTCCATCAACGGAAGG 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5