BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53900.1
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914578 jgi|Araly1|914578|Al_scaffold_0001_4832 2662 0.0
Ahg476363 jgi|Araly1|476363|fgenesh2_kg.2__1493__AT1G72340.1 619 2e-176
Ahg314700 jgi|Araly1|314700|fgenesh1_pm.C_scaffold_1003480 569 2e-161
> Ahg914578 jgi|Araly1|914578|Al_scaffold_0001_4832
Length=1734
Score = 2662 bits (1441), Expect = 0.0
Identities = 1649/1748 (94%), Gaps = 19/1748 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAAGATTCATCCTGACAAGGCGTTTCCTGTGGATTTTAGCGTGGGAGAAGGCAAG 60
||||||||||||||||||||||||| |||| | ||||||| ||||| |||||||| ||||
Sbjct 1 ATGGTGAAGATTCATCCTGACAAGGTGTTTACGGTGGATTCTAGCGCGGGAGAAGACAAG 60
Query 61 ACTTCGCCGTACTTAACGACGGAGAAAGAGAGTTTCACGATTTGGATGAGATCTCTTGTG 120
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 ATTTCGCCGTACTTAACGACGGAGAAAGAGAGTTTCACAATTTGGATGAGATCTCTTGTG 120
Query 121 TTTCATAGTAAAGGCTGCACAGTTTTTGATTCCAAAGGAAACTTAATCTATCGAGTGGAT 180
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 TTTCATAGCAAAGGCTGCACAGTTTATGATTCCAAAGGAAACTTAATCTATCGAGTGGAT 180
Query 181 AATTATAACTCCAAGAGTTGTAGTGAAGTTTACCTTATGGACTTATACGGCAAAATCTTG 240
|||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||
Sbjct 181 AATTATAACTCCAAGAGTTGCAGTGAAGTTTACCTTATGGATTTATTCGGCAAAATCTTG 240
Query 241 TTTACATTACGTCAAAAGAAATTGGGATTATTCAAATCTTGGAAAGGATATAACTCAACC 300
||||| || ||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 241 TTTACGTTGCGTCAAAAGAAATTGAGATTATTCAAATCTTGGGAAGGATATAACTCAACC 300
Query 301 GGGACAAGATTTCAACTAAGAAAAAACTTCAAGATATTGCCAAAG-GGTTCATCTTCATC 359
||||||||||||| ||||||||| ||||||||||||| ||| ||| ||||||||||| ||
Sbjct 301 GGGACAAGATTTCGACTAAGAAAGAACTTCAAGATATCGCC-AAGAGGTTCATCTTCGTC 359
Query 360 ATACAAAGTTGTAATGGGATCGCGTATAG-T--TGATGGTGATCATCAATCTTGTTATAA 416
||||||||||||||||| | |||| | || | ||||| | | || ||||||||||||||
Sbjct 360 ATACAAAGTTGTAATGGTACCGCGCAGAGCTAATGATGATCAACAACAATCTTGTTATAA 419
Query 417 GATTGTAAAACGCAAATCGGTTTTCACAATCGAGGATGGATCAGGAAGATTATTGGCAGA 476
|||||||| ||||||||| |||||||||||||||||||||| || |||||| |||||||
Sbjct 420 GATTGTAAGCCGCAAATCGATTTTCACAATCGAGGATGGATCGGGTAGATTAATGGCAGA 479
Query 477 AGTTAAAAAGAAACAATCAAATATCAAAAGTTTAGATCTTGGGAAAGATGTATTAACAAT 536
|||||||||||||||||| | |||||||||||| ||||| || |||||||| ||||||||
Sbjct 480 AGTTAAAAAGAAACAATCGAGTATCAAAAGTTTGGATCTCGGAAAAGATGTGTTAACAAT 539
Query 537 GATGGTGGAGCCACAACTTGAAACTGAGATTTTCGAAGAATTCATCAAAATGTGGAGAGA 596
|||||||||| | | || | | |||||||||||||||| |||||||||||||||
Sbjct 540 GATGGTGGAG-C-C-AC-----A---A-ATTTTCGAAGAATTCACCAAAATGTGGAGAGA 587
Query 597 ATCGGCTTCGTTTATCCTCGATAAGCATCAGAACAACAAACCCATTTCTCTAACTCATTC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 ATCGGCTTCGTTTATCCTCGATAAGCATCAGAACAACAAACCCATTTCTCTAACTCATTC 647
Query 657 AATTGATTCTCCTCCACCACCATCTGCTTCAATGGCGGATGAAAACCCTAACCCTAATCC 716
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 AACTGATTCTCCTCCACCACCATCTGCTTCAATGGCGGATGAAAACCCTAACCCTAATCC 707
Query 717 TATTTCGGCTTATTACCAAACCAGAGCGGCGCATCATGGAATTGTGACTAGCGAGTGG-T 775
||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |
Sbjct 708 TATATCGGCTTATTACCAAACCAGAGCGGCGCATCATGGGATCGTGACCAGCGAGTGGCT 767
Query 776 TGGAGCAGGCTCAAGCCGCGGTTCGACGTTACCCTGATCGTGATTCCTTAGTTTCGGGAA 835
| || |||||||||||||||||||||||||| ||||| | |||||||| |||||||||||
Sbjct 768 T-GAACAGGCTCAAGCCGCGGTTCGACGTTATCCTGACCATGATTCCTCAGTTTCGGGAA 826
Query 836 GACCCTTTAGCGTGATTGAGGACTTTAATAGTTGGAGACAGCAACCTGATTTGGCGGAGG 895
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 827 GACCCTTTAGCGTGATTGAGGAGTTTAATAGTTGGAGACAGCAACCTGATTTGGCGGAGG 886
Query 896 CTGTTGCGGCGATTCGTGCTCTTGCGGCTGTTATTAGGGCTAGTGAAGCTACTACTATGA 955
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 887 CTGTTGCGGCGATTCGTGCTCTTGCGGCTGTAATTAGGGCTAGTGAAGCGACTACTATGA 946
Query 956 TGGAACTTGAAATTGAACTCAAGAAAGCTTCTGATACTCTGAAATCATGGGACACAACGT 1015
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
Sbjct 947 TGGAACTTGAAATTGAACTTAAGAAAGCTTCTGATACTTTGAAATCATGGGACACAACCT 1006
Query 1016 CGATATCCTTAACAGCGGGATGTGATCTATTCATGCGCTATGTGACTCGAACATCTGCTT 1075
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1007 CTATATCCTTAACAGCTGGATGTGATCTATTCATGCGCTACGTGACTCGAACATCTGCTT 1066
Query 1076 TAGAATTTGAGGACTTCAACTCTGCGAAATCCCGTGTGCTTGAACGTGCTGAGAAATTTG 1135
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1067 TGGAATTTGAGGACTTCAACTCTGCAAAATCCCGTGTGCTTGAACGTGCTGAGAAATTTG 1126
Query 1136 GGGAAATATCTTGCAAGGCCCGAACGATAATTGCAATGCTTAGTCAAGATTTCATATTTG 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 GGGAAATATCTTGCAAGGCCCGAACGATAATTGCAATGCTTAGTCAAGATTTCATATTTG 1186
Query 1196 ATGGGTGTACTATTCTGGTCCATGGTTTCTCCAGAGTTGTGTTTGAAATACTAAAGACAT 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 ATGGGTGTACTATTCTGGTCCATGGTTTCTCCAGAGTTGTGTTTGAAATACTAAAGACAT 1246
Query 1256 CAGCGCAAAACAAGAAACTCTTTCGAGTGTTGTGCACAGAGGGAAGGCCAGATAAAACAG 1315
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1247 CAGCGCAAAACAAGAAACTCTTTCGAGTTTTGTGCACAGAGGGAAGGCCAGATAAAACAG 1306
Query 1316 GTGTACTGCTAGCTAACGAGCTTGCAAAACTTGATATTCCTGTGAAGCTTCTGATCGATT 1375
||||||||||||| | |||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1307 GTGTACTGCTAGCCAGCGAGCTCGCAAAACTGGATATTCCTGTGAAGCTTCTGATCGATT 1366
Query 1376 CAGCCGTGGCCTATAGCATGGATGAAGTAGACATGGTGTTTGTTGGAGCTGATGGAGTAG 1435
||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1367 CAGCCGTAGCCTATAGCATGGATGAAGTAGACATGGTATTTGTTGGAGCTGACGGAGTGG 1426
Query 1436 TTGAAAGTGGCGGGATAATTAACATGATGGGAACTTACCAAATCGCCCTAGTCGCACAGA 1495
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1427 TTGAAAGTGGCGGGATAATTAACATGATGGGAACTTACCAAATCGCCCTCGTCGCACATA 1486
Query 1496 GTATGAATAAACCAGTCTATGTAGCTGCAGAGAGTTACAAGTTTGCACGGCTCTACCCGT 1555
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1487 GTATGAATAAACCAGTCTATGTAGCTGCAGAGAGTTACAAGTTTGCACGGCTCTACCCAT 1546
Query 1556 TGGATCAAAAGGACTTAGAACCAGCCTTGCGACCTATTGATTTCAGTGTTCCTGTTCCTC 1615
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1547 TGGATCAAAAGGACTTAGAACCGGCCTTGCGACCTATTGATTTCAATGTTCCTGTTCCTC 1606
Query 1616 CTAAGGTTGAGGTAGAAAGATCTGCAAGGGACTACACTCCTCCTCAGTACTTGACTCTAC 1675
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1607 CTAAGGTTGAGGTAGAAAGATCTGCAAGGGACTACACTCCTCCTCAGTACTTGACTCTGC 1666
Query 1676 TCTTCACTGATCTTGGTGTTCTCACTCCATCTGTAGTAAGTGACGAGCTTATTCAGCTTT 1735
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1667 TCTTCACTGATCTTGGTGCTCTCACTCCATCTGTAGTAAGTGATGAGCTTATTCAGCTTT 1726
Query 1736 ACTTGTAA 1743
||||||||
Sbjct 1727 ACTTGTAA 1734
> Ahg476363 jgi|Araly1|476363|fgenesh2_kg.2__1493__AT1G72340.1
Length=1180
Score = 619 bits (335), Expect = 2e-176
Identities = 701/877 (80%), Gaps = 28/877 (3%)
Strand=Plus/Plus
Query 868 TGGAGACAGCAACCTGATTTGGCGGAGGCTGTTGCGGCGATTCGTGCTCTTGCGGCTGTT 927
|||||| ||||||| ||| |||| ||||| || ||||| ||||| ||||| || || |||
Sbjct 288 TGGAGAAAGCAACCGGATCTGGCTGAGGCCGTCGCGGCTATTCGAGCTCTCGCTGCGGTT 347
Query 928 ATTAGGGCTAGTGAAGCTA-CTACTATGATGGAACTTGAAATTGAACTCAAGAAA-GCTT 985
||| | || || ||||||| | ||||||||||| ||||||||||| ||||| ||| ||||
Sbjct 348 ATTCGTGCGAGCGAAGCTAGC-ACTATGATGGAGCTTGAAATTGAGCTCAA-AAAGGCTT 405
Query 986 CTGATACTCTGAAATCATGGGACACAACGTCGATATCCTTAACAGCGGGATGTGATCTAT 1045
||||||| || ||||||||||||| ||| || || || || || || ||||| ||| | |
Sbjct 406 CTGATACACTCAAATCATGGGACAAAACATCAATCTCTTTGACTGCTGGATGCGATTTGT 465
Query 1046 TCATGC-GCTATGTGACTCGAACATCTGCTTTAGAATTTGAGGACTTCAACTCTGCGAAA 1104
| || | | || || || |||| ||||||||||||| || || ||||| || || |||
Sbjct 466 TTAT-CAGATACGTTACGAGAACCTCTGCTTTAGAATACGAAGATTTCAATTCAGC-AAA 523
Query 1105 -TCCCGTGTGCTTGAACGTGCTGAGAAATTTGGGGAAATATCTTGCAAGGCCCGAACGAT 1163
|| ||| | ||||||||||||||||||||||||||||| ||||||||||| || | |||
Sbjct 524 GTCTCGTCTTCTTGAACGTGCTGAGAAATTTGGGGAAATTTCTTGCAAGGCTCGTAGGAT 583
Query 1164 AATTGCAATGCTTAGTCAAGATTTCATATTTGATGGGTGTACTAT-TCTGGTCCATGGTT 1222
|| |||||||||||||||||||||||||| ||||| ||||| || | |||| |||||
Sbjct 584 TATCGCAATGCTTAGTCAAGATTTCATATTCGATGGTTGTACCATAT-TGGTTCATGGAC 642
Query 1223 TCTCCAGAGTTGTGTTTG-AAATACTAAAGACAT-CAGCGCAAAACAAGAAACTCTTTCG 1280
|||| |||||||| | || ||||||||||||| | | || |||||||| || ||||||||
Sbjct 643 TCTCAAGAGTTGT-TCTGGAAATACTAAAGAC-TGCTGCACAAAACAACAAGCTCTTTCG 700
Query 1281 AGTGT-TGTGCACAGAGGGAAGGCCAGATAAAACAGGTGTACTGCTAGCTAACGAGCT-T 1338
||| | | ||||||||||||||||| ||| |||||| || || || | | ||||| |
Sbjct 701 AGT-TCTCTGCACAGAGGGAAGGCCGGATGGAACAGGAGTTTTGTTATCGAGTGAGCTAT 759
Query 1339 GCAAAACTTGATATTCCTGTGAAGCTTCTGATCGATTCAGCCGTGGCCTATAGCATGGAT 1398
| || |||||||| || ||||| || ||| | |||||||| ||||| |||||||||||
Sbjct 760 -CGAAGCTTGATATCCCAGTGAAACTACTGCTTGATTCAGCTGTGGCGTATAGCATGGAC 818
Query 1399 GAAGTAGACATGGTGTTTGTT-GGAGCTGATGGAGTAGTTGAAAGTGGCGGGATAATTAA 1457
|| ||||||||||||||| || || || |||||||| || ||||| ||||| || || ||
Sbjct 819 GAGGTAGACATGGTGTTT-TTCGGGGCAGATGGAGTTGTAGAAAGCGGCGGTATTATCAA 877
Query 1458 CATGATGGGAACTTACCAAATCGCCCTAGTCGCACAGAGTATGAATAAACCAGTCTATGT 1517
|||||||||||| ||||||||||| || || || || || ||||| ||||| ||||||||
Sbjct 878 CATGATGGGAACATACCAAATCGCACTCGTGGCCCACAGCATGAACAAACCGGTCTATGT 937
Query 1518 AGCTGCAGAGAGTTACAAGTTTGC-ACGGCTCTACCCGTTGGATCAAAAGGACTTAGAAC 1576
|| || |||||||||||||| || | |||| ||||| || || ||||||||| | | ||
Sbjct 938 CGCCGCCGAGAGTTACAAGTTCGCTA-GGCTTTACCCATTAGACCAAAAGGACATGGCAC 996
Query 1577 CAGC-CTTGCGACCTATTGA-TTTCAGTGTTCCTG-TTCCTCCTAAGGTTGAGGTAGAAA 1633
|||| || | |||| || || ||| |||| | |||| | ||||| || ||||| |
Sbjct 997 CAGCGCT-GAGACCAATCGAATTTG-GTGTAAA-GATTCCGACAAAGGTGGAAGTAGAGA 1053
Query 1634 GATCTGCAAGGGACTACACTCCTCCTCAGTACTTGACTCTACTCTTCACTGATCTTGGTG 1693
| || || | ||||| ||||| ||||||||| | || || |||||||| || ||||| |
Sbjct 1054 GGTCAGCTCGAGACTATACTCCGCCTCAGTACCTAACGCTCCTCTTCACGGACCTTGGCG 1113
Query 1694 TTCTCACTCCATCTGTAGTAAGTGACGAGCTTATTCA 1730
||||| |||| |||||||| || || |||||||||||
Sbjct 1114 TTCTCTCTCCCTCTGTAGTTAGCGATGAGCTTATTCA 1150
> Ahg314700 jgi|Araly1|314700|fgenesh1_pm.C_scaffold_1003480
Length=651
Score = 569 bits (308), Expect = 2e-161
Identities = 482/564 (85%), Gaps = 20/564 (4%)
Strand=Plus/Plus
Query 1 ATGGTGAAGATTCATCCTGACAAGGCGTTTCCTGTGGATTTTAGCGTGGGAGAAGGCAAG 60
|||||||||||| ||||| || ||||||||| |||||| || | || | ||||| ||||
Sbjct 37 ATGGTGAAGATTTATCCTCACCTGGCGTTTCCGGTGGATATTGGTGTTGTAGAAGACAAG 96
Query 61 ACTT-CGCCGTACTTAACGACGGAGAAAGAGAGTTTCACGATTTGGATGAGATCTCTT-G 118
| || ||| ||||| |||| |||| |||||||||||||||||||||||| |||| || |
Sbjct 97 A-TTGTGCCCTACTTGACGAAGGAGCAAGAGAGTTTCACGATTTGGATGAAATCT-TTGG 154
Query 119 TGTTTCATAGTAAAGGCTGCACAGTTTTTGATTCCAAAGGAAACTTAATCTATCGAGTGG 178
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 TATTCCATAGCAAAGGCTGCACAGTTTTTGATTCCAAAGGAAACTTAATCTATCGAGTGG 214
Query 179 ATAATTATAACTCCAAGAGTTGTAGT---GAAGTTTACCTTATGGACTT-ATACGGCAAA 234
|||| ||||||||||||||||| ||| |||||||| ||||||| || |||||| |||
Sbjct 215 ATAACTATAACTCCAAGAGTTGCAGTAATGAAGTTTATTTTATGGA-TTCATACGGGAAA 273
Query 235 ATCTTGTTTACATTACGTCAAAAGAAATTGGGATTATTCAAATCTTGGAAAGGATATAAC 294
|| |||||||| |||||||||||||||| |||||| |||||||||||| |||||||||||
Sbjct 274 ATTTTGTTTACTTTACGTCAAAAGAAATCGGGATTCTTCAAATCTTGGGAAGGATATAAC 333
Query 295 TCAACCGGGACAAGATTTCAACTAAGAAAAAACTTCAAGATATTGCCAAAGGGTTCATCT 354
||||||||||| ||||||| ||||||||| | |||||||| ||||||| | | || |
Sbjct 334 TCAACCGGGACCAGATTTCGACTAAGAAAGATTTTCAAGATTTTGCCAA-GAG---AT-T 388
Query 355 TCATCATACAAAGTTGTAATGGGATCGCGTATAGTTGATGGTGATCATCAA---TCTTGT 411
|||| ||||||||||||||||||||||| ||||||||||||| | ||||| ||||||
Sbjct 389 -CATCTTACAAAGTTGTAATGGGATCGCGCATAGTTGATGGTGGTGATCAACAGTCTTGT 447
Query 412 TATAAGATTGTAAAACGCAAATCGGTTTTCACAATCGAGGATGGATCAGGAAGATTATTG 471
|||||||||||||| ||| || |||||| ||||| ||||||| || ||||||||| ||
Sbjct 448 TATAAGATTGTAAACCGCGGGTCCGTTTTCGCAATCAAGGATGGGTCGGGAAGATTAATG 507
Query 472 GCAGAAGTTAAAAAGAAACAATCAAATATCAAAAGTTTAGATCTTGG-GAAAGATGTATT 530
|||||||||||||| |||| ||| |||| | |||| |||||||| ||| ||||| ||
Sbjct 508 GCAGAAGTTAAAAATAAACTATCGGATATTAGTGGTTTGGATCTTGGAGAA-GATGTCTT 566
Query 531 AACAATGATGGTGGAGCCACAACT 554
|||||||||||||||||||||||
Sbjct 567 GACAATGATGGTGGAGCCACAACT 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73628443585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5