BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G53903.1

Length=631
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923953 jgi|Araly1|923953|scaffold_105234.1                        645    0.0  


> Ahg923953 jgi|Araly1|923953|scaffold_105234.1
Length=424

 Score =  645 bits (349),  Expect = 0.0
 Identities = 399/422 (95%), Gaps = 8/422 (2%)
 Strand=Plus/Plus

Query  55   CAATTC-CTAAAGATAGAGAGAATGACTAAAATCTCTGTTGGATTGCAACTTGTGACAAG  113
            |||||| | | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  3    CAATTCAC-AGAGATAGAGAGAATGACTAAAATCTCTGTTGGATTGCAACTTGTGAC-AG  60

Query  114  -AGATTCGAGGGAAAAACTAAACAATATAGTGATCAAATCTTCACTGAGACTAAACCGAT  172
             |||||| | |||||||| |||||| |||||||||||||||||||||||| |||||||||
Sbjct  61   CAGATTCAAAGGAAAAACCAAACAACATAGTGATCAAATCTTCACTGAGAATAAACCGAT  120

Query  173  CCAATCCAAACATCTCGGAGCTTTGTTTCCTTAAAACATGTCATCTCTGCAATAAACAAC  232
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  121  CCAATCCAAACATCTCGGAGCTTTGTTTCCTCAAAACATGTCATCTCTGCAATAAACAAC  180

Query  233  TCCATCAAGACAAAGATGTTTACATGTACAGAGGAGATTTGGGATTTTGTAGTAGAGAGT  292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TCCATCAAGACAAAGATGTTTACATGTACAGAGGAGATTTGGGATTTTGTAGTAGAGAGT  240

Query  293  GCAGAGAAAGTCAGATGTTGATTGATGATAGAAAAGAACTAGAGGCTTCGACGAAGATGA  352
            |||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||
Sbjct  241  GCAGAGAAAGTCAGATTTTGAGTGATGATAGAAAAGAATTAGAGGCTTCGACGAAGATGA  300

Query  353  TGTTGGCTTCGTACAGACGATGTAA-TAACGGCGCCGGAAAAAGCGAGTCTCG-GAATTT  410
            ||||||||||||| ||||||||||| |  ||||||||| |||||||||||||| || |||
Sbjct  301  TGTTGGCTTCGTATAGACGATGTAACTC-CGGCGCCGGGAAAAGCGAGTCTCGAGA-TTT  358

Query  411  GTTTGATGATCTCCGGCGACGACGTCAATTATTTATAGTTCCTTGAGGCTTCTTTAAGCA  470
            |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct  359  GTTTGATGATCTCCGGCGACGACGCCAATTATTTATAGTTCCTTGAGGCTTTTTTAAGCA  418

Query  471  AT  472
            ||
Sbjct  419  AT  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23102487702


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5