BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53910.1
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923954 jgi|Araly1|923954|scaffold_105235.1 1456 0.0
Ahg946686 jgi|Araly1|946686|scaffold_702915.1 119 7e-26
> Ahg923954 jgi|Araly1|923954|scaffold_105235.1
Length=1078
Score = 1456 bits (788), Expect = 0.0
Identities = 1019/1122 (91%), Gaps = 49/1122 (4%)
Strand=Plus/Plus
Query 111 CACCCTCAAGAATCGCCGCCATGTGTGGAGGAGCTATAATATCCGATTTCATTCCACCGC 170
||||||||||| || ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 CACCCTCAAGAGTCACCGACATGTGTGGAGGAGCTATAATCTCCGATTTCATTCCACCGC 60
Query 171 CGAGGTCTCGCCGTGTTACTAGCGAGTTTATTTGGCCGGATCTGAAGAAGAATTTGAAAG 230
||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 CGAGGTCTCGCCGTGTTACCAGCGAGTTTATTTGGCCGGATC------------------ 102
Query 231 GATCGAAGAAAAGCTCGAAGAATCGTTCGAATTTCTTCGATTTTGACGCTGAGTTCGAAG 290
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 103 --T-GAAGAAAAGCTCGAAGAATCGTTCGAATTTCTTTGATTTTGACGCTGAGTTCGAGG 159
Query 291 CTGATTTCCAAGGTTTCAAAGATGATTCGTCTATCGATTGCGATGATGATTTCGACGTCG 350
|||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||
Sbjct 160 CTGATTTCCAAGGTTTCAAAGATGATTCTTCTATTGATTGCGACGATGATTTCGATGTCG 219
Query 351 GTGATGTTTTCGCCGATGTGAAACCATTCGTTTTCACTTCGACTCCAAAACCCGCCGTCT 410
||||||||| |||||||||||||||||||||||||||||||||||| ||| |
Sbjct 220 GTGATGTTTCCGCCGATGTGAAACCATTCGTTTTCACTTCGACTCCGAAA--------C- 270
Query 411 CCGCCGCTGCGGAAGGTTCAGTTTTTGGTAAGAAAGTTACTGGCTTGGATGGGGACGCTG 470
|||||| | | |||||||||| |||||||||| || | | || |||||||| ||||
Sbjct 271 CCGCCG-T-C-GAAGGTTCAGCTTTTGGTAAG-AA---A---G-TT-GATGGGGAAGCTG 318
Query 471 AGAAATCTGCAAATAGGAAGAGGAAGAATCAGTACCGAGGGATTAGGCAACGTCCTTGGG 530
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 AGAAATCTGGAAAGAGGAAGAGGAAGAATCAGTACCGAGGGATTAGGCAACGTCCTTGGG 378
Query 531 GAAAATGGGCTGCTGAGATACGTGATCCAAGGGAAGGTGCTAGAATCTGGCTTGGAACGT 590
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 379 GCAAATGGGCTGCTGAGATACGTGATCCAAGAGAAGGTGCTAGAATCTGGCTTGGAACTT 438
Query 591 TCAAGACAGCTGAGGAAGCTGCTAGAGCTTACGATGCTGCAGCGCGGAGAATCCGTGGAT 650
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 439 TCAAGACAGCTGAGGAAGCTGCTAGAGCTTACGATGCTGCAGCGCGGAGGATCCGTGGAT 498
Query 651 CTAAAGCTAAGGTGAATTTCCCTGAAGAAAACATGAAGGCTAATTCTCAGAAACGCTCTG 710
||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||
Sbjct 499 CTAAAGCTAAGGTGAATTTCCCTGAGGAAAACCCCAAGGCTAGTTCTCAGAAACGCTCTG 558
Query 711 TGAAGGCTAATCTTCAGAAACCAGTGGCTAAACCTAACCCTAACCCAAGTCCAGCTTTGG 770
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 559 TGAAGGCTAATCTTCAGAAACCTGTGGCTAAACCTAACCCAAACCCAAGTCCTGCTTTGG 618
Query 771 TTCAGAA-CTCGAACATCTCCTTTGAAAATATGTGTTTCAT---GGAGGAGAAACACCAA 826
||||||| || ||||| ||||||||| |||||||||||||| ||||||||||||||||
Sbjct 619 TTCAGAACCT-GAACAACTCCTTTGACAATATGTGTTTCATGGAGGAGGAGAAACACCAA 677
Query 827 GTGAG-CAACAACAACAACAACCAGTTTGGGATGACAAACTCCGTTGATGCTGGATGTAA 885
|| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 678 -CAAGTGAACAACAACAGCAATCAGTTTGGGTTGACAAACTCCGTTGATGCTGGATGTAA 736
Query 886 TGGGTATCAGTATTTCAGCTCTGACCAGGGTAGTAATTCTTTCGATTGTTCGGAGTTTGG 945
|||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 737 CGGGTATCAGTATTTCAGCTCAGACCAGGGTAGTAATTCGTTCGATTGTTCTGAGTTTGG 796
Query 946 TTGGAGCGATCAAGCTCCGATAACTCCCGACATCTCTTCTGCGGTTATCAACAACAACAA 1005
|||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| |
Sbjct 797 TTGGAGCGATCAAGCTCCAATAACTCCCGACATCTCTTCTGCGCTTATCAACAGCAACGA 856
Query 1006 CTCAGCTCTGTTCTTTGAGGAAGCCAATCCAGCTAAGAAGCTCAAGTCTATGGATTTCGA 1065
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 CTCAGGTCTATTCTTTGAGGAAGCCAATCCAGCTAAGAAGCTCAAGTCTATGGATTTCGA 916
Query 1066 GACACCTTACAACAACACTGAATGGGACGCTTCACTGGATTTCCTCAACGAAGATGCTGT 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 GACACCTTACAACAACACTGAATGGGACGCTTCACTGGATTTCCTCAACGAAGATGCTGT 976
Query 1126 AACGACTCAGGACAATGGTGCAAACCCTATGGACCTATGGAGTATTGATGAAATTCATTC 1185
|||||||||||||||| ||||||||||||||||| ||||||| |||||||| ||||||||
Sbjct 977 AACGACTCAGGACAATTGTGCAAACCCTATGGACTTATGGAGCATTGATGAGATTCATTC 1036
Query 1186 CATGATTGGAGGAGTCTTCTGAAGAGATCCAGTTTCATGTAA 1227
|||||| |||||||||||||||||||||||| ||||| ||||
Sbjct 1037 CATGATCGGAGGAGTCTTCTGAAGAGATCCATTTTCAAGTAA 1078
> Ahg946686 jgi|Araly1|946686|scaffold_702915.1
Length=240
Score = 119 bits (64), Expect = 7e-26
Identities = 73/77 (95%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 155 GATTTCATTCCACCGCCGAGGTCTCGCCGTGTTACTAGCGAGTTTATTTGGCCGGATCTG 214
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 158 GATTTCATTTCACCGCCGAGGTCTCGCCGTGTTACCAGCGAGTTTATTTGGCCGGATCTG 217
Query 215 AAGAAGAA-TTTGAAAG 230
||||| || ||||||||
Sbjct 218 AAGAA-AACTTTGAAAG 233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59801684650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5