BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53920.1
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314703 jgi|Araly1|314703|fgenesh1_pm.C_scaffold_1003483 1760 0.0
> Ahg314703 jgi|Araly1|314703|fgenesh1_pm.C_scaffold_1003483
Length=1146
Score = 1760 bits (953), Expect = 0.0
Identities = 1062/1115 (95%), Gaps = 5/1115 (0%)
Strand=Plus/Plus
Query 58 CTCCTCCTTCATCTTCTTTATCGTCTCTTCTACCATTCTTTTTCTCGCCGGAAAATCCTC 117
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||| |||||
Sbjct 36 CTCCTCCTTCATCTTCTTTATCTTCTCTTCCACCATTATCTTTCTCGCCGGAAAGTCCTC 95
Query 118 GGCCAAAATTTCTCATAACGGTGACAATAATGTGACGGCCTTGTTCCTCTTTGGAGACTC 177
|||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 96 AGCCAAATTTTCTCACGACGGTGACAATAATGTGACGGCCTTGTTCCTCTTCGGAGACTC 155
Query 178 TTTCTTGGATGCAGGAAACAATAATTACATTAACACCACTACACTTGACCAAGCCAATTT 237
||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||
Sbjct 156 TTTCTTGGATGCAGGAAACAATAATTATATAAATACCACAACACTTGACCAAGCCAATTT 215
Query 238 TCCACCTTATGGTCAAACATTCTTTGGCCTCCCCACCGGAAGATTCTCCGACGGTCGTCT 297
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 TCCACCTTACGGTCAAACATTCTTTGGCCTCCCCACCGGAAGATTCTCCGACGGTCGTCT 275
Query 298 CATCTCTGATTTCATTGCGGAATATGCGAATTTGCCGTTAATTCCGCCGTTTTTGGAACC 357
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 CATCTCCGATTTCATTGCGGAATATGCGAATTTGCCGTTAATTCCGCCGTTTTTGGAACC 335
Query 358 GGGAAATAGTCAAAAGAAGCTTTACGGCGTCAACTTTGCGTCTGCTGGTGCTGGTGCTCT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 GGGAAATAGTCAAAAGAAGCTTTACGGCGTCAACTTTGCGTCTGCTGGTGCTGGTGCTCT 395
Query 418 TGTGGAAACGTTCCAAGGTTCGGTTATAAATTTGAGAACACAATTGGATCACTACAAGAA 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 396 TGTGGAAACGTTCCAAGGTTCGGTTATAAATTTGAGAACACAATTGGATCACTACAAGGA 455
Query 478 AGTGGAGAGATTATGGAGGACAAACTTTGGTAAAGAAGAAAGCAAGAAGAGAATCTCAAG 537
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 456 AGTGGAGAGATTGTGGAGGACAAAATTTGGTAAAGAAGAAAGCAAGAAGAGAATCTCAAG 515
Query 538 AGCTGTCTATTTGATAAGCATTGGGAGCAATGACTACTCAAGCATTTTCTTGACCAATCA 597
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 516 AGCTGTCTATTTGATAAGCATTGGGAGCAATGACTACTCAAGCCTTTTCTTGACCAATCA 575
Query 598 ATCTCTTCCCATTTCAATGTCTCAACATGTTGACATTGTCATTGGTAATCTGACTACATT 657
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 576 ATCTCTTCCCATTTCAATGTCTCAACATGTTGACATTGTCATTGGTAATATGACTACATT 635
Query 658 CATTCATGAAATATACAAGATTGGAGGACGTAAATTCGGGTTCTTGAATGTGCCTGACTT 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 636 CATTCATGAAATATACAAGATTGGAGGACGTAAATTCGGGTTCTTGAATGTGCCGGATTT 695
Query 718 GGGTTGTTTTCCGGCTTTACGAATTCTACAACCGAAGAATGATGATTCTTGCTTAAGAGA 777
|||||||||||| ||||||||||| ||||||||||| |||||| | |||||||||||||
Sbjct 696 GGGTTGTTTTCCAGCTTTACGAATACTACAACCGAATAATGAT--T-CTTGCTTAAGAGA 752
Query 778 TGCTTCAAGATTAGCAAGCATGCATAACAGAGCTCTGACAAATCTCTTGTTTCAAATGCA 837
||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||
Sbjct 753 TGCTTCAAGATTAGCAAACATGCATAACAGAGCTCTGGCAAATCTCTTGTTTAAAATGCA 812
Query 838 AAGACAAGTCAAGGGATTCAAATTCTCCCTATTTGACATGAACAAAAGCCTTAGACTCAG 897
||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 813 AAGACAAGTCAAGGGCTTCAAGTTCTCCCTCTTTGACATGAACAAAAGCCTTAGACTAAG 872
Query 898 AATGCAACATCCTTCTAAATTTGGGTTTAAAGAAGGGGAAGAAGCTTGTTGTGGAACTGG 957
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 873 AATGCAACATCCTTCTAAATTTGGGTTTAAAGAAGGGGAAGAAGCATGTTGTGGGACAGG 932
Query 958 GAAGTGGAGAGGAGTATTCAGCTGTGGAGGGAAGAGAATTGTGAAAGAATATCAA-TTGT 1016
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 933 GAAGTGGAGAGGAGTATTCAGCTGTGGAGGGAAGAGAATTGTGAAAGAATAT-AAGTTGT 991
Query 1017 GTGAGAATCCTAAAGATTATATTTTTTGGGATTCACTTCATCTCACACAAAATACATATA 1076
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |
Sbjct 992 GTGAGAATCCTAAAGATTATATCTTTTGGGATTCACTTCATCTCACACAGAATACTTACA 1051
Query 1077 ACCAATTCGCAAACTTAATTTGGAACGGTGGACACATGTCAGATTCTCTAGTGGTTGGTC 1136
||||||| ||||| ||||||||||| ||||| |||| ||||||||||||||||||||| |
Sbjct 1052 ACCAATTTGCAAATTTAATTTGGAATGGTGGGCACAAGTCAGATTCTCTAGTGGTTGGCC 1111
Query 1137 CATACAATATCAATAATTTATTTCAGATTCCTTGA 1171
|||||||||||||||| ||||||||||| ||||||
Sbjct 1112 CATACAATATCAATAAGTTATTTCAGATCCCTTGA 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43688862882
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5