BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53930.1
Length=477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914583 jgi|Araly1|914583|Al_scaffold_0001_4837 545 8e-155
> Ahg914583 jgi|Araly1|914583|Al_scaffold_0001_4837
Length=483
Score = 545 bits (295), Expect = 8e-155
Identities = 414/471 (88%), Gaps = 9/471 (2%)
Strand=Plus/Plus
Query 1 ATGGATGGGAAAACAAGGATCAACCTAGAGGTTGATAGCTCCAAAACCGTCAACCTCAAA 60
|||||||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||
Sbjct 1 ATGGATGGGAAAACAACGATCAACCTAGAGGTCGATAGCTCCAAAACCATCGACCTCAAA 60
Query 61 ATCGACGAAGACCCGACGATCAGTCAAAATATTCCACCGGACATTCTTCATGGTAAAGTC 120
||||||||||||||||||| | ||| ||||||||||| |||||||| |||| ||||||||
Sbjct 61 ATCGACGAAGACCCGACGAGCTGTCGAAATATTCCACAGGACATTCGTCATAGTAAAGTC 120
Query 121 ATGCATCTTTCTATAAATACTGT-GGACAAAAACACAATGATCAACCTAGAGGTCGATAG 179
||||| ||| |||||| || || || ||| | ||||||||||||||||||||||||||
Sbjct 121 ATGCAGATTTTTATAAAGACAGTGGGTGAAATA-ACAATGATCAACCTAGAGGTCGATAG 179
Query 180 CTCCAAAACCATCGACCTCAATATCGGCGAAAATCCAA-CCGGTGGATATAATGGGCCGG 238
|| ||||| ||||||||||| |||| ||||| |||| || || | ||||||||||||
Sbjct 180 CTACAAAATTATCGACCTCAAGATCGATGAAAACCCAATCC-GTCCAAATAATGGGCCGG 238
Query 239 ACTTTCGTCA---TGAAGTCATGTTTATTTTTATTAAGACTTTGACAGGAAGGAGAATCG 295
|||||||||| ||||| |||| ||||||||||||| |||||||| |||||||||||||
Sbjct 239 ACTTTCGTCATGGTGAAGGCATGCTTATTTTTATTAAAACTTTGACGGGAAGGAGAATCG 298
Query 296 TCTTAGAGGTGGAGAACTGCGACACTATTGAAAACATCAAGGCCAAAATTCAAGATAAAC 355
||||||||||||| ||| |||| | ||||||||| |||||||||| || |||||||||
Sbjct 299 TCTTAGAGGTGGAAAACCGCGATTCCATTGAAAACGTCAAGGCCAAGATCCAAGATAAAG 358
Query 356 AAGGCATCCCGGTGGACCA-ACAGAGGCTGATTTTTAAAGGCAAGCAACTCGAAGATGGT 414
||||||||||||||| || ||||||||||| |||||| ||||||||||||||||||||
Sbjct 359 AAGGCATCCCGGTGG-GCAGGCAGAGGCTGATGTTTAAAAGCAAGCAACTCGAAGATGGT 417
Query 415 CTCACTTTAGCTGACTACAACATCCAGAACGACTCGATCCTTCACTTGATA 465
||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 418 CTCACCGTAGCCGACTACAACATCCAGAACGACTCGATCCTTCACTTGATA 468
Score = 93.5 bits (50), Expect = 1e-18
Identities = 107/133 (80%), Gaps = 9/133 (7%)
Strand=Plus/Plus
Query 150 AAACACAATGATCAACCTAGAGGTCGATAGCTCCAAAACCATCGACCTCAATATCGGCGA 209
||| |||| |||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 10 AAA-ACAACGATCAACCTAGAGGTCGATAGCTCCAAAACCATCGACCTCAAAATCGACGA 68
Query 210 AAATCCAACCG-G-TG--GATATAATGGGCCGGACTTTCGTCAT-G-AA-GTCATGTTTA 262
| | || || | | || || ||| | | |||| |||||||| | || |||||| |
Sbjct 69 AGACCCGAC-GAGCTGTCGAAATATTCCACAGGACATTCGTCATAGTAAAGTCATGCAGA 127
Query 263 TTTTTATTAAGAC 275
||||||| |||||
Sbjct 128 TTTTTATAAAGAC 140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17284481817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5