BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G53935.1

Length=760
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924084 jgi|Araly1|924084|scaffold_105365.1                        183    1e-45
  Ahg914585 jgi|Araly1|914585|Al_scaffold_0001_4839                    145    6e-34


> Ahg924084 jgi|Araly1|924084|scaffold_105365.1
Length=341

 Score =  183 bits (99),  Expect = 1e-45
 Identities = 159/186 (85%), Gaps = 11/186 (6%)
 Strand=Plus/Plus

Query  555  CCTTTTGTCAAGAGTTCGTTTCTTTTGTTAAGGCTGAGAATCCGAATTGTTTTGGTATTG  614
            ||||| ||||||||| ||| | ||| ||||||||||||||||||| |||||| || ||||
Sbjct  73   CCTTTGGTCAAGAGTACGTCTGTTTCGTTAAGGCTGAGAATCCGACTTGTTTGGGGATTG  132

Query  615  ATGAAGCCA-AGTGGATTGCAAGCTGGG---GGAAGGTCAAAGATGGACCAAAGAAGCGA  670
            |||||| || |||| |||||||||||||     |||||||||||||||||||||||||||
Sbjct  133  ATGAAG-CAGAGTGCATTGCAAGCTGGGAATATAAGGTCAAAGATGGACCAAAGAAGCGA  191

Query  671  GAGATGGAAAACACA-TTGACGAAGA-TG-ATGGCTAAGCAAGCGGAGCTTTGTATGATG  727
            ||||||||||| | | |||| ||| | || | ||||  |||||||||||| |||||||||
Sbjct  192  GAGATGGAAAAAA-AGTTGAAGAA-ACTGCA-GGCTGTGCAAGCGGAGCTCTGTATGATG  248

Query  728  AGGATT  733
            ||||||
Sbjct  249  AGGATT  254


> Ahg914585 jgi|Araly1|914585|Al_scaffold_0001_4839
Length=465

 Score =  145 bits (78),  Expect = 6e-34
 Identities = 104/116 (90%), Gaps = 4/116 (3%)
 Strand=Plus/Plus

Query  630  TTGCAAGCTGGGGGAAGGTCAAAGATGGACCAAAGAAGCGAGAGATGGAAA-ACACATTG  688
            ||||||||||||  |||||||||||||||||||||||||||||| |||||| | || |||
Sbjct  83   TTGCAAGCTGGGATAAGGTCAAAGATGGACCAAAGAAGCGAGAGTTGGAAATA-ACGTTG  141

Query  689  ACGAAGATG-ATGGCTAAGCAAGCGGAGCTTTGTATGATGAGGATTTTATTTGTGG  743
            | ||||||| | ||||||||||||||||||||||||||| ||||||  ||||||||
Sbjct  142  AAGAAGATGGA-GGCTAAGCAAGCGGAGCTTTGTATGATAAGGATTGAATTTGTGG  196



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28020343995


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5