BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53940.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337558 jgi|Araly1|337558|fgenesh1_pg.C_scaffold_1004123 1681 0.0
Ahg493878 jgi|Araly1|493878|fgenesh2_kg.7__3311__AT5G40990.1 1037 0.0
> Ahg337558 jgi|Araly1|337558|fgenesh1_pg.C_scaffold_1004123
Length=1131
Score = 1681 bits (910), Expect = 0.0
Identities = 1030/1089 (95%), Gaps = 4/1089 (0%)
Strand=Plus/Plus
Query 1 ATGGAAAACTCTCGATCAACTTTGATCATCTTCTTTGCTTACACAACAATCATATTAATC 60
|||||||||||||||||||| | ||||||||||||||||||||||||||| |||| |||
Sbjct 1 ATGGAAAACTCTCGATCAACGTCAATCATCTTCTTTGCTTACACAACAATCGTATTGATC 60
Query 61 GGTTCTATCAACTGTAGAGACAACAACAACAACAATCTGGTAACAAACCAATCCGCTTTG 120
| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATTCCATCAACTGCAGAGACAACAACAACAACAATCTGGTAACAAACCAATCCGCTTTG 120
Query 121 TTCGTGTTTGGCGATTCTGTGTTCGATGCCGGAAACAACAATTACATCGATACTCTTCCC 180
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 121 TTCGTGTTTGGAGATTCTGTGTTCGATGCTGGAAACAACAACTACATCGATACTCTTCCC 180
Query 181 AGTTTCCGGTCTAATTACTGGCCATACGGCCAAACCACTTTCAAATTCCCTACTGGAAGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTTTCCGGTCTAATTACTGGCCATACGGCCAAACCACTTTCAAATTCCCTACTGGAAGA 240
Query 241 GTCTCCGACGGTCGTACAATTCCTGATTTTATTGCGGAGTACGCATGGTTACCGTTGATC 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTCTCCGACGGACGTACAATTCCTGATTTTATTGCGGAGTACGCATGGTTACCGTTGATC 300
Query 301 CCAGCGTATCTACAACCAAGTAACGGTAAAAATCAATTTCCCTACGGAGTTAGTTTTGCT 360
||| | ||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||
Sbjct 301 CCACCATATCTACAACCAAGTAACGGTCAAAATCAGTTTACCTATGGAGTTAGTTTTGCT 360
Query 361 TCCGCCGGTGCCGGAGCTTTAGTCGGAACCTTTCCCGGAATGGTGATAAATTTGAAATCA 420
|||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||
Sbjct 361 TCCGCCGGTGCCGGAGCTTTAGCCGGCACCTTTCCCGGAATGGTGATAGATTTGAAAACA 420
Query 421 CAATTAAACAATTTTAAGAAGGTTGAAAAATTGTTGAGATCTACGTTAGGAGAAGCACAA 480
|||||| |||| ||||| ||||||||| |||||||||||| || ||||||||||||||||
Sbjct 421 CAATTAGACAACTTTAAAAAGGTTGAAGAATTGTTGAGATTTAAGTTAGGAGAAGCACAA 480
Query 481 GGGAAGATGGTTATTTCAAGAGCAGTTTATCTGTTTCATATCGGAGTCAACGATTATCAA 540
||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGGAAGAGGGTTATTGCAACAGCAGTTTATCTGTTTCATATCGGAGTCAACGATTATCAA 540
Query 541 TATCCATTCTCTACAAACTCTTCCATTTTCCAATCCAGTCCTCAAGAGATATACGTCGAT 600
|||||||||||||||||||||||| |||||||||||| ||||| |||||||||||| |||
Sbjct 541 TATCCATTCTCTACAAACTCTTCCGTTTTCCAATCCAATCCTCGAGAGATATACGTTGAT 600
Query 601 TTTGTTGTCGGTAACACAACGGCCGTGATCAAGGAAGTGTATAAAATTGGAGGAAGGAAG 660
||||||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 601 TTTGTTGTCAGTAACACGACAGCCGTGATCAAGGAAGTGTATAGAATTGGAGGAAGGAAG 660
Query 661 TTTGGATTCTTGAACATGGGAGCGTATGATTGTGCACCGGCCTCATTGATTATAGACCAA 720
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 TTTGGATTCTTGAACATGGGAGCGTATGATTGTGCACCAGCCTCATTGATTATAGACCAA 720
Query 721 ACAAAGATAGGAACTTGTTTTAAGCCGGTCACCGAGCTGATCAATCTGCACAACGAGAAG 780
||||| |||||| |||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 721 ACAAAAATAGGATCTTGTTTTAAGCCGGTCACCGAGCTGATCAGTCTGCACAACGATAAG 780
Query 781 CTT-GAGAGTGGTTTGAGGCGGCTAGAGCGTGAACTATCGGGATTCAAATACGCTCTTCA 839
||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTTCGGGA-TGGTTTGAGGCGGCTAGAGCGTGAACTATCGGGATTCAAATACGCTCTTCA 839
Query 840 TGACTATCACACTTCCCTATCCGTACGAATGAACAATCCTTCCAAATACGGGTTTAAGGA 899
|||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||
Sbjct 840 TGACTATCACACTTCCTTATCCGAACGAATGAACAATCCTTCGAAATACGGGTTTAAGGA 899
Query 900 AGGGAA-AATGGCATGTTGTGGAACCGGACCATTGCGGGGAATCAATACATGCGGAGGCC 958
||||| || ||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 900 GGGGAAGAA-GGCATGTTGTGGAACCGGACCATTGAGGGGAATCAATACATGTGGAGGCC 958
Query 959 GAATGGGAGTATCTCAAAGTTACGAGTTATGCGAAAAAGTTACAGATTACTTGTTCTTTG 1018
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 959 GAATGGGAGTATCTCAAAGTTACGAGTTATGCGAAAACGTTACAGATTACTTGTTCTTTG 1018
Query 1019 ATCATTTTCATTTGACTGAGAAAGCACATCAACAAATTGCAGAGCTGATTTGGAGCGGGC 1078
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATCCTTTTCATTTGACTGAGAAAGCACATCAACAAATTGCAGAGCTGATTTGGAGCGGAT 1078
Query 1079 CGACCAACG 1087
|||||||||
Sbjct 1079 CGACCAACG 1087
Score = 145 bits (78), Expect = 1e-33
Identities = 182/229 (79%), Gaps = 19/229 (8%)
Strand=Plus/Plus
Query 1087 GGTTTAAGGAAGGGAATAAGACATGTTTGTGGGACTGGACCATTGAGGGGAATCAATACA 1146
|||||||||| ||||| ||| |||| |||||| || ||||||||||||||||||||||||
Sbjct 890 GGTTTAAGGAGGGGAAGAAGGCATG-TTGTGGAACCGGACCATTGAGGGGAATCAATACA 948
Query 1147 TGTGGAGGCCGAGTTTCGGCACAAG-TACAAGGCTACGAGTTATGTGAAAACGTTGCGGA 1205
|||||||||||| | || | | | ||| | ||||||||||| ||||||||| | ||
Sbjct 949 TGTGGAGGCCGAATG--GG-AGTATCT-CAAAGTTACGAGTTATGCGAAAACGTTACAGA 1004
Query 1206 TTACTTGTT-TTTGAATTCATTTCATTTGA-TAGAGAAGGCTCATCGGCAGACGACAGAT 1263
||||||||| ||||| | | |||||||||| | ||||| || |||| | || | | ||
Sbjct 1005 TTACTTGTTCTTTGA-TCCTTTTCATTTGACT-GAGAAAGCACATC---A-AC-A-A-AT 1055
Query 1264 CGCAGGGATTATTTAGAGCGGA-CAGGCCAATGTTACCGGACCTTATAA 1311
|||| | | |||| ||||||| | | |||| || |||| |||||||||
Sbjct 1056 TGCAGAGCTGATTTGGAGCGGATC-GACCAACGTCACCGAACCTTATAA 1103
> Ahg493878 jgi|Araly1|493878|fgenesh2_kg.7__3311__AT5G40990.1
Length=1107
Score = 1037 bits (561), Expect = 0.0
Identities = 925/1096 (84%), Gaps = 44/1096 (4%)
Strand=Plus/Plus
Query 1 ATGGAAAACTCTCGATCAACTTT-GATCATC-TTCTTTGCTTACACAACAATCATATTAA 58
||||||||||||| || | ||| ||||| | ||||| |||||||||| |||||||| |
Sbjct 1 ATGGAAAACTCTCAAT-TAGTTTCGATCA-CTTTCTTAGCTTACACAATAATCATATCAG 58
Query 59 TCGGTTCTATCAACTGTAGAGACAACAACAACAACAATCTGGTAACAAACCAATCCGCTT 118
|||| || |||||||| | || |||||||||||||||||||||||||||||||||
Sbjct 59 TCGGCTCCATCAACTGCATAG------ACAACAACAATCTGGTAACAAACCAATCCGCTT 112
Query 119 TGTTCGTGTTTGGCGATTCTGTGTTCGATGCCGGAAACAACAATTACATCGATACTCTTC 178
||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||| |||
Sbjct 113 TGTTCGTGTTTGGAGATTCTGTGTTCGATGCTGGAAACAACAACTACATCGATACT-TTC 171
Query 179 CC-AGTTTCCGGTCTAATTACTGGCCATACGGCCAAACCACTTTCAAATTCCCTACTGGA 237
| ||| ||||||||||||||||||| || || ||||| || ||||||| ||||||||||
Sbjct 172 TCTAGTGTCCGGTCTAATTACTGGCCGTATGGTCAAACAACATTCAAATCCCCTACTGGA 231
Query 238 AGAGTCTCCGACGGTCGTACAATTCCTGATTTTATTGCGGAGTACGCATGGTTACCGTTG 297
|||||||||||||| ||| ||||||||||| || |||||||||||||||||||| |||
Sbjct 232 AGAGTCTCCGACGGACGTTTGATTCCTGATTTCATCGCGGAGTACGCATGGTTACCATTG 291
Query 298 ATCCCAGCGTATCTACAACCAAGTA-ACGGTAAAAATCAATTTCCCTACGGAGTTAGTTT 356
|||||| | || |||||||| | ||||||| | |||||| |||| || || | |||
Sbjct 292 ATCCCACCAAATTTACAACCAC-TCCACGGTAACAGCCAATTTACCTATGGGGTAAATTT 350
Query 357 TGCTTCCGCCGGTGCCGGAGCTTTAGTCGGAACCTTTCCCGGAATGGTGATAAATTTGA- 415
|||||| | || ||||||||||| |||||||||||| ||||| |||||||||||||||
Sbjct 351 TGCTTCAGGTGGCGCCGGAGCTTTGGTCGGAACCTTTTCCGGATTGGTGATAAATTTGAG 410
Query 416 AATCACAATTAAACAATTTTAAGAAGGTTGAAAAATTGTTGAGATCTACGTTAGGAGAAG 475
|| ||||||||||||| || ||||||||||||||| ||||||| |||| ||||||||| |
Sbjct 411 AA-CACAATTAAACAACTTCAAGAAGGTTGAAAAAATGTTGAGGTCTAAGTTAGGAGATG 469
Query 476 CACAAGGGAAGATGGTTATTTCAAGAGCAGTTTATCTGTTTCATATCGGAGTCAACGATT 535
| ||||||| |||||| |||||||| |||||| |||||||||| ||| |||||||||
Sbjct 470 TTGAGGGGAAGAGGGTTATCTCAAGAGCTGTTTATTTGTTTCATATTGGACTCAACGATT 529
Query 536 ATCAATATCCATTCTCTACAAACTCTTCCATTTTCCAATCCAGTCCTCAA-GAGATATAC 594
|||||||||| ||| ||||||||||||||||||| ||||||| | | ||| |||| ||||
Sbjct 530 ATCAATATCCGTTCACTACAAACTCTTCCATTTTTCAATCCATTTC-CAACGAGAAATAC 588
Query 595 GTCGATTTTGTTGTCGGTAACACAACGGCCGTGATCAAGGAAGTGTATAAAATTGGAGGA 654
||||||| |||||| ||||||| ||| || | | || | | || || | |
Sbjct 589 GTCGATTATGTTGTTGGTAACA---------TGA-CA-G-ACGTTT-TCAA---GG-G-A 630
Query 655 AGGAAGTTTGGATTCTTGAACATGGGAGCGTATGATTGTGCACCGGCCTCATTGATTATA 714
|||||||||||||||||||||| ||| | || ||||||||||| ||||||||| |||||
Sbjct 631 AGGAAGTTTGGATTCTTGAACACAGGACCATACGATTGTGCACCAGCCTCATTGGTTATA 690
Query 715 GACCAAACAAAGATAGGAACTTGTTTTAAGCCGGTCACCGAGCTGATCAATCTGCACAAC 774
|||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||
Sbjct 691 GACCAAACAAAGATAGGATCTTGTTTTCAGCCGGTCACTAAGCTGATCAATCTGCACAAC 750
Query 775 GAGAAGCT--TGAGAGTGGTTTGAGGCGGCTAGAGCGTGAACTATCGGGATTCAAATACG 832
||||||| ||| | |||||||||||||||| | | ||||||||| ||||||||||||
Sbjct 751 AAGAAGCTCCTGA-A-TGGTTTGAGGCGGCTAAATCATGAACTATCCGGATTCAAATACT 808
Query 833 CTCTTCATGACTATCACACTTCCCTATCCGTACGAATGAACAATCCTTCCAAATACGGGT 892
| || || ||||||||||||||||| || | | ||||||| |||||||| ||||||||||
Sbjct 809 CCCTCCACGACTATCACACTTCCCTCTCGGAAAGAATGAATAATCCTTCAAAATACGGGT 868
Query 893 TTAAGGAAGGGAA-AATGGCATGTTGTGGAACCGGACCATTGCGGGGAATCAATACATGC 951
| ||||| ||||| || |||||||||||||| |||||||||| | ||||||||||| ||
Sbjct 869 TCAAGGAGGGGAAGAA-GGCATGTTGTGGAAGCGGACCATTGAGAGGAATCAATACGTGT 927
Query 952 GGAGGCCGAATGGGAGTATCTCAAAGTTACGAGTTATGCGAAAAAGTTACAGATTACTTG 1011
||||||||||||||| | || |||| |||||||||||| ||||| |||||||| || |||
Sbjct 928 GGAGGCCGAATGGGACTGTCACAAAATTACGAGTTATGTGAAAACGTTACAGACTATTTG 987
Query 1012 TTCTTTGATCATTTTCATTTGACTGAGAAAGC-ACATCAACAAATTGCAGAGCTGATTTG 1070
|||| ||||| |||||||||||| || ||||| | |||| || || || |||||||||||
Sbjct 988 TTCTATGATCCTTTTCATTTGACGGAAAAAGCTA-ATCAGCAGATCGCTGAGCTGATTTG 1046
Query 1071 GAGCGGGCCGACCAAC 1086
|||||| |||||||||
Sbjct 1047 GAGCGGACCGACCAAC 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5