BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53980.1
Length=276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314706 jgi|Araly1|314706|fgenesh1_pm.C_scaffold_1003486 156 9e-38
> Ahg314706 jgi|Araly1|314706|fgenesh1_pm.C_scaffold_1003486
Length=348
Score = 156 bits (84), Expect = 9e-38
Identities = 122/139 (88%), Gaps = 8/139 (6%)
Strand=Plus/Plus
Query 136 GGTGAAATGATGAGT-ATTTTTGTATCAACGCTTAAGGGGAAAACATTCAACCTAGAGGT 194
|||||| | |||| | ||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 109 GGTGAAGTCATGA-TGATTTTTGTATCAACGCTTAAGGGGAAAACATTCGACCTTGAGGT 167
Query 195 GAAGGGATCTGAGATC-ATTCAACAAGTCAAGAACATGATCCATGACCA-GGTC--CCAC 250
||||||||| |||| | ||| ||||||||||||||||||||||||| || ||| ||||
Sbjct 168 GAAGGGATCCGAGA-CGATTAAACAAGTCAAGAACATGATCCATGATCACGGTGGGCCAC 226
Query 251 CAGTGAAGAAGCAAGAGGC 269
||||||| ||||| |||||
Sbjct 227 CAGTGAACAAGCA-GAGGC 244
Score = 154 bits (83), Expect = 3e-37
Identities = 103/112 (92%), Gaps = 3/112 (3%)
Strand=Plus/Plus
Query 1 ATGAAGATTCTTATCAAGACAG-AGAAGGGAAAGACCATAAACCTAGAGCTTGAGGATAG 59
|||||||||||||||||||| | | |||||||||| |||||||||||| ||||||||||
Sbjct 1 ATGAAGATTCTTATCAAGACGGTA-AAGGGAAAGATAATAAACCTAGAGGTTGAGGATAG 59
Query 60 CTCCGAGACAATCGACATCAAGATCCATGCAGAG-CCGACCCGTCAACTGGT 110
|||||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct 60 CTCCGAGACAATCGACATCAAGATCCGTGGAGAGTCCGACCCGTCAACTGGT 111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9615208428
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5