BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53990.1 Length=1104 Score E Sequences producing significant alignments: (Bits) Value Ahg337560 jgi|Araly1|337560|fgenesh1_pg.C_scaffold_1004125 1437 0.0 Ahg493878 jgi|Araly1|493878|fgenesh2_kg.7__3311__AT5G40990.1 704 0.0 > Ahg337560 jgi|Araly1|337560|fgenesh1_pg.C_scaffold_1004125 Length=1131 Score = 1437 bits (778), Expect = 0.0 Identities = 1009/1117 (90%), Gaps = 29/1117 (3%) Strand=Plus/Plus Query 6 TCGATTAGTTTTGATCATCTTCTTCGTCTACACAATAATCTTGTCGATCGGCTCAATCAA 65 ||||||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||| Sbjct 12 TCGATTAGTTTCGATCATCTTCTTCGTCTATACAGTAATCTTATCGATCGGCTCAATCAA 71 Query 66 CTGCATAGACAATAATAATCTGGTAACAAATCAAGCTGCTTTGTTCGTGTTCGGAGATTC 125 ||||| | |||| || ||||| |||||||| |||||||| |||||||||||||||||||| Sbjct 72 CTGCAAAAACAAGAACAATCTTGTAACAAACCAAGCTGCGTTGTTCGTGTTCGGAGATTC 131 Query 126 TCTTTTTGATGCCGGAAACAACAACTACATCAATACTGTCTCAAGTTTCCGGTCTAATAT 185 ||| || |||||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 132 TCTGTTCGATGCCGGAAACAACAACTACATCGATACCGTCTCAAGTTTCCGGTCTAATAT 191 Query 186 CTGGCCGTACGGTCAAACCAATTTC-AAGTTTCCCACCGGAAGA-T-T-A-TC---CGA- 236 ||||||||||||| ||||| |||| ||| |||||||||||||| | | | | ||| Sbjct 192 ATGGCCGTACGGTCGAACCACTTTCAAAG-TTCCCACCGGAAGACTCTCAGACGGACGAT 250 Query 237 TG------GA---C--C-C-GAAAAGGCATGGTTGCCGTCGATCCCGCCAAATCTACAAC 283 || || | | | || || |||||||| |||| |||||||||||||||||||| Sbjct 251 TGATTCCTGATTTCATCGCGGAGAACGCATGGTTACCGTTGATCCCGCCAAATCTACAAC 310 Query 284 CAAACAACGGTAACAATCAATTTACCTATGGAGTAAGTTTTGCTTCTGCTGGCGCCGGAG 343 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 311 CAAGCAACGGTAACAATCAATTTACCTATGGAGTAAGTTTTGCTTCTGCTGGCGCCGGAG 370 Query 344 CTTTAGCCGAATCCTTTCTTGGAATGGTGATAAATTTGGGAACACAGTTAAACAACTTCA 403 |||||| |||| ||||| |||||||| |||||||||||||||||| |||||||||||| Sbjct 371 CTTTAGTCGAAAGCTTTCCTGGAATGGCAATAAATTTGGGAACACAGCTAAACAACTTCA 430 Query 404 AAGATGTTGAAAAGAGCTTGAGATCTGAACTAGGAGATGCAGAAACCAAAAGGGTTTTCT 463 | |||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||| Sbjct 431 AGGATGTTGAAAAGAGGTTGAGATCTGAATTAGGAGATGCAGATACCAAAAGGGTTTTCT 490 Query 464 CAAGAGCTGTTTATCTGTTTCATATCGGGGCCAACGACTATTTTTATCCTTTCTCTGCAA 523 |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 491 CAAGAGCTGTTTATCTGTTTCATATCGGAGTTAACGACTATTTTTATCCTTTCTCTGCAA 550 Query 524 ACTCCTCAACTTTCAAATCCAACTCCAAAGAGAAATTCGTCGATTTTGTTATCGGTAACA 583 |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 551 ACTCCTCAACTTTCCAATCCAATTCCAAAGAGAAATTCGTCGATTTTGTTATCGGTAACA 610 Query 584 TTACATTCGTTATCGAGGA-AGTGTATAAAATGGGAGGAAG-AAAGTTTGGATTTTTGAA 641 |||| ||| ||| || | | | ||||||||||||||||| ||| |||||||||||||| Sbjct 611 CGACATCCGTGATCAAG-ACACTTTATAAAATGGGAGGAAGGAAA-TTTGGATTTTTGAA 668 Query 642 CGTGGGACCGTACGAATGTTCACCAAATTCATTGATAAGAGACCGAACAAAGATAGGATC 701 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 669 CGTGGGACCGTACGAATGTGCACCAAGTTCATTGATAAGAGACCGAACAAAGATAGGATC 728 Query 702 TTGTTTCAAACCTGTCGCTGAGCTTATCGACATGCACAACAAGAAGTTTCCCGATGTTTT 761 |||||||||||||||| |||||||||| || |||||||||||||||||||| ||||| || Sbjct 729 TTGTTTCAAACCTGTCACTGAGCTTATAGATATGCACAACAAGAAGTTTCCGGATGTCTT 788 Query 762 AAGGCGGCTACAACGCCAATTATCGGGTTTTAGATACGCCCTTCATGACTATCACACTTC 821 ||||||||||||||| ||||||| || ||||||||||| ||||| ||||||||| |||| Sbjct 789 AAGGCGGCTACAACGTGAATTATCCGGATTTAGATACGCTCTTCACGACTATCACTCTTC 848 Query 822 TCTTTCCGAAAGAATCAACAGTCCTTCAAAATATGGGTTCAAGGAAGGGAAGAAGGCATG 881 ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||| Sbjct 849 ACTTTCCGAAAGAATCAATAATCCTTCAAAATATGGGTTCAAAGAAGGGAAGAAGGCATG 908 Query 882 TTGTGGAAGCGGACCACTGAGAGGAATCAATACGTGTGGAAACAGAATAGGACCGTCGCA 941 ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| Sbjct 909 TTGTGGAAGCGGACCACTGAGAGGAATCAATACGTGTGGAAACCGAATAGGGCCATCGCA 968 Query 942 AGGTTACG-GCCTATGCGAAAACGTTACCGATTATTTGTTCTATGATTCCTCTCATTTGA 1000 |||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 969 AGGTTACGAGC-TATGCGAAAACGTTACCGATTATTTGTTCTTTGATTCCTCTCATTTGA 1027 Query 1001 CGGAAAAGGCTCATCGACAAATCGCAGAGCTGATTTGGAACGGGCCGCCTAATGTCACTA 1060 ||||||||||||||||||| |||||||||||||||||| ||| | || ||||||||| Sbjct 1028 CGGAAAAGGCTCATCGACAGATCGCAGAGCTGATTTGGGGCGGATCACCCAATGTCACTG 1087 Query 1061 GACCTTATAATCTCAAAGCTTTATTTGAACTTAGGCT 1097 ||||||||||||||||||| ||||||||| ||||||| Sbjct 1088 GACCTTATAATCTCAAAGCCTTATTTGAATTTAGGCT 1124 > Ahg493878 jgi|Araly1|493878|fgenesh2_kg.7__3311__AT5G40990.1 Length=1107 Score = 704 bits (381), Expect = 0.0 Identities = 892/1127 (79%), Gaps = 81/1127 (7%) Strand=Plus/Plus Query 9 ATTAGTTTTGATCATC-TTCTTCGTC-TACACAATAATCTTGTCGA-TCGGCTCAATCAA 65 |||||||| ||||| | ||||| | | |||||||||||| | || | ||||||| ||||| Sbjct 15 ATTAGTTTCGATCA-CTTTCTTAG-CTTACACAATAATCATATC-AGTCGGCTCCATCAA 71 Query 66 CTGCATAGACAATAATAATCTGGTAACAAATCAAGCTGCTTTGTTCGTGTTCGGAGATTC 125 |||||||||||| || |||||||||||||| ||| | |||||||||||||| |||||||| Sbjct 72 CTGCATAGACAACAACAATCTGGTAACAAACCAATCCGCTTTGTTCGTGTTTGGAGATTC 131 Query 126 TCTTTTTGATGCCGGAAACAACAACTACATCAATACTGTCTCAAGTTTCCGGTCTAA-TA 184 | | || ||||| |||||||||||||||||| ||||| |||| ||| |||||||||| || Sbjct 132 TGTGTTCGATGCTGGAAACAACAACTACATCGATACTTTCTCTAGTGTCCGGTCTAATTA 191 Query 185 TCTGGCCGTACGGTCAAACCAA-TTTCAAGTTTCCC-ACCGGAAGATTATCCGATGGAC- 241 ||||||||| ||||||| ||| ||||| | ||| || |||||| | ||||| |||| Sbjct 192 -CTGGCCGTATGGTCAAA-CAACATTCAA-ATCCCCTACTGGAAGAGTCTCCGACGGACG 248 Query 242 -------CC-GA----A------A--AGGCATGGTTGCCGTCGATCCCGCCAAATCTACA 281 || || | | | |||||||| || | |||||| |||||| |||| Sbjct 249 TTTGATTCCTGATTTCATCGCGGAGTACGCATGGTTACCATTGATCCCACCAAATTTACA 308 Query 282 ACCAAACAACGGTAACAATCAATTTACCTATGGAGTAAGTTTTGCTTCTGCTGGCGCCGG 341 |||| | ||||||||| |||||||||||||| |||| ||||||||| | ||||||||| Sbjct 309 ACCACTCCACGGTAACAGCCAATTTACCTATGGGGTAAATTTTGCTTCAGGTGGCGCCGG 368 Query 342 AGCTTTAG-CCGAATCC-TTTCTTGGAATGGTGATAAATTTGGGAACACAGTTAAACAAC 399 |||||| | | ||| || |||| ||| |||||||||||||| ||||||| ||||||||| Sbjct 369 AGCTTTGGTCGGAA-CCTTTTC-CGGATTGGTGATAAATTTGAGAACACAATTAAACAAC 426 Query 400 TTCAAAG-ATGTTGAAAAGA-GCTTGAGATCTGAA-CTAGGAGATGCAGAAACCAAAAGG 456 ||| ||| | |||||||| | | ||||| ||| || ||||||||| || || ||| Sbjct 427 TTC-AAGAAGGTTGAAAAAATG-TTGAGGTCT-AAGTTAGGAGATGTTGAGGGGAAGAGG 483 Query 457 GTTTTCTCAAGAGCTGTTTATCTGTTTCATATCGGGGC-CAACGACTATTTTTATCCTTT 515 ||| ||||||||||||||||| |||||||||| || | |||||| ||| ||||| || Sbjct 484 GTTATCTCAAGAGCTGTTTATTTGTTTCATAT-TGGACTCAACGATTATCAATATCCGTT 542 Query 516 CTCTGCAAACTCCT-CAACTTTCAAATCCAACTCCAAAGAGAAATTCGTCGATTTTGTTA 574 | || ||||||| | || |||| |||||| ||||| ||||||| |||||||| |||| Sbjct 543 CACTACAAACTCTTCCATTTTTC-AATCCATTTCCAACGAGAAATACGTCGATTATGTTG 601 Query 575 TCGGTAACATTACATTCGTTATCGAGGAAGTGTATAAAATGGGAGGAAGAAAGTTTGGAT 634 | ||| | ||| | | | | | || || | | || | ||||| |||||||||| Sbjct 602 TTGGT---A--ACA-T-G--A-C-A-GACGT-T-TTCAA---G-GGAAGGAAGTTTGGAT 643 Query 635 TTTTGAACGTGGGACCGTACGAATGTTCACCAAATTCATTGATAAGAGACCGAACAAAGA 694 | |||||| ||||| ||||| ||| ||||| |||||| | | ||||| |||||||| Sbjct 644 TCTTGAACACAGGACCATACGATTGTGCACCAGCCTCATTGGTTATAGACCAAACAAAGA 703 Query 695 TAGGATCTTG-TTTCAAACCTGTCGCTGAGCTTATCGA-CATGCACAACAAGAAGTTTCC 752 |||||||||| |||| | || ||| || |||| ||| | | |||||||||||||| ||| Sbjct 704 TAGGATCTTGTTTTC-AGCCGGTCACTAAGCTGATCAATC-TGCACAACAAGAAG-CTCC 760 Query 753 CG-ATGTTTTAAGGCGGCTACAA-CGCCAATTATCGGGTTTTAGATACGCCCTTCATGAC 810 | ||| ||| ||||||||| || | || |||| || || | |||| |||| || ||| Sbjct 761 TGAATGGTTTGAGGCGGCTA-AATCATGAACTATCCGGATTCAAATACTCCCTCCACGAC 819 Query 811 TATCACACTTCTCTTTCCGAAAGAATCAACAGTCCTTCAAAATATGGGTTCAAGGAAGGG 870 ||||||||||| || || |||||||| || | |||||||||||| ||||||||||| ||| Sbjct 820 TATCACACTTCCCTCTCGGAAAGAATGAATAATCCTTCAAAATACGGGTTCAAGGAGGGG 879 Query 871 AAGAAGGCATGTTGTGGAAGCGGACCACTGAGAGGAATCAATACGTGTGGAAACAGAATA 930 ||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| Sbjct 880 AAGAAGGCATGTTGTGGAAGCGGACCATTGAGAGGAATCAATACGTGTGGAGGCCGAATG 939 Query 931 GGACCGTCGCAAGGTTACG-GCCTATGCGAAAACGTTACCGATTATTTGTTCTATGATTC 989 |||| ||| ||| ||||| | |||| ||||||||||| || ||||||||||||||| | Sbjct 940 GGACTGTCACAAAATTACGAGT-TATGTGAAAACGTTACAGACTATTTGTTCTATGAT-C 997 Query 990 CTCT-CATTTGACGGAAAAGGCTCATC-GACAAATCGCAGAGCTGATTTGGAACGGGCCG 1047 || | |||||||||||||| ||| ||| | || ||||| ||||||||||||| ||| ||| Sbjct 998 CTTTTCATTTGACGGAAAAAGCTAATCAG-CAGATCGCTGAGCTGATTTGGAGCGGACCG 1056 Query 1048 -CCTAATGTCACTAGACCTTATAATCTCAAAGCTTTATTTGAACTTA 1093 || || ||||| |||| |||||||||||||| | |||||||||| Sbjct 1057 ACC-AACATCACTGGACCCTATAATCTCAAAGCGCTGTTTGAACTTA 1102 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41134627443 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5