BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53990.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337560 jgi|Araly1|337560|fgenesh1_pg.C_scaffold_1004125 1437 0.0
Ahg493878 jgi|Araly1|493878|fgenesh2_kg.7__3311__AT5G40990.1 704 0.0
> Ahg337560 jgi|Araly1|337560|fgenesh1_pg.C_scaffold_1004125
Length=1131
Score = 1437 bits (778), Expect = 0.0
Identities = 1009/1117 (90%), Gaps = 29/1117 (3%)
Strand=Plus/Plus
Query 6 TCGATTAGTTTTGATCATCTTCTTCGTCTACACAATAATCTTGTCGATCGGCTCAATCAA 65
||||||||||| |||||||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct 12 TCGATTAGTTTCGATCATCTTCTTCGTCTATACAGTAATCTTATCGATCGGCTCAATCAA 71
Query 66 CTGCATAGACAATAATAATCTGGTAACAAATCAAGCTGCTTTGTTCGTGTTCGGAGATTC 125
||||| | |||| || ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 72 CTGCAAAAACAAGAACAATCTTGTAACAAACCAAGCTGCGTTGTTCGTGTTCGGAGATTC 131
Query 126 TCTTTTTGATGCCGGAAACAACAACTACATCAATACTGTCTCAAGTTTCCGGTCTAATAT 185
||| || |||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 132 TCTGTTCGATGCCGGAAACAACAACTACATCGATACCGTCTCAAGTTTCCGGTCTAATAT 191
Query 186 CTGGCCGTACGGTCAAACCAATTTC-AAGTTTCCCACCGGAAGA-T-T-A-TC---CGA- 236
||||||||||||| ||||| |||| ||| |||||||||||||| | | | | |||
Sbjct 192 ATGGCCGTACGGTCGAACCACTTTCAAAG-TTCCCACCGGAAGACTCTCAGACGGACGAT 250
Query 237 TG------GA---C--C-C-GAAAAGGCATGGTTGCCGTCGATCCCGCCAAATCTACAAC 283
|| || | | | || || |||||||| |||| ||||||||||||||||||||
Sbjct 251 TGATTCCTGATTTCATCGCGGAGAACGCATGGTTACCGTTGATCCCGCCAAATCTACAAC 310
Query 284 CAAACAACGGTAACAATCAATTTACCTATGGAGTAAGTTTTGCTTCTGCTGGCGCCGGAG 343
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 CAAGCAACGGTAACAATCAATTTACCTATGGAGTAAGTTTTGCTTCTGCTGGCGCCGGAG 370
Query 344 CTTTAGCCGAATCCTTTCTTGGAATGGTGATAAATTTGGGAACACAGTTAAACAACTTCA 403
|||||| |||| ||||| |||||||| |||||||||||||||||| ||||||||||||
Sbjct 371 CTTTAGTCGAAAGCTTTCCTGGAATGGCAATAAATTTGGGAACACAGCTAAACAACTTCA 430
Query 404 AAGATGTTGAAAAGAGCTTGAGATCTGAACTAGGAGATGCAGAAACCAAAAGGGTTTTCT 463
| |||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 431 AGGATGTTGAAAAGAGGTTGAGATCTGAATTAGGAGATGCAGATACCAAAAGGGTTTTCT 490
Query 464 CAAGAGCTGTTTATCTGTTTCATATCGGGGCCAACGACTATTTTTATCCTTTCTCTGCAA 523
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 491 CAAGAGCTGTTTATCTGTTTCATATCGGAGTTAACGACTATTTTTATCCTTTCTCTGCAA 550
Query 524 ACTCCTCAACTTTCAAATCCAACTCCAAAGAGAAATTCGTCGATTTTGTTATCGGTAACA 583
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 551 ACTCCTCAACTTTCCAATCCAATTCCAAAGAGAAATTCGTCGATTTTGTTATCGGTAACA 610
Query 584 TTACATTCGTTATCGAGGA-AGTGTATAAAATGGGAGGAAG-AAAGTTTGGATTTTTGAA 641
|||| ||| ||| || | | | ||||||||||||||||| ||| ||||||||||||||
Sbjct 611 CGACATCCGTGATCAAG-ACACTTTATAAAATGGGAGGAAGGAAA-TTTGGATTTTTGAA 668
Query 642 CGTGGGACCGTACGAATGTTCACCAAATTCATTGATAAGAGACCGAACAAAGATAGGATC 701
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 669 CGTGGGACCGTACGAATGTGCACCAAGTTCATTGATAAGAGACCGAACAAAGATAGGATC 728
Query 702 TTGTTTCAAACCTGTCGCTGAGCTTATCGACATGCACAACAAGAAGTTTCCCGATGTTTT 761
|||||||||||||||| |||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 729 TTGTTTCAAACCTGTCACTGAGCTTATAGATATGCACAACAAGAAGTTTCCGGATGTCTT 788
Query 762 AAGGCGGCTACAACGCCAATTATCGGGTTTTAGATACGCCCTTCATGACTATCACACTTC 821
||||||||||||||| ||||||| || ||||||||||| ||||| ||||||||| ||||
Sbjct 789 AAGGCGGCTACAACGTGAATTATCCGGATTTAGATACGCTCTTCACGACTATCACTCTTC 848
Query 822 TCTTTCCGAAAGAATCAACAGTCCTTCAAAATATGGGTTCAAGGAAGGGAAGAAGGCATG 881
||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 849 ACTTTCCGAAAGAATCAATAATCCTTCAAAATATGGGTTCAAAGAAGGGAAGAAGGCATG 908
Query 882 TTGTGGAAGCGGACCACTGAGAGGAATCAATACGTGTGGAAACAGAATAGGACCGTCGCA 941
||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct 909 TTGTGGAAGCGGACCACTGAGAGGAATCAATACGTGTGGAAACCGAATAGGGCCATCGCA 968
Query 942 AGGTTACG-GCCTATGCGAAAACGTTACCGATTATTTGTTCTATGATTCCTCTCATTTGA 1000
|||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 969 AGGTTACGAGC-TATGCGAAAACGTTACCGATTATTTGTTCTTTGATTCCTCTCATTTGA 1027
Query 1001 CGGAAAAGGCTCATCGACAAATCGCAGAGCTGATTTGGAACGGGCCGCCTAATGTCACTA 1060
||||||||||||||||||| |||||||||||||||||| ||| | || |||||||||
Sbjct 1028 CGGAAAAGGCTCATCGACAGATCGCAGAGCTGATTTGGGGCGGATCACCCAATGTCACTG 1087
Query 1061 GACCTTATAATCTCAAAGCTTTATTTGAACTTAGGCT 1097
||||||||||||||||||| ||||||||| |||||||
Sbjct 1088 GACCTTATAATCTCAAAGCCTTATTTGAATTTAGGCT 1124
> Ahg493878 jgi|Araly1|493878|fgenesh2_kg.7__3311__AT5G40990.1
Length=1107
Score = 704 bits (381), Expect = 0.0
Identities = 892/1127 (79%), Gaps = 81/1127 (7%)
Strand=Plus/Plus
Query 9 ATTAGTTTTGATCATC-TTCTTCGTC-TACACAATAATCTTGTCGA-TCGGCTCAATCAA 65
|||||||| ||||| | ||||| | | |||||||||||| | || | ||||||| |||||
Sbjct 15 ATTAGTTTCGATCA-CTTTCTTAG-CTTACACAATAATCATATC-AGTCGGCTCCATCAA 71
Query 66 CTGCATAGACAATAATAATCTGGTAACAAATCAAGCTGCTTTGTTCGTGTTCGGAGATTC 125
|||||||||||| || |||||||||||||| ||| | |||||||||||||| ||||||||
Sbjct 72 CTGCATAGACAACAACAATCTGGTAACAAACCAATCCGCTTTGTTCGTGTTTGGAGATTC 131
Query 126 TCTTTTTGATGCCGGAAACAACAACTACATCAATACTGTCTCAAGTTTCCGGTCTAA-TA 184
| | || ||||| |||||||||||||||||| ||||| |||| ||| |||||||||| ||
Sbjct 132 TGTGTTCGATGCTGGAAACAACAACTACATCGATACTTTCTCTAGTGTCCGGTCTAATTA 191
Query 185 TCTGGCCGTACGGTCAAACCAA-TTTCAAGTTTCCC-ACCGGAAGATTATCCGATGGAC- 241
||||||||| ||||||| ||| ||||| | ||| || |||||| | ||||| ||||
Sbjct 192 -CTGGCCGTATGGTCAAA-CAACATTCAA-ATCCCCTACTGGAAGAGTCTCCGACGGACG 248
Query 242 -------CC-GA----A------A--AGGCATGGTTGCCGTCGATCCCGCCAAATCTACA 281
|| || | | | |||||||| || | |||||| |||||| ||||
Sbjct 249 TTTGATTCCTGATTTCATCGCGGAGTACGCATGGTTACCATTGATCCCACCAAATTTACA 308
Query 282 ACCAAACAACGGTAACAATCAATTTACCTATGGAGTAAGTTTTGCTTCTGCTGGCGCCGG 341
|||| | ||||||||| |||||||||||||| |||| ||||||||| | |||||||||
Sbjct 309 ACCACTCCACGGTAACAGCCAATTTACCTATGGGGTAAATTTTGCTTCAGGTGGCGCCGG 368
Query 342 AGCTTTAG-CCGAATCC-TTTCTTGGAATGGTGATAAATTTGGGAACACAGTTAAACAAC 399
|||||| | | ||| || |||| ||| |||||||||||||| ||||||| |||||||||
Sbjct 369 AGCTTTGGTCGGAA-CCTTTTC-CGGATTGGTGATAAATTTGAGAACACAATTAAACAAC 426
Query 400 TTCAAAG-ATGTTGAAAAGA-GCTTGAGATCTGAA-CTAGGAGATGCAGAAACCAAAAGG 456
||| ||| | |||||||| | | ||||| ||| || ||||||||| || || |||
Sbjct 427 TTC-AAGAAGGTTGAAAAAATG-TTGAGGTCT-AAGTTAGGAGATGTTGAGGGGAAGAGG 483
Query 457 GTTTTCTCAAGAGCTGTTTATCTGTTTCATATCGGGGC-CAACGACTATTTTTATCCTTT 515
||| ||||||||||||||||| |||||||||| || | |||||| ||| ||||| ||
Sbjct 484 GTTATCTCAAGAGCTGTTTATTTGTTTCATAT-TGGACTCAACGATTATCAATATCCGTT 542
Query 516 CTCTGCAAACTCCT-CAACTTTCAAATCCAACTCCAAAGAGAAATTCGTCGATTTTGTTA 574
| || ||||||| | || |||| |||||| ||||| ||||||| |||||||| ||||
Sbjct 543 CACTACAAACTCTTCCATTTTTC-AATCCATTTCCAACGAGAAATACGTCGATTATGTTG 601
Query 575 TCGGTAACATTACATTCGTTATCGAGGAAGTGTATAAAATGGGAGGAAGAAAGTTTGGAT 634
| ||| | ||| | | | | | || || | | || | ||||| ||||||||||
Sbjct 602 TTGGT---A--ACA-T-G--A-C-A-GACGT-T-TTCAA---G-GGAAGGAAGTTTGGAT 643
Query 635 TTTTGAACGTGGGACCGTACGAATGTTCACCAAATTCATTGATAAGAGACCGAACAAAGA 694
| |||||| ||||| ||||| ||| ||||| |||||| | | ||||| ||||||||
Sbjct 644 TCTTGAACACAGGACCATACGATTGTGCACCAGCCTCATTGGTTATAGACCAAACAAAGA 703
Query 695 TAGGATCTTG-TTTCAAACCTGTCGCTGAGCTTATCGA-CATGCACAACAAGAAGTTTCC 752
|||||||||| |||| | || ||| || |||| ||| | | |||||||||||||| |||
Sbjct 704 TAGGATCTTGTTTTC-AGCCGGTCACTAAGCTGATCAATC-TGCACAACAAGAAG-CTCC 760
Query 753 CG-ATGTTTTAAGGCGGCTACAA-CGCCAATTATCGGGTTTTAGATACGCCCTTCATGAC 810
| ||| ||| ||||||||| || | || |||| || || | |||| |||| || |||
Sbjct 761 TGAATGGTTTGAGGCGGCTA-AATCATGAACTATCCGGATTCAAATACTCCCTCCACGAC 819
Query 811 TATCACACTTCTCTTTCCGAAAGAATCAACAGTCCTTCAAAATATGGGTTCAAGGAAGGG 870
||||||||||| || || |||||||| || | |||||||||||| ||||||||||| |||
Sbjct 820 TATCACACTTCCCTCTCGGAAAGAATGAATAATCCTTCAAAATACGGGTTCAAGGAGGGG 879
Query 871 AAGAAGGCATGTTGTGGAAGCGGACCACTGAGAGGAATCAATACGTGTGGAAACAGAATA 930
||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||
Sbjct 880 AAGAAGGCATGTTGTGGAAGCGGACCATTGAGAGGAATCAATACGTGTGGAGGCCGAATG 939
Query 931 GGACCGTCGCAAGGTTACG-GCCTATGCGAAAACGTTACCGATTATTTGTTCTATGATTC 989
|||| ||| ||| ||||| | |||| ||||||||||| || ||||||||||||||| |
Sbjct 940 GGACTGTCACAAAATTACGAGT-TATGTGAAAACGTTACAGACTATTTGTTCTATGAT-C 997
Query 990 CTCT-CATTTGACGGAAAAGGCTCATC-GACAAATCGCAGAGCTGATTTGGAACGGGCCG 1047
|| | |||||||||||||| ||| ||| | || ||||| ||||||||||||| ||| |||
Sbjct 998 CTTTTCATTTGACGGAAAAAGCTAATCAG-CAGATCGCTGAGCTGATTTGGAGCGGACCG 1056
Query 1048 -CCTAATGTCACTAGACCTTATAATCTCAAAGCTTTATTTGAACTTA 1093
|| || ||||| |||| |||||||||||||| | ||||||||||
Sbjct 1057 ACC-AACATCACTGGACCCTATAATCTCAAAGCGCTGTTTGAACTTA 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5