BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54010.1
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474528 jgi|Araly1|474528|fgenesh2_kg.1__4482__AT1G54010.1 1727 0.0
> Ahg474528 jgi|Araly1|474528|fgenesh2_kg.1__4482__AT1G54010.1
Length=1280
Score = 1727 bits (935), Expect = 0.0
Identities = 1114/1199 (93%), Gaps = 17/1199 (1%)
Strand=Plus/Plus
Query 44 TTCTCTCTCTCTGTATACTCTCTAAATGATGGCAAAAAACTGTAATTTAGTCAGTGTTCT 103
|||||||||||| | || || ||||| ||||||||| |||||||||||||||||||||||
Sbjct 17 TTCTCTCTCTCTCTCTATTCACTAAACGATGGCAAACAACTGTAATTTAGTCAGTGTTCT 76
Query 104 ATGTGTATTTTTGGTATTGACCCTCTTTAACAAACCCATCACCGTCGCCGGGCAG---AA 160
||||||||||||||||||||| |||||| |||| |||||| ||||| |||| ||| ||
Sbjct 77 ATGTGTATTTTTGGTATTGACTCTCTTTCACAACCCCATCGCCGTCTCCGGACAGATTAA 136
Query 161 TATTCCGGCGGTGGGCTTGTTCACCTTTGGTGACTCCAACTTCGACGCCGGAAACAAACA 220
| |||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 137 TGTTCCGGTGGTGGCCTTGTTCACCTTTGGTGACTCCAACTTCGATGCCGGAAACAAACA 196
Query 221 GACTCTCACCAAAACCTTACTCCCTCAAACTTTCTGGCCGTATGGAAAATCCCGAGATGA 280
|| |||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 197 GAATCTCACCAAAACCTTAGTCGCTCAAGGTTTCTGGCCGTATGGAAAATCCCGAGATGA 256
Query 281 TCCCAACGGCAAATTCTCCGACGGCCTCATCGCTCCAGACTTCCTCGCTAAATTCATGAG 340
||||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||
Sbjct 257 TCCCAACGGCAAATTCTCCGACGGCTTCATCGCTCCGGACTTCGTCGCAAAATTCATGAA 316
Query 341 GATTCCGATCGTGATCCCGCCGGCCCTTCAACCGAACGTCAATGTCTCACGTGGAGCTAG 400
||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 317 GATCCCGATCGCGATCCCGCCGGCGCTTCAACCGAACGTCAATGTCTCACGTGGAGCTAG 376
Query 401 TTTCGCCGTCGCTGATGCTACTCTACTCGGAGCTCCGGTGGAATCTTTGACTCTGAATCA 460
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 377 TTTCGCCGTCGCCGATGCTACTCTACTCGGAGCTCCAGTGGAATCTTTGACTCTGAATCA 436
Query 461 ACAAGTGAGAAAGTTCAATCAAATGAAAGCAGCAAATTGGAATGATGATTTCGTGAAGAA 520
||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||
Sbjct 437 GCAAGTGAGAAAATTCAATCAAATGAAAGCAGCAAATTGGAACGATGACTTCCTGAAGAA 496
Query 521 GTCAGTGTTTATGATATACATTGGTGCAAACGATTACTTGAATTTCACCAAGAACAACCC 580
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 497 GTCAGTGTTTATGATATACGTTGGTGCAAACGATTACTTGAATTTCACCAAGAACAACCC 556
Query 581 TAACGCCGATGCATCTACTCAACAAGCTTTTGTCACTTCCGTGACCAACAAGTTAAAGAA 640
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 TAACGCCGATGCATCTGCTCAACAAGCTTTTGTCACTTCCGTGACCAACAAGTTAAAGAA 616
Query 641 CGATATCAGCTTGTTGTATTCATCAGGAGCGAGTAAATTTGTGATCCAAACCCTAGCTCC 700
||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 617 CGACATCAGCTTGTTGTATTCATCAGGAGCGAGTAAATTCGTGATCCAAACCTTAGCTCC 676
Query 701 ATTGGGTTGCTTACCCATCGTCAGACAAGAGTTCAACACCGGGATGGATCAATGCTATGA 760
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 677 ATTGGGTTGCTTACCCATCGTCAGACAAGAGTACAACACCGGGATTGATCAATGCTATGA 736
Query 761 GAAACTCAACGATTTGGCTAAACAACACAACGAAAAAATTGGACCGATGTTGAACGAATT 820
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 737 GAAACTCAACGATTTGGCTAAACAACACAACGAAAAAATTGGACCGATGTTGAACGAAAT 796
Query 821 GGCTAGAACAGCTCCTGCATCAGCTCCTTTCCAATTCACCGTCTTTGATTTCTACAACGC 880
|||||||||| |||||| | | || |||||| ||||| |||||||||||||| ||
Sbjct 797 GGCTAGAACAACTCCTG-----G-T--TT-CCAATTTACCGTTTTTGATTTCTACAATGC 847
Query 881 GATTCTTACTAGGACGCAGAGGAACCAAAACTTCCGATTTTTCGTTACGAACGCATCGTG 940
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 848 CATTCTTACTAGGACGCAGAGGAACCAGAACTTCCGGTTTTTCGTTACGAACGCATCGTG 907
Query 941 CTGCGGAGTTGGGACACATGATGCTTATGGTTGCGGTTTTCCTAACGTACATTCGAGGCT 1000
|||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||
Sbjct 908 CTGCGGAGTTGGGACACACGATGCGTATGGTTGCGGTTTACCTAACGTGCATTCGAGGCT 967
Query 1001 ATGCGAGTACCAACGGTCTTACCTATTCTTCGACGGACGTCACAACACTGAGAAGGCGCA 1060
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 968 ATGCGAGTACCAACGGTCTTACCTATTCTTCGACGGACGTCACAACACCGAGAAGGCGCA 1027
Query 1061 AGAGATGTTTGGTCATCTTCTTTTTGGAGCCGATACAAATGTTATCCAACCGATGAACAT 1120
||| ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| |
Sbjct 1028 AGAAATGTTTGGTCATCTTCTTTTTGGGGCCGATACAAATGTTGTCCAACCAATGAACGT 1087
Query 1121 CCGTGAGCTTGTCGTTTACCCTGCCGATGAACCTATGCGTGAGTCTTGGGTGCC-CC--C 1177
|||||||||||| |||||||| | |||||||||||||||||||| ||||||||| || |
Sbjct 1088 CCGTGAGCTTGTTGTTTACCCAGTCGATGAACCTATGCGTGAGTTTTGGGTGCCTCCAAC 1147
Query 1178 AACGTCAGCCACCGTTCAA-CTCAGGGAGAGCCGCGGTTACGAGTATTACTGAGTCTCT 1235
|||||||||||| |||||| | ||| || ||||||||||||||||||||||||||||||
Sbjct 1148 AACGTCAGCCACTGTTCAAGC-CAGCGATAGCCGCGGTTACGAGTATTACTGAGTCTCT 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53059711285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5