BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54020.2
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474531 jgi|Araly1|474531|fgenesh2_kg.1__4485__AT1G54020.2 1821 0.0
Ahg478836 jgi|Araly1|478836|fgenesh2_kg.3__1537__AT3G14210.1 377 9e-104
> Ahg474531 jgi|Araly1|474531|fgenesh2_kg.1__4485__AT1G54020.2
Length=1166
Score = 1821 bits (986), Expect = 0.0
Identities = 1109/1169 (95%), Gaps = 6/1169 (1%)
Strand=Plus/Plus
Query 22 TTCTGGTTAACTGAAAATGGAGTGTAGTTCAGTGAGTGTACTAGGAATATTACTGGTATT 81
||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1 TTCTGCTTAACTGAAAATGGAGTGTAGTTTAGTGAGTGTACTAGGAATATTATTGGTATT 60
Query 82 TCCTCTCCTT-CATAACCTTGTCACCATCTCCGGGCAGAATCTTCCGGCGGTGGGTTTGT 140
| |||| ||| || || ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 61 TTCTCT-CTTCCACAATCTTGTCACCGTCTCCGGGCAGAATATTCCGGCGGTGGGTTTGT 119
Query 141 TCACTTTCGGAGATTCCAACTTCGACGCTGGAAATAAAAAGTTCCTCACAAGTGCTCCAC 200
|||| ||||||||||||| ||||||||| |||||||||||||||||||| |||||| |||
Sbjct 120 TCACATTCGGAGATTCCAGCTTCGACGCCGGAAATAAAAAGTTCCTCACTAGTGCTTCAC 179
Query 201 TTCCTCAAAACTTTTGGCCTTACGGTAAATCTCGAGATGACCCTAAGGGCAAGTTTTCTG 260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 TTCCTCAAAACTTTTGGCCTTACGGTAAATCTCGAGATGACCCTAAGGGCAAGTTTTCCG 239
Query 261 ATGGCAAAATTGTCCCGGACTTTATTGCAAAATTCATGGGGATACCACACGATTTACCGC 320
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 240 ATGGCAAAATTGTCCCGGACTTCATTGCAAAATTCATGGGGATTCCACACGATTTACCGC 299
Query 321 CGGCGCTAAAACCCGGCA-CCGATGTGTCACGAGGAGCCAGCTTCGCCGTCGGGTCCGCT 379
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 CGGCGCTAAAACCCGG-AGCCGATGTGTCACGAGGAGCCAGCTTCGCCGTCGGGTCTGCT 358
Query 380 TCCATTCTTGGATCTCCAAAAGATTCTTTGGCTCTGAATCAACAAGTGAGGAAATTCAAT 439
|| ||| ||||||| |||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 359 TCTATTGTTGGATCACCAAGAGATTCTTTGACTCTGAATCAACAAGTGAGGAAATTCAAT 418
Query 440 CAGATGATATCAAATTGGAAAGTGGATTACATTCAGAAATCAGTGTTTATGATTAGCATT 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CAGATGATATCAAATTGGAAAGTGGATTACATTCAGAAATCAGTGTTTATGATTAGCATT 478
Query 500 GGTATGGAAGATTACTACAACTTTACCAAAAACAATCCTAATGCTGAAGTTTCTGCTCAA 559
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 479 GGTATGGAAGATTACTACAACTTCACCAAAAACAATCCTAATGCTGAAGTTTCGGCTCAA 538
Query 560 CAAGCTTTCGTTACTTCTGTCACTAACCGGTTTAAGAGTGATATCAACTTGTTGTATTCA 619
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 539 CAAGCTTTCGTTACTTCTGTCACTAACCGATTAAAGAGTGATATCAACTTGTTGTATTCA 598
Query 620 TCTGGAGCTAGTAAATTCGTCGTACACTTGCTAGCGCCATTAGGTTGTTTACCGATCGCA 679
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 599 TCTGGAGCTAGTAAATTCGTCGTACAGTTGCTAGCGCCATTAGGTTGTTTACCGATCGCA 658
Query 680 AGACAAGAATTTAAAACCGGTAACAATTGTTACGAGAAACTCAATGATTTGGCCAAACAA 739
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 659 AGACAAGAATTTAAAACCGGCAATGATTGTTACGAGAAACTCAATGATTTGGCCAAACAA 718
Query 740 CACAACGCTAAAATTGGACCGATTTTGAACGAAATGGCGGAAACTAAACCGGATTTCCAA 799
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 719 CACAACGCTAAAATCGGACCGATGCTGAACGAAATGGCGGAAACTAAACCGGATTTCCAA 778
Query 800 TTCACCGTTTTCGATTTCTACAACGTTATTCTTCGCAGGACACAAAGAAACATGAACTAC 859
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 779 TTCACCGTTTTCGATTTCTACAACGTTATTCTTCGTAGGACACAAAGAAACATGAACTAC 838
Query 860 CGGTTTTCCGTGACGAATATATCGTGTTGCGGTGTTGGGACGCATTATGCATATGGTTGT 919
|| ||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 839 CGATTTTCCGTGACAAATATATCGTGTTGCGGTGTTGGGACGCATAACGCATATGGTTGT 898
Query 920 GGTTTACCTAACGTGCACTCGAAGTTATGCGAATATCAAAGATCCTACCTTTACTTCGAC 979
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 899 GGTTTACCTAACGTGCACTCGAAATTATGCGAATATCAAAGATCGTACCTTTACTTCGAT 958
Query 980 GCACGTCATAACACAGAGAAAGCACAAGAAGCGTTTGCTCATCTTATCTTTGGAGCTGAC 1039
||||| || ||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 959 GCACGCCACAACACAGAGAAGGCACAAGAAGCGTTCGCTCATCTTATCTTTGGAGCCGAC 1018
Query 1040 CCAAATGTTATCCAACCTATGAATGTTCGTGAGCTCATGGTGTATCCTGTTAATGAGCCT 1099
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1019 CCAAATGTTATCCAACCTATGAATGTTCGTGAGCTCATTGTCTATCCTGTTAATGAGCCT 1078
Query 1100 ATGCGTGAGTTTTGGGAGGATCCAATGGATGAGAAGTTATCGTTAGTCCAATACT-AGTG 1158
||||||||||||||||||||||||| ||| ||||||||||| |||||| ||| || ||||
Sbjct 1079 ATGCGTGAGTTTTGGGAGGATCCAACGGAGGAGAAGTTATCATTAGTCGAAT-CTTAGTG 1137
Query 1159 GATCTGTCTACCTCGTTTAGTTCTTGAGC 1187
||||| ||||||| |||||||||||||||
Sbjct 1138 GATCTATCTACCTTGTTTAGTTCTTGAGC 1166
> Ahg478836 jgi|Araly1|478836|fgenesh2_kg.3__1537__AT3G14210.1
Length=1230
Score = 377 bits (204), Expect = 9e-104
Identities = 758/1020 (74%), Gaps = 59/1020 (6%)
Strand=Plus/Plus
Query 137 TTGTTCACTTTCGGAGATTCCAACTTCGACGCTGGAAATAAAAAGTTCCTCA--C-AAGT 193
||||||||||||||||| || ||| |||||| ||||| ||| ||| |||| | |||
Sbjct 160 TTGTTCACTTTCGGAGACTCTTACTACGACGCCGGAAACAAAGTGTTTCTCAGCCAAAG- 218
Query 194 GCTCCA-CTTCCTCAAAACTTTTGGCCTTACGGTAAATCTCGAGA-TGACCCTAAGGGCA 251
| ||||| |||| || |||||||||||| ||||| || || | ||||||| ||||
Sbjct 219 AAAAGATCTTCCACAAATCTATTGGCCTTACGGAAAATCCCGCGACT-ACCCTAATGGCA 277
Query 252 AGTTTTCTGATGGCAAAATTG-TCCCGGACTTTATTGCAAAATTCATGGGGATACC-ACA 309
||||||| || ||| | || | |||| || ||||| || | ||||| || || | |
Sbjct 278 AGTTTTCCGACGGCCACATCGTTCCC-GATTTTATCGCTGATTTCATCTCTATTCCGA-A 335
Query 310 -CGA-T-TTACCGCCGGCGCTAAAACCCGGCACCGATGTGTCACGAGGAGCCAGCTTCGC 366
|| | | || ||||| || ||||| || ||| | ||||| |||| |||||| ||
Sbjct 336 TGGAGTACTCCCACCGGCACTTAAACCGGGTGTTGATATTTCACGTGGAGTCAGCTTAGC 395
Query 367 CGTCG--GGTCCGCTTCCATTCTTGGATCTCCAAAAGATTCTTTGGCTCTGAATCAACAA 424
||||| | | ||||| ||||| ||| ||||| || ||| || | || |||||||||
Sbjct 396 CGTCGCCGAT--GCTTCTATTCTCGGAGCTCCAGCTGAATCTATGACACTAAATCAACAA 453
Query 425 GTGAG-GAAATTC-AATCAGATGATATCAAATTGGAAAGTGGA-TTACATTC-AGAAATC 480
||| | |||||| || | |||| ||| |||||||| | | |||| || ||||||
Sbjct 454 GTG-GTTAAATTCAAAAC-TATGAAATCTAATTGGAACG-ACAGCTACA-TCGGGAAATC 509
Query 481 AGTGTTTATGAT-TAGCATTGGTATGGAAGATTACTACAACTTT-ACCAAAAACAATCCT 538
| |||||||||| || |||||||| ||||||||| | || ||| ||||| ||| ||
Sbjct 510 ACTGTTTATGATATA-CATTGGTACGGAAGATTATTTGAA-TTTCACCAAGGCCAACCCC 567
Query 539 AATGCTGAAGTTTCTGCTCAACAAGCTTTCGTTACTTCTGTCACTAACCGGTTTAAGAGT 598
| || || | |||||||||||||||||| || ||||| || ||||||| || ||||
Sbjct 568 ACGGCAGACGCTTCTGCTCAACAAGCTTTTGTCACTTCCGTTACTAACCAATTAAAGAAC 627
Query 599 GATATCAACTTGTTGTATTCATCTGGAGCTAGTAAATTCGTCGTACACTTGCTAGCGCCA 658
|| ||| |||||| | || | ||||| || |||||||| || || |||||||| |||
Sbjct 628 GACATCGGTTTGTTGCACTCTTGGGGAGCGAGGAAATTCGTGGTTCAATTGCTAGCACCA 687
Query 659 TTAGGTTGTTTACCGATCGCAAGACAAGAATTTAAAACCGGTAACAATTGTTACGAGAAA 718
|| || || |||||||||| |||||||||| |||||||| ||| | ||||| |||
Sbjct 688 TTGGGATGCTTACCGATCGTGAGACAAGAATACAAAACCGGCAACGACTGTTATGAGCCG 747
Query 719 CTCAATGATTTGGCCAAACAACACAACGCTAAAATTGGACCGATTTTGAACGAAATGGCG 778
|||||||||||||||||||||||||||| ||||| || || || || |||| | | ||
Sbjct 748 CTCAATGATTTGGCCAAACAACACAACGAAAAAATCGGCCCAATGTTAAACGCATTTGCT 807
Query 779 GAAA-CTA--A--A-CC-----GGATTTCCAATTCACCGTTTTCGATTTCTACAACGTTA 827
||| ||| | | || || |||| | |||||||| ||||||||||||||||
Sbjct 808 -AAATCTAGTACTAGCCCCAATGGTTTTC-AGTTCACCGTCTTCGATTTCTACAACGCCG 865
Query 828 TTCTTCGCAGGA---C-ACA--AAGAAA-CATGAACTACCGGTTTTCCGTGACGAATATA 880
||||||| |||| | ||| ||||| | | |||||| | || | | | |||||| |
Sbjct 866 TTCTTCGTAGGATTACGACAGGAAGAAGTCTT-AACTACAGATTGTACATAACGAAT-TC 923
Query 881 -TCGTGTTGCGGTGTTGGGACGCATTATGCATATGGTTGTGGTTTACCTAACGTGCACTC 939
|| |||||||||||||||||||| ||||||||||||| || | |||||||||||
Sbjct 924 GTCCTGTTGCGGTGTTGGGACGCACAATGCATATGGTTGCGGAATGGGAAACGTGCACTC 983
Query 940 GAAGTTATGCGAATATCAAAGATCCTACCT-TTACTTCGACGCACGTCATAACACAGAGA 998
|||| |||| || || |||||||| ||| | || |||||| | |||||| ||| ||||||
Sbjct 984 GAAGCTATGTGAGTACCAAAGATCTTACTTCTT-CTTCGATGGACGTCACAACTCAGAGA 1042
Query 999 AAGCACAAGAAGCG-TTTGCTCATCTTATCTTTGGAGCTGACCCAAATGTTATCCAACCT 1057
| | || || || |||||||||||| | | |||||| ||||| | ||| |||| ||
Sbjct 1043 AGGTTCAGGA-GCAATTTGCTCATCTTCTATATGGAGCCGACCCTAGCGTTGTCCAGCCA 1101
Query 1058 ATGAATGTTCGTGAGCTCATGGTGTATCCTGTTA-ATGAGCCTATGCGTGAGTTTTGGGA 1116
|||| || |||||||| || || || || | ||| |||||||||||| ||||||
Sbjct 1102 ATGACGGTCCGTGAGCTAATCGTCTACCCAACCGGA-GAGACTATGCGTGAGTATTGGGA 1160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48263612922
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5