BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54030.1
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474533 jgi|Araly1|474533|fgenesh2_kg.1__4487__AT1G54030.1 1925 0.0
> Ahg474533 jgi|Araly1|474533|fgenesh2_kg.1__4487__AT1G54030.1
Length=1277
Score = 1925 bits (1042), Expect = 0.0
Identities = 1190/1261 (94%), Gaps = 11/1261 (1%)
Strand=Plus/Plus
Query 132 atggcgattctcaaatctcacttcttcttactcttccctcttcttcttc-tc--cacttt 188
|||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 1 ATGGCGATTCTCAAATCTCACTTCTTCTCACTCTTCCCTCTTCTTCTTCTTCTTCACTTT 60
Query 189 cacactgtctccttTGCTCAGACGCTCTTTGTGTTCGGAGATGGTCTTTACGACGCCGGA 248
| ||| || ||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 61 CCCACCGTTTCCTTCGCTCAGACGCTTTTTGTGTTCGGCGATGGTCTTTACGACGCCGGA 120
Query 249 AACAAACAGTTTCTCTCTCAGAACCGAGTTGACGCAAGCTTTCCTCCTTATGGAGTCACT 308
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACAAACAGTTCCTCTCTCAGAACCGAGTTGACGCAAGCTTTCCTCCTTATGGAGTCACT 180
Query 309 GTAGGACAAGCCACCGGACGGTGGTCCGATGGTTCTATCGTTCCTGATTATCTTGCTAAA 368
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTAGGACAAGCCACCGGACGGTGGTCCGATGGTTCTATCGTTCCTGATTATCTTGCTAAT 240
Query 369 TTCATGGGAATTCCTAAAATCTCTCCGATTCTCCTAACCACGGCGGATTTTTCTCACGGA 428
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCATGGGAATTCCTCGAATCTCTCCGATTCTCCTAACCACGGCGGATTTTTCTCACGGA 300
Query 429 GCTAATTTCGCCATCGCCGACGC-TACCGTTCTTGGCTCTCCTCCGGAGACGATGACTTT 487
||||||||||||||||||||||| | | || || ||||||||||| ||||||||||||||
Sbjct 301 GCTAATTTCGCCATCGCCGACGCCT-CTGTACTCGGCTCTCCTCCAGAGACGATGACTTT 359
Query 488 GTCACAACAAGTGAAGAAATTCTCGGAAAACAAGAATAAGTGGACAAATCAAACACGTTC 547
|||||||||||||| |||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 360 GTCACAACAAGTGAGGAAATTCTTGGAAAACAAGAACAAATGGACAAATCAAACACGTTC 419
Query 548 TGAAGCTATCTACTTGATCTACATTGGTTCTGATGATTACTTGAGCTATGCTAAGAGTAA 607
|||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct 420 TGAAGCAATCTACTTGTTCTACATCGGTTCTGATGATTACTTGAACTATGCTAAGAATAA 479
Query 608 TCCAAGTCCATCAGAT-ACTCAGAAACAAGCTTTTGTTGATCAAGTCATCACTACCATAA 666
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 TCCAAGTCCATCAGATGA-TCAGAAACAAGCTTTTGTTGATCAAGTCATCACTACCTTAA 538
Query 667 AAGCAGAAATAAAGGTGGTTTACGGGTCTGGCGGAAGGAAATTCGCATTCCAGAACTTGG 726
|||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||
Sbjct 539 AAGCAGAAATAAAGGTGGTTTACGGGTCAGGCGGAAGGAAGTTTGCGTTCCAGAACTTGG 598
Query 727 CACCGTTAGGTTGCTTACCGGCCGTGAAACAAGCAAGCGGAAATGTTCAAGAATGTGTGA 786
|||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 599 CACCTTTGGGTTGCTTACCGGCTGTGAAACAAGCAAGCGGAAATGTTCAAGAATGCGTGA 658
Query 787 AATTGCCTTCGGAAATGGCTGCTTTGCATAACAAGAAACTTTTGCAGCTCTTGGTTGAAC 846
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AATTGCCTTCAGAAATGGCTGCTTTGCATAACAAGAAACTTTTGCAGCTCTTGGTTGAAC 718
Query 847 TATCAAGAGAACTAAATGGTTTCCAGTACTCGTTTTACGACTTCTTTAGCTCGATCCAAA 906
| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTTCACGAGAACTCAATGGTTTCCAGTACTCGTTTTACGACTTCTTTAGCTCGATCCAAA 778
Query 907 ACAGAGTTATCAAGTCTAAGACTTATACATTCGAGACAGGAAACGCTGCTTGTTGTGGAA 966
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 779 ACAGAGTTATCAAGTCTAAGACTTACACATTCGAGACAGGAATCGCTGCTTGTTGTGGAA 838
Query 967 CTGGCTCTATCAACGGGAGTAATTGCTCAGCTAAAAATGTATGCGCCAAGCCTGAAGAGT 1026
||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||
Sbjct 839 CTGGCTCTATCAACGGGAGCGATTGCTCTGCTAAAAATGTATGTGCCAAGCCTGAAGAGT 898
Query 1027 ATATCTTCTTTGATGGTAAGCATTTGACGCAAGAAGCCAACCTTCAGGTCGGGCATTTGA 1086
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 899 ATATCTTCTTTGACGGTAAGCATTTGACGCAAGAAGCGAACCTTCAAGTCGGGCATTTGA 958
Query 1087 TGTGGGGAGCAGATCCGGAAGTGATTGGACCGAACAATATCAGGGAGCTTATGGTCCTTC 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGTGGGGAGCAGATCCGGAAGTGATTGGACCGAACAATATCAGGGAGCTTATGGTCCTTC 1018
Query 1147 CTCTAGA-CATTACAGTCATCTTAGCTGGTATACAAGAAGCTATGGCTGCCATGAGACCG 1205
||||||| | |||| ||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1019 CTCTAGAAC-TTACCGTCATCTTAGCTGATATACAGGAAGCTATGGCTGCCATGAGACCG 1077
Query 1206 AGACAGAGCAACATTGAGAGTCTCTATGATATCAAGAAGATGGAGTCAGAGATGGATAAT 1265
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1078 AGACAGAGCAAAATTGAGAGTCTCTATGATATCAAGAAGATGGAATCAGAGATGGAGAAT 1137
Query 1266 CATTGGCTTTATCAAGTTGACAAAGCTATCTCCTTTATGATATAAGATTGTGGTTACAGT 1325
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
Sbjct 1138 CATTGGCTTTATCAAGTTGACAAAGCTAGCTCCTTTATGATCTAAGATTGTGGTTACAAT 1197
Query 1326 TTGATTTAAGCGAGAGAGTTTAAGAGCTAGTGTAACAAAGAA-CTAG-CAAGAAAACTGA 1383
|||| ||||| ||||||| |||||||||||||||||| ||| |||| ||||||||||||
Sbjct 1198 ATGATCTAAGCCAGAGAGTATAAGAGCTAGTGTAACAAGGAAACTAGACAAGAAAACTGA 1257
Query 1384 A 1384
|
Sbjct 1258 A 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53631064960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5