BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54040.2
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337565 jgi|Araly1|337565|fgenesh1_pg.C_scaffold_1004130 989 0.0
> Ahg337565 jgi|Araly1|337565|fgenesh1_pg.C_scaffold_1004130
Length=1029
Score = 989 bits (535), Expect = 0.0
Identities = 882/1046 (84%), Gaps = 37/1046 (4%)
Strand=Plus/Plus
Query 65 ATGGCTCCGACTTTGCAAGGCCAGTGGATCAAGGTGGGGCAGAAAGGAGGAACGGGACCA 124
|||||| ||||||| |||||| |||||||||||||| ||||| |||||||| |||||||
Sbjct 1 ATGGCTGCGACTTTTCAAGGCGGGTGGATCAAGGTGGAGCAGAGAGGAGGAAAGGGACCA 60
Query 125 GGACCTAGAAGTTCACACGGCATAGCCGCGGTCGGAGACAAGCTCTACAGTTTCGGCGGC 184
||||| ||| ||||||||||||| || | | | |||||||| |||||| |||| || |||
Sbjct 61 GGACCAAGATGTTCACACGGCATGGCGGTGATTGGAGACAAACTCTACTGTTTGGGAGGC 120
Query 185 GAGTTAACACCAAAC-AAACACATCGACAAAGACCTCTACGTCTTTGACTTCAACACTCA 243
||||||| ||||||| || | ||||||||||||||| ||||| |||||||||||||||||
Sbjct 121 GAGTTAAAACCAAACGAAGC-CATCGACAAAGACCTTTACGTTTTTGACTTCAACACTCA 179
Query 244 AACTTGGTCAATCGCTCAAC-CCAAA-GGAGACG-CCCCAACTGTATCCTG--C-TTAGG 297
|| ||||||||||||| | |||| ||||||| |||| | | || | | | || ||
Sbjct 180 CACCTGGTCAATCGCTC--CGGCAAACGGAGACGTCCCC--C-GCAT-CAGCACTTTCGG 233
Query 298 CGTGCGCATGGTGGCCGTGGGAACTAAGATCTATATCTTTGGAGGCCGCGATGAGAACCG 357
||| || ||||| ||||||||||||||| ||||| |||||||||| ||| |||| || ||
Sbjct 234 CGTCCGTATGGTTGCCGTGGGAACTAAGCTCTATGTCTTTGGAGGTCGCAATGAAAAGCG 293
Query 358 CAACTTCGA-AAACTTTCGCTCCTACGATACGGTGACATCCGAGTGGACA-TTCCTGACG 415
| | ||| | ||||| ||| || |||||||||| | |||||||| | ||||||||
Sbjct 294 CGAGTTC-AGCGACTTTTACTCGTATGATACGGTGAAAAACGAGTGGA-AGTTCCTGACA 351
Query 416 AAGCTTGATGAGGTGGGAGGACCCGAGGCTCGTACTTTCCATTCGATGGCTTCGGATGAA 475
||||| |||| | ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 352 AAGCTCGATGTTGAGGGAGGACCCGAGGCTCGTACTTTCCATTCGATGGCTTCAGATGAA 411
Query 476 AACCATGTGTATGTATTCGGTGGGGTGAGCAAAGGC-G-GTACT-ATGAATACTCCC-AC 531
||| | |||||||||||||||||||||||||||||| | | | ||||| |||||| |
Sbjct 412 AACTACGTGTATGTATTCGGTGGGGTGAGCAAAGGCGGCGGGTTGATGAAAACTCCCGA- 470
Query 532 GCGGTTCAGGACAATCGAGGCGTATAACATTGCTGATGGGAAATGGGCTCAGCTACCGGA 591
||||||||| || ||||||||||||||| |||||||||||||||||| ||||||||| ||
Sbjct 471 GCGGTTCAGAACGATCGAGGCGTATAACGTTGCTGATGGGAAATGGGTTCAGCTACCAGA 530
Query 592 TCCAGGAGATAACTTCGAGAAAAGAGGAGGAGCGGGATTCGC-TGTGGTACAAGGGAAGA 650
||| ||||| ||||| |||||||||||||| ||||||||| | ||||| ||||| ||||
Sbjct 531 TCCTGGAGAAAACTTTGAGAAAAGAGGAGGTGCGGGATTC-CTTGTGGCGCAAGGCAAGA 589
Query 651 TTTGGGTGGTTTATGGGTTTGCGACCTCGA-TTGTGCCCGGAGGCAAAGA-TGACTATGA 708
|||||||||| |||||||||||||| |||| || |||| ||||| ||| | ||||| ||
Sbjct 590 TTTGGGTGGTATATGGGTTTGCGACTTCGAGTT-TGCCTGGAGG-AAAAAGCGACTACGA 647
Query 709 GTCTAATGCTGTGCAATTCTATGATCCGGCTTC-CAAAAAGTGGACCGAAGTAGAGACTA 767
|||||||||||||||||||| ||||||||| || | ||||||||| |||||||||||||
Sbjct 648 GTCTAATGCTGTGCAATTCTTTGATCCGGC-TCTCGGAAAGTGGACAGAAGTAGAGACTA 706
Query 768 CAGGAGCGAAACCTTCCGCAAGGAGCGTGTTTGCCCATGCGGTAGTGGGAAAGTATATAA 827
||||||| ||||||||||| |||||||||||||| ||||| | ||||||||| ||||||
Sbjct 707 CAGGAGCAAAACCTTCCGCGAGGAGCGTGTTTGCACATGCAGCAGTGGGAAAACATATAA 766
Query 828 TAATATTTGCAGGTGAGGTATGGCCTGATCTCAATGG-GCA-TTATGGTCCCGGGACGCT 885
||||||||| ||||||| | ||||| || | ||| || || ||| ||||| |||||| |
Sbjct 767 TAATATTTGGAGGTGAGATCTGGCCAGA-CCCAAAGGCACATTTA-GGTCCAGGGACGTT 824
Query 886 GTCCAATGAGGGATATGCGTTGGACACCGAGACACTGGTGTGGGAAAAGTTGGGAGAAGA 945
||| || || || || |||||| |||| |||||| | || ||||| ||||| |||| ||
Sbjct 825 GTCTAACGAAGGTTACGCGTTGAACACTGAGACATTAGTCTGGGAGAAGTTTGGAGGAGG 884
Query 946 AGGTGCACCAGCCATACCACGAGGTTGGACTGCCTATACTGCTGCCACTGTCGATGGAAA 1005
|| || ||| | || ||||| |||||||||||||| || ||||||| || |||||||
Sbjct 885 AGATGAACCGGAGATGCCACGCGGTTGGACTGCCTACACCACTGCCACCCTCTATGGAAA 944
Query 1006 GAATGGCCTCCTCATGCATGGCGGAAAGCTTCCGACCAACGAGC-GAACTGATGATCTCT 1064
||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 945 GAATGGCCTCCTCATGCATGGCGGAAAGCTTCCGACCAACG-GCCGCGCTGATGATCTCT 1003
Query 1065 ACTTCTATGCGGTCAATTCAGCTTAA 1090
||||||||||||||||||||||||||
Sbjct 1004 ACTTCTATGCGGTCAATTCAGCTTAA 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51275323365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5