BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G54050.1

Length=680
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg314711 jgi|Araly1|314711|fgenesh1_pm.C_scaffold_1003491           665    0.0  


> Ahg314711 jgi|Araly1|314711|fgenesh1_pm.C_scaffold_1003491
Length=474

 Score =  665 bits (360),  Expect = 0.0
 Identities = 437/474 (92%), Gaps = 6/474 (1%)
 Strand=Plus/Plus

Query  77   ATGAGTGCTGTTGCGATTAACCACTTTTTTGGCTTACCGGAGGCGATCGAGAAGCTAATT  136
            |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct  1    ATGAGTGCTGTTGCGATTAACCACTTGTTTGGCTTACCGGAGACGATCGAGAAGCTAATT  60

Query  137  CTCCCGATTTCTCGTTCCGGCGAAAGTAATAACGAGAGTCGTGGA--A-GAGGAAGTAGC  193
            ||||||||||| |||||||||||| ||||||||||||||||||||  | ||||||||| |
Sbjct  61   CTCCCGATTTCCCGTTCCGGCGAAGGTAATAACGAGAGTCGTGGAGGAGGAGGAAGTAAC  120

Query  194  AATAATATCCCAATAGACATTTTGGAATCTCCCAAAGAATACATATTTTATCTCGATATC  253
            || ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  121  AACAATATCCCAATCGACATTTTGGAATCTTCCAAAGAATACATATTTTATCTCGATATC  180

Query  254  CCCGGAATTTCAAAATCAGATATCCAGGTTACAGTGGAGGAAGAGAGGACTTTAGTGATA  313
            |||||||| || ||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct  181  CCCGGAATCTCCAAATCCGATATCCAGGTTACTGTGGAGGAGGAGAGGACTTTGGTGATA  240

Query  314  AAGAGTAATGGGAAGAGGAAGAGAGATGATG---ATGAGAGTGAAGAAGGGTCTAAGTAT  370
            ||||||||||||||||| |||||||||||||   |||||||||||||||| |||||||| 
Sbjct  241  AAGAGTAATGGGAAGAGAAAGAGAGATGATGATAATGAGAGTGAAGAAGGATCTAAGTAC  300

Query  371  ATTAGACTCGAGAGGAGACTTGCTCAGAATTTGGTTAAGAAGTTCCGGTTACCAGAAGAT  430
            |||||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct  301  ATTAGACTTGAGAGGAGACTTGCTCAGAATCTGGTTAAGAAGTTCCGATTACCGGAAGAT  360

Query  431  GCTGATATGGCTTCTGTAACGGCTAAATATCAAGAAGGTGTTTTGACAGTTGTTATCAAG  490
            |||||  ||||| |||| ||||| |||||||||||||| |||||| |||||||| |||||
Sbjct  361  GCTGACGTGGCTGCTGTTACGGCCAAATATCAAGAAGGGGTTTTGTCAGTTGTTGTCAAG  420

Query  491  AAGCTACCGCCACAGCCGCCGAAACCTAAGACTGTTCAAATCGCtgtttcttga  544
            ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  AAGTTACCGCCTCAGCCGCCGAAACCTAAGACTGTTCAAATCGCTGTTTCTTGA  474



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24970510635


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5