BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G54060.1 Length=1646 Score E Sequences producing significant alignments: (Bits) Value Ahg474535 jgi|Araly1|474535|fgenesh2_kg.1__4489__AT1G54060.1 2004 0.0 > Ahg474535 jgi|Araly1|474535|fgenesh2_kg.1__4489__AT1G54060.1 Length=1553 Score = 2004 bits (1085), Expect = 0.0 Identities = 1470/1638 (90%), Gaps = 97/1638 (6%) Strand=Plus/Plus Query 21 AAAAAATGGCCAAAGCATAAATACCTTATAGCGATATTTGAGTATTTACCATAAAACCAT 80 |||||||||| |||||||||||||||||||||||||| | | ||||||||||||||||| Sbjct 1 AAAAAATGGCAAAAGCATAAATACCTTATAGCGATATGTCA--ATTTACCATAAAACCAT 58 Query 81 TCGAATACTGTCACGGTTCTAAATTTCTAATATTGTTCTTTTGTTATTAAAGGAAAGAGT 140 ||| ||| |||||| | | ||| | | || ||| |||||||||| ||||||| Sbjct 59 ACGAGTAC--TCACGG-T-T--ATTGC---T-TT-TTC----GTTATTAAAGAAAAGAGT 103 Query 141 GAAGGGTGTTTTCGTCATTTAACATATCCATCGGGTCAATAACGGAGATTACCTATCCGG 200 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 104 GAAGGGTGTTTTCGTCATTTCTCATATCCATCGGGTCAATAACGGAGATTACCTATCCGG 163 Query 201 TGACCTTATCCCCTCGCCGGTGAGCGAATCTCAGATCCAAAATTTTGCAAAATCCTCAGA 260 |||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 164 TGACCTTATCCCCTCGCCGGTGAGCGAATCTCAGATCCAAAATTTTGC---A--CT---- 214 Query 261 TCGTCTTACCTTCTCCGAATCGATCGATTTTTCATGGAGGACGACGACGAGATTCAGTCA 320 | || | || | | ||||| |||| |||||||||||||||||||||||||||||| Sbjct 215 T--TC-T-CCGAAT-C-AATCGGTCGA-CTTTCATGGAGGACGACGACGAGATTCAGTCG 267 Query 321 ATTCCATCTCCGGGAGATTCTTCCCTTTCACCACAAGCTCCTCCTTCTCCGCCGATTTTG 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 268 ATTCCATCTCCGGGAGATTCTTCCCTTTCACCACAAGCTCCTCCTTCTCCGCCGATTTTG 327 Query 381 CCAACAAACGACGTGACGGTGGCCGTCGTGAAGAAACCACA-ACCG-GGGCTTTCTTCTC 438 |||||||||||||| |||||||||||||||||||||||||| | || | ||||||||| Sbjct 328 CCAACAAACGACGTTACGGTGGCCGTCGTGAAGAAACCACAGA-CGCTAG-TTTCTTCTC 385 Query 439 AATCTCCGTCCATGAACGCTTTAGCGTTAGTGGTTCATACTCCTTCTGTAACCGGTGGTG 498 |||||||||| | |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 386 AATCTCCGTCGAGGAACGCTTTAGCGTTAGTGGTTCATACTCCTTCTGTAACC---GGTG 442 Query 499 GTGGTAGCGG-AA-A-CAGAAACGGACgaggaggaggaggaggaagcggtggtggtggag 555 |||||||||| || | ||||||||||| |||||||||||||||||||||| | Sbjct 443 GTGGTAGCGGTAATACCAGAAACGGAC---------GAGGAGGAAGCGGTGGTGGTGGCG 493 Query 556 gaggaAGAGATGATTGTTGGAGCGAAGAAGCTACAAAGGTTCTAATCGAAGCTTGGGGAG 615 |||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||| Sbjct 494 GAGGAAGAGACGATTGTTGGAGCGAAGAAGCAACCAAGGTTCTAATCGACGCTTGGGGAG 553 Query 616 ATCGATTCTCTGAACCAGGTAAAGGAACTTTGAAGCAACAACATTGGAAAGAAGTAGCTG 675 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 554 ATCGATTCTCTGAACCAGGTAAAGGAACTTTGAAGCAACAACATTGGAAAGAAGTAGCTG 613 Query 676 AGATTGTGAACAAGAGTCGTCAATGCAAATACCCTAAAACTGATATTCAGTGTAAGAACA 735 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 614 AGATTGTGAACAAGAGTCGTCAATGCAAATACCCTAAAACTGATATACAGTGTAAGAACA 673 Query 736 GAATTGATACGGTGAAGAAGAAGTATAAGCAAGAGAAAGCTAAGATTGCTTCTGGTGATG 795 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 674 GGATTGATACGGTGAAGAAGAAGTATAAGCAAGAGAAAGCCAAGATTGCTTCTGGTGATG 733 Query 796 GACCTAGTAAATGGGTTTTCTTCAAGAAGCTTGAGAGTTTGATTGGTGGTACTACAACA- 854 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 734 GACCTAGTAAATGGGTCTTCTTCAAGAAGCTTGAGAGTTTGATTGGTGGTACTACGACAA 793 Query 855 TTCATTGCTTCTTCAAAAGCTTCAGAGAAGGCTCCTATGGGAGGAGCTCTTGGGAATAGC 914 || |||||||||| |||||||| |||||||||||||||||||||||||| | Sbjct 794 TTG-TTGCTTCTTCGAAAGCTTCGGAGAAGGCTCCTATGGGAGGAGCTCT---------C 843 Query 915 CGTTCGAGTATGTTTAAACGGCAAACTAAAGGTAATCAGATTGTGCA-GCAACAACAAGA 973 ||||||| ||||| |||||||||| ||||||| |||||||||||||| | | | Sbjct 844 CGTTCGAATATGTATAAACGGCAAGCTAAAGGAAATCAGATTGTGCAAGGAGGGG-ATTT 902 Query 974 GAAGAGAGGCTCTGATTCGATGCGGTGGCATTTTAGGAAACGTAGTGCTTCTGAGACTGA 1033 ||||||| ||||| |||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 903 GAAGAGAAGCTCTAATTCGATGCGTTGGCATTTTAGGAAACGAAGTGCTTCTGAGACTGA 962 Query 1034 GTCTGAGTCTGATCCTGAACCTGAGGCTTCTCCTGAGGAATCTGCTGAGAGTCTCCCACC 1093 |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 963 GTCTGAGTCTGATCCTGAACCTGAGGCTTCTCCTGAC---TCTGCTGAGAGTCTGCCACC 1019 Query 1094 TTTGCAACCGATTCAACCGCTTTCGTTTCATATGCCAAAGCGGTTGAAGGTGGATAAGAG 1153 ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 1020 GTTGCAACCGCCTCAACCGCTTTCGTTTCATCTGCCTAAGCGGTTGAAGGTGGATAAGAG 1079 Query 1154 TGGAGGTGGAGGGAGTGGAGTTGGAGATGTGGCGAGGGCGATACTTGGATTTACGGAAGC 1213 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 TGGAGATGGAGGGAGTGGAGTTGGAGATGTGGCGAGGGCGATACTTGGATTTACGGAAGC 1139 Query 1214 TTATGAGAAGGCGGAAACTGCTAAGCTTAAGTTAATGGCGGAACTGGAAAAGGAGAGGAT 1273 |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 1140 TTATGAGAAGGCGGAAACGGCTAAGCTTAAGCTAATGGCGGAACTGGAAAAGGAGAGGAT 1199 Query 1274 GAAATTTGCTAAAGAGATGGAGTTGCAGAGAATGCAGTTCTTGAAAACTCAATTGGAGAT 1333 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 GAAATTCGCTAAAGAGATGGAGTTGCAGAGAATGCAGTTCTTGAAAACTCAATTGGAGAT 1259 Query 1334 AACACAGAACAATCAAGAAGAGGAAGAGAGGAGCAGGCAGCGAGGAGAAAGGAGGATCGT 1393 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 AACACAGAACAATCAAGAAGAGGAAGAGAGGAGCAGGCAGCGAGGAGAAAGGAGGATCGC 1319 Query 1394 TGATGATGATGATGATCGCAATGGCAAGAATAACGGCAATGTAAGTAGCTGACAATTGAA 1453 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 TGACGATGATGAT---CGCAATGGCAAGAATAACGGCAATGTAAGTAGCTGACAATTGAA 1376 Query 1454 CACACAAATGTTCCTATGATATTTGCTATGATAAGCTGGATTTTAGGTTTTGAtgttgtt 1513 |||| || ||||||||||||||| ||||||||||||||||||| ||| || ||||||||| Sbjct 1377 CACA-AA-TGTTCCTATGATATT-GCTATGATAAGCTGGATTT-AGGATTCGATGTTGTT 1432 Query 1514 gttgttgttattgttACTGCCTTGTGGGATGTGTAAATGTAGAGAAGTTATGACTCTGAT 1573 ||| | | | |||||||||||||||||||||| | |||||||||||||| Sbjct 1433 GTT------A------C--C-TTGTGGGATGTGTAAATGTAGA-A-GTTATGACTCTGAT 1475 Query 1574 T-ATCAT---CATGTTGTTGTTATTGTTATCCATCT-TCTTGTCTTAAACATGGGCAAAT 1628 | ||||| |||||||||||| ||||| | ||| || ||||| |||||||||||||| Sbjct 1476 TTATCATTATCATGTTGTTGTTGTTGTTGTTTATCCATCGTGTCTGAAACATGGGCAAAT 1535 Query 1629 TAAAAAGCTTTGAACTTG 1646 |||||||||||||||||| Sbjct 1536 TAAAAAGCTTTGAACTTG 1553 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61706196900 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5