BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54060.1
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474535 jgi|Araly1|474535|fgenesh2_kg.1__4489__AT1G54060.1 2004 0.0
> Ahg474535 jgi|Araly1|474535|fgenesh2_kg.1__4489__AT1G54060.1
Length=1553
Score = 2004 bits (1085), Expect = 0.0
Identities = 1470/1638 (90%), Gaps = 97/1638 (6%)
Strand=Plus/Plus
Query 21 AAAAAATGGCCAAAGCATAAATACCTTATAGCGATATTTGAGTATTTACCATAAAACCAT 80
|||||||||| |||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 1 AAAAAATGGCAAAAGCATAAATACCTTATAGCGATATGTCA--ATTTACCATAAAACCAT 58
Query 81 TCGAATACTGTCACGGTTCTAAATTTCTAATATTGTTCTTTTGTTATTAAAGGAAAGAGT 140
||| ||| |||||| | | ||| | | || ||| |||||||||| |||||||
Sbjct 59 ACGAGTAC--TCACGG-T-T--ATTGC---T-TT-TTC----GTTATTAAAGAAAAGAGT 103
Query 141 GAAGGGTGTTTTCGTCATTTAACATATCCATCGGGTCAATAACGGAGATTACCTATCCGG 200
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 104 GAAGGGTGTTTTCGTCATTTCTCATATCCATCGGGTCAATAACGGAGATTACCTATCCGG 163
Query 201 TGACCTTATCCCCTCGCCGGTGAGCGAATCTCAGATCCAAAATTTTGCAAAATCCTCAGA 260
|||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 164 TGACCTTATCCCCTCGCCGGTGAGCGAATCTCAGATCCAAAATTTTGC---A--CT---- 214
Query 261 TCGTCTTACCTTCTCCGAATCGATCGATTTTTCATGGAGGACGACGACGAGATTCAGTCA 320
| || | || | | ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 215 T--TC-T-CCGAAT-C-AATCGGTCGA-CTTTCATGGAGGACGACGACGAGATTCAGTCG 267
Query 321 ATTCCATCTCCGGGAGATTCTTCCCTTTCACCACAAGCTCCTCCTTCTCCGCCGATTTTG 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 ATTCCATCTCCGGGAGATTCTTCCCTTTCACCACAAGCTCCTCCTTCTCCGCCGATTTTG 327
Query 381 CCAACAAACGACGTGACGGTGGCCGTCGTGAAGAAACCACA-ACCG-GGGCTTTCTTCTC 438
|||||||||||||| |||||||||||||||||||||||||| | || | |||||||||
Sbjct 328 CCAACAAACGACGTTACGGTGGCCGTCGTGAAGAAACCACAGA-CGCTAG-TTTCTTCTC 385
Query 439 AATCTCCGTCCATGAACGCTTTAGCGTTAGTGGTTCATACTCCTTCTGTAACCGGTGGTG 498
|||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 386 AATCTCCGTCGAGGAACGCTTTAGCGTTAGTGGTTCATACTCCTTCTGTAACC---GGTG 442
Query 499 GTGGTAGCGG-AA-A-CAGAAACGGACgaggaggaggaggaggaagcggtggtggtggag 555
|||||||||| || | ||||||||||| |||||||||||||||||||||| |
Sbjct 443 GTGGTAGCGGTAATACCAGAAACGGAC---------GAGGAGGAAGCGGTGGTGGTGGCG 493
Query 556 gaggaAGAGATGATTGTTGGAGCGAAGAAGCTACAAAGGTTCTAATCGAAGCTTGGGGAG 615
|||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 494 GAGGAAGAGACGATTGTTGGAGCGAAGAAGCAACCAAGGTTCTAATCGACGCTTGGGGAG 553
Query 616 ATCGATTCTCTGAACCAGGTAAAGGAACTTTGAAGCAACAACATTGGAAAGAAGTAGCTG 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 ATCGATTCTCTGAACCAGGTAAAGGAACTTTGAAGCAACAACATTGGAAAGAAGTAGCTG 613
Query 676 AGATTGTGAACAAGAGTCGTCAATGCAAATACCCTAAAACTGATATTCAGTGTAAGAACA 735
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 614 AGATTGTGAACAAGAGTCGTCAATGCAAATACCCTAAAACTGATATACAGTGTAAGAACA 673
Query 736 GAATTGATACGGTGAAGAAGAAGTATAAGCAAGAGAAAGCTAAGATTGCTTCTGGTGATG 795
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 674 GGATTGATACGGTGAAGAAGAAGTATAAGCAAGAGAAAGCCAAGATTGCTTCTGGTGATG 733
Query 796 GACCTAGTAAATGGGTTTTCTTCAAGAAGCTTGAGAGTTTGATTGGTGGTACTACAACA- 854
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 734 GACCTAGTAAATGGGTCTTCTTCAAGAAGCTTGAGAGTTTGATTGGTGGTACTACGACAA 793
Query 855 TTCATTGCTTCTTCAAAAGCTTCAGAGAAGGCTCCTATGGGAGGAGCTCTTGGGAATAGC 914
|| |||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 794 TTG-TTGCTTCTTCGAAAGCTTCGGAGAAGGCTCCTATGGGAGGAGCTCT---------C 843
Query 915 CGTTCGAGTATGTTTAAACGGCAAACTAAAGGTAATCAGATTGTGCA-GCAACAACAAGA 973
||||||| ||||| |||||||||| ||||||| |||||||||||||| | | |
Sbjct 844 CGTTCGAATATGTATAAACGGCAAGCTAAAGGAAATCAGATTGTGCAAGGAGGGG-ATTT 902
Query 974 GAAGAGAGGCTCTGATTCGATGCGGTGGCATTTTAGGAAACGTAGTGCTTCTGAGACTGA 1033
||||||| ||||| |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 903 GAAGAGAAGCTCTAATTCGATGCGTTGGCATTTTAGGAAACGAAGTGCTTCTGAGACTGA 962
Query 1034 GTCTGAGTCTGATCCTGAACCTGAGGCTTCTCCTGAGGAATCTGCTGAGAGTCTCCCACC 1093
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 963 GTCTGAGTCTGATCCTGAACCTGAGGCTTCTCCTGAC---TCTGCTGAGAGTCTGCCACC 1019
Query 1094 TTTGCAACCGATTCAACCGCTTTCGTTTCATATGCCAAAGCGGTTGAAGGTGGATAAGAG 1153
||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1020 GTTGCAACCGCCTCAACCGCTTTCGTTTCATCTGCCTAAGCGGTTGAAGGTGGATAAGAG 1079
Query 1154 TGGAGGTGGAGGGAGTGGAGTTGGAGATGTGGCGAGGGCGATACTTGGATTTACGGAAGC 1213
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGGAGATGGAGGGAGTGGAGTTGGAGATGTGGCGAGGGCGATACTTGGATTTACGGAAGC 1139
Query 1214 TTATGAGAAGGCGGAAACTGCTAAGCTTAAGTTAATGGCGGAACTGGAAAAGGAGAGGAT 1273
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1140 TTATGAGAAGGCGGAAACGGCTAAGCTTAAGCTAATGGCGGAACTGGAAAAGGAGAGGAT 1199
Query 1274 GAAATTTGCTAAAGAGATGGAGTTGCAGAGAATGCAGTTCTTGAAAACTCAATTGGAGAT 1333
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GAAATTCGCTAAAGAGATGGAGTTGCAGAGAATGCAGTTCTTGAAAACTCAATTGGAGAT 1259
Query 1334 AACACAGAACAATCAAGAAGAGGAAGAGAGGAGCAGGCAGCGAGGAGAAAGGAGGATCGT 1393
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AACACAGAACAATCAAGAAGAGGAAGAGAGGAGCAGGCAGCGAGGAGAAAGGAGGATCGC 1319
Query 1394 TGATGATGATGATGATCGCAATGGCAAGAATAACGGCAATGTAAGTAGCTGACAATTGAA 1453
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGACGATGATGAT---CGCAATGGCAAGAATAACGGCAATGTAAGTAGCTGACAATTGAA 1376
Query 1454 CACACAAATGTTCCTATGATATTTGCTATGATAAGCTGGATTTTAGGTTTTGAtgttgtt 1513
|||| || ||||||||||||||| ||||||||||||||||||| ||| || |||||||||
Sbjct 1377 CACA-AA-TGTTCCTATGATATT-GCTATGATAAGCTGGATTT-AGGATTCGATGTTGTT 1432
Query 1514 gttgttgttattgttACTGCCTTGTGGGATGTGTAAATGTAGAGAAGTTATGACTCTGAT 1573
||| | | | |||||||||||||||||||||| | ||||||||||||||
Sbjct 1433 GTT------A------C--C-TTGTGGGATGTGTAAATGTAGA-A-GTTATGACTCTGAT 1475
Query 1574 T-ATCAT---CATGTTGTTGTTATTGTTATCCATCT-TCTTGTCTTAAACATGGGCAAAT 1628
| ||||| |||||||||||| ||||| | ||| || ||||| ||||||||||||||
Sbjct 1476 TTATCATTATCATGTTGTTGTTGTTGTTGTTTATCCATCGTGTCTGAAACATGGGCAAAT 1535
Query 1629 TAAAAAGCTTTGAACTTG 1646
||||||||||||||||||
Sbjct 1536 TAAAAAGCTTTGAACTTG 1553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61706196900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5