BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G54070.1

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg914595 jgi|Araly1|914595|Al_scaffold_0001_4849                    549    5e-156


> Ahg914595 jgi|Araly1|914595|Al_scaffold_0001_4849
Length=384

 Score =  549 bits (297),  Expect = 5e-156
 Identities = 358/385 (93%), Gaps = 14/385 (4%)
 Strand=Plus/Plus

Query  45   ATGGGGTTCCTACACAAGCTGTGGGATGAAACGGTGGCCGGACCGACGCCGGACAATGGT  104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGGTTCCTACACAAGCTGTGGGATGAAACGGTGGCCGGACCGACGCCGGACAATGGT  60

Query  105  CTCGGGAAATTGAGAAAGCACGATTCATTATCCACCGTCCGATCTTCTCCTCCTTCTCTC  164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTCGGGAAATTGAGAAAGCACGATTCATTATCCACCGTCCGATCTTCTCCTCCTTCTCTC  120

Query  165  TCAAGCGACCAAGTCACCAGAAGCATCATGGTTACCAAGGGGAATAACAATGTTCGTGGT  224
            |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  121  TCAAGCGATCAAGTCACCAGAAGCATAATGGTTACCAAGGGGAATAACAATGTCCGTGGT  180

Query  225  CTCCGTAAATTGAAAATGGATCCGGAT--T---C----T-C-C-AACCTGT-TCAAGCAG  271
            |||||||||||||||||||||||||||  |   |    | | | ||| ||  |||| |||
Sbjct  181  CTCCGTAAATTGAAAATGGATCCGGATCGTGTTCCGGATTCTCCAAC-TGGGTCAATCAG  239

Query  272  CAACCCTGGGACACCTTTAACCCCTGGGACACCATGCTATGCTTTGGGACCATTCACTGC  331
            |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  240  CAACCCTGGGACGCCTTTAACCCCTGGGACACCATGCTATGATTTGGGACCATTCACTGC  299

Query  332  CGGCAAAATCCCTTCCTCTGGCGAAGACGATGCAGCAAGTCTAACTACTTATGAATGGAT  391
            ||| |||||||||||||| |||||||||||||| |||||||| || ||||||||||||||
Sbjct  300  CGGTAAAATCCCTTCCTCCGGCGAAGACGATGCTGCAAGTCTCACCACTTATGAATGGAT  359

Query  392  TGTGATAAACGCGTTGGACCGTTGA  416
            |||||| ||||||||||||||||||
Sbjct  360  TGTGATTAACGCGTTGGACCGTTGA  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14956990888


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5