BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54080.2
Length=1720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474538 jgi|Araly1|474538|fgenesh2_kg.1__4492__AT1G54080.1 2549 0.0
Ahg478823 jgi|Araly1|478823|fgenesh2_kg.3__1524__AT3G14100.1 1218 0.0
> Ahg474538 jgi|Araly1|474538|fgenesh2_kg.1__4492__AT1G54080.1
Length=1835
Score = 2549 bits (1380), Expect = 0.0
Identities = 1617/1722 (94%), Gaps = 54/1722 (3%)
Strand=Plus/Plus
Query 1 ACTTGATTTTGAACCCTAGCTTAAGGGGAATTTTCTCGGG-AAACAAAAGAGATATTTTT 59
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct 163 ACTTGATTTTGAACCCTAGCTTAAGGGGAATTTTCTCGGGAAAAC-AAAGAGATA-TTTT 220
Query 60 ATCGCAGTGAGAAAGAAA-CACAAAAAATGCAGAATCAAAGGCTTATTAAGCAGcaacaa 118
|||||||||||||||||| || ||||||||||||||||||||| || | |||| |||
Sbjct 221 ATCGCAGTGAGAAAGAAAGCA-AAAAAATGCAGAATCAAAGGC---TT-A--AGCATCAA 273
Query 119 caacaacaacaacagcaacatcaacaagctatgattcaacaagctatgatgcaacaacaT 178
||||| |||| | | | | | |||||||||||||||||||||||||||||||||||||||
Sbjct 274 CAACATCAAC-A-A-C-A-A-CAACAAGCTATGATTCAACAAGCTATGATGCAACAACAT 327
Query 179 CCTTCTCTTTATCATCCTGGTGTTATGGCTCCTCCTCAGATGGAGCCTTTACCAAGTGGA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 CCTTCTCTTTATCATCCTGGTGTTATGGCTCCTCCTCAGATGGAGCCTTTACCAAGTGGA 387
Query 239 AACCTTCCTCCTGGTTTTGATCCAACTACTTGCCGTAGTGTGTATGCTGGAAACATTCAT 298
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 388 AACCTTCCTCCTGGTTTTGATCCCACTACTTGCCGTAGTGTGTATGCTGGCAACATTCAT 447
Query 299 ACGCAGGTCACAGAGATTCTTCTTCAAGAGATTTTTGCAAGTACTGGTCCTATTGAAAGC 358
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 448 ACGCAAGTCACAGAGATTCTTCTTCAAGAGATTTTTGCAAGTACTGGCCCTATTGAAAGC 507
Query 359 TGTAAACTCATCAGAAAGGATAAGTCATCATATGGATTTGTTCACTACTTTGATCGAAGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 TGTAAACTCATCAGAAAGGATAAGTCATCATATGGATTTGTTCACTACTTTGATCGAAGA 567
Query 419 TGTGCTAGTATGGCTATAATGACTCTTAACGGAAGGCATATATTTGGACAGCCTATGAAA 478
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 568 TGTGCTAGTATGGCTATAATGACTCTTAATGGAAGGCATATATTTGGACAGCCTATGAAA 627
Query 479 GTTAATTGGGCGTATGCAACTGGTCAAAGGGAAGATACATCAAGTCATTTCAACATTTTT 538
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 GTTAATTGGGCCTATGCAACTGGTCAAAGGGAAGATACATCAAGTCATTTCAACATTTTT 687
Query 539 GTTGGAGATCTTAGTCCAGAGGTTACTGATGCAGCATTGTTTGATAGCTTTTCTGCTTTT 598
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 688 GTTGGAGATCTCAGTCCAGAGGTTACTGATGCAGCATTGTTTGATAGCTTTTCTGCCTTT 747
Query 599 AACAGCTGCTCTTCTTATTATAGGGACGCAAGAGTAATGTGGGACCAGAAAACTGGACGC 658
|| ||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 748 AATAGCTG--C-TC---------GGACGCAAGAGTAATGTGGGACCAGAAAACTGGACGC 795
Query 659 TCAAGAGGCTTTGGTTTTGTTTCCTTCCGTAATCAGCAGGATGCTCAAACTGCCATAAAT 718
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 TCAAGAGGCTTTGGGTTTGTTTCCTTCCGTAATCAGCAGGATGCTCAAACTGCCATAAAT 855
Query 719 GAGATGAATGGTAAATGGGTAAGTAGCAGACAGATCAGATGCAACTGGGCGACAAAAGGT 778
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GAGATGAATGGTAAGTGGTTAAGTAGCAGACAGATCAGATGCAACTGGGCGACAAAAGGT 915
Query 779 GCTACTTTTGGCGAGGACAAACATAGCTCTGATGGAAAAAGTGTTGTAGAACTTACTAAC 838
|||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||
Sbjct 916 GCTACTTTTGGCGAGGACAAGCATAGCTCTGACGGAAAAAGTGTTGTGGAACTTACAAAC 975
Query 839 GGATCTTCAGAGGATGGTAGAGAGCTGTCAAATGAAGATGCCCCTGAAAACAATCCTCAA 898
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 976 GGCTCTTCAGAGGATGGTAGAGAGCTGTCAAACGAAGATGCCCCTGAAAACAATCCTCAA 1035
Query 899 TTTACAACTGTCTATGTAGGAAATCTCTCTCCAGAAGTAACTCAGCTTGATCTACACCGT 958
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1036 TATACAACTGTCTATGTAGGAAACCTCTCTCCAGAAGTAACTCAGCTTGATCTACACCGT 1095
Query 959 CTATTCTATACCCTTGGTGCTGGAGTGATCGAAGAGGTCCGTGTCCAGCGAGACAAAGGG 1018
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1096 CTGTTCTATACCCTTGGTGCTGGAGCGATCGAAGAGGTCCGTGTCCAGCGAGACAAAGGG 1155
Query 1019 TTTGGTTTTGTGAGATATAACACTCATGACGAGGCTGCTCTTGCTATTCAGATGGGCAAC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 TTTGGTTTTGTGAGATATAACACTCATGACGAGGCTGCTCTTGCTATTCAGATGGGCAAC 1215
Query 1079 GCTCAGCCTTTCCTCTTTAGCAGACAGATAAGGTGTTCCTGGGGAAACAAACCAACTCCA 1138
|||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1216 GCTCAGCCTTACCTCTTTAGCAGACAGATAAAGTGTTCATGGGGAAACAAACCAACTCCA 1275
Query 1139 TCAGGCACAGCCTCAAACCCACTTCCCCCACCAGCCCCGG-CATCAGTCCCTTCTCTGTC 1197
|||||||||||||||||||||||||| |||||||||||| | ||||||||| |||||||
Sbjct 1276 TCAGGCACAGCCTCAAACCCACTTCCTCCACCAGCCCCGATC-TCAGTCCCTGCTCTGTC 1334
Query 1198 TGCAATGGACCTCTTAGCCTACGAGAGGCAACTGGCTCTAGCCAAGATGCATCCTCAGGC 1257
|||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||
Sbjct 1335 TGCAATGGACCTCTTAGCATATGAGAGGCAACTGACTCTAGCCAAGATGCATCCTCAGGC 1394
Query 1258 TCAACATTCTCTGAGGCAAGCAGGTCTTGGAGTCAATGTTGCTGGAGGAACTGCAGCTAT 1317
|||||||||||| ||||||||||| || | || | ||||| |||||||||
Sbjct 1395 TCAACATTCTCTAAGGCAAGCAGG------AG-C--TG--G----AGGAAGTGCAGCTAT 1439
Query 1318 GTATGATGGTGGCTATCAGAATGTAGCTGCGGCCCATCAGCAGCTCATGTACTATCAGTA 1377
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GTACGATGGTGGCTTTCAGAATGTAGCTGCGGCCCATCAGCAGCTCATGTACTATCAGTA 1499
Query 1378 ATAAACCCTCTTCACTGGCTCTGAGATACcttttt-ctgtttctttctttttcttcttct 1436
|||||| |||||||||||||||||||||| ||||| || ||||||||||| | |||||||
Sbjct 1500 ATAAACTCTCTTCACTGGCTCTGAGATACTTTTTTTCT-TTTCTTTCTTTCT-TTCTTCT 1557
Query 1437 taattttataactttcttgcttttt-ctAGACCTTCCTTGTTCAAGAGTCTTTATGTATG 1495
||||||||| |||||||| |||||| ||||||||| |||||||||||||||||||||
Sbjct 1558 TAATTTTATCACTTTCTTACTTTTTTCTAGACCTT----GTTCAAGAGTCTTTATGTATG 1613
Query 1496 TGTCTCTTTCATTTAAAGCCGTTGGTTTTATTTATGTATGCAGAGCTTTATGCTCAGTTT 1555
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1614 TGTCTCTTTCATTTAAAGCTGTTGGTTTTATTTATGTATGCAGAGCATTATGCTCAGTTT 1673
Query 1556 GTAACCTATAGGTCTTACTTGGATTGTAAGCCAAGCAATAAGACAACATCAAATAAAAGG 1615
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1674 GTAACCTATAGGTCTTACTTGGATTGTAAGCCAAGCAATAAGATAACATCAAATAAAAGG 1733
Query 1616 GGATTTGGTTTTCTGGGGTTAATGTTGTTTGTGGTTCTGTAATGATAGGTTTGAAACAAA 1675
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
Sbjct 1734 GGATTTGGTTTTCTGGGGTTTATGTTGTTTGTGGTTCTGTAATGATAGATTTGAAACATA 1793
Query 1676 GTAATTTGTCTTTTATAAAAGTTTTATAGTTTCATTTCTCAT 1717
|||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1794 GTAATTTGTCGGTTATAAAAGTTGTATAGTTTCATTTCTCAT 1835
> Ahg478823 jgi|Araly1|478823|fgenesh2_kg.3__1524__AT3G14100.1
Length=1605
Score = 1218 bits (659), Expect = 0.0
Identities = 1104/1310 (84%), Gaps = 66/1310 (5%)
Strand=Plus/Plus
Query 111 AGcaacaacaacaacaacaacagcaacatcaacaagctatgat---tcaacaagctatga 167
||||||| || ||||||||||| ||||| ||||||||| |||| ||||||||| |||
Sbjct 113 AGCAACATCAGCAACAACAACAACAACAACAACAAGCTTTGATGCAGCAACAAGCTCTGA 172
Query 168 tgcaacaacaTCCTTCTCTTTATCATCCTGGTGTTATGGCTCCTCCTCAGATGGAGCCTT 227
|||| ||||| | |||||||| |||||||||||| |||||||||||||| | ||||||
Sbjct 173 TGCATCAACA--C-TCTCTTTACCATCCTGGTGTTTTGGCTCCTCCTCAGTTAGAGCCTG 229
Query 228 TACCAAGTGGAAACCTTCCTCCTGGTTTTGATCCAACTACTTGCCGTAGTGTGTATGCTG 287
| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||| ||
Sbjct 230 TCCCAAGTGGAAACCTTCCTCCTGGTTTTGATCCCAGTACTTGCCGTAGCGTGTATGTTG 289
Query 288 GAAACATTCATACGCAGGTCACAGAGATTCTTCTTCAAGAGATTTTTGCAAGTACTGGTC 347
||||||||||||| |||||||||||| ||| ||||| ||||||||| |||| ||||| |
Sbjct 290 GAAACATTCATACACAGGTCACAGAGCCTCTGCTTCAGGAGATTTTTACAAGCACTGGCC 349
Query 348 CTATTGAAAGCTGTAAACTCATCAGAAAGGATAAGTCATCATATGGATTTGTTCACTACT 407
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 CTGTTGAAAGCAGTAAACTCATCAGAAAGGATAAGTCATCATATGGATTTGTTCACTACT 409
Query 408 TTGATCGAAGATGTGCTAG-TATGGCTATAATGACTCTTAACGGAAGGCATATATTTGGA 466
|||| ||||||| |||| | | |||||||| || |||| |||||||||||| | ||||||
Sbjct 410 TTGACCGAAGATCTGCT-GCTCTGGCTATACTGTCTCTGAACGGAAGGCATCTGTTTGGA 468
Query 467 CAGCCTATGAAAGTTAATTGGGCGTATGCAACTGGTCAAAGGGAAGATACATCAAGTCAT 526
|||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 469 CAGCCTATCAAAGTCAATTGGGCGTATGCCACTGGTCAGAGGGAAGATACATCAAGTCAT 528
Query 527 TTCAACATTTTTGTTGGAGATCTTAGTCCAGAGGTTACTGATGCAG-CATTGTTTGATAG 585
||||||||||||||||||||||| || || ||||| ||||| || | |||| | | | ||
Sbjct 529 TTCAACATTTTTGTTGGAGATCTCAGCCCGGAGGTCACTGACGC-GACATTATATCAAAG 587
Query 586 CTTTTCTG-CTTTTAACAGCTGCTCTTCTTATTATAGGGACGCAAGAGTAATGTGGGACC 644
|||| ||| ||||| ||| | | ||| ||| || ||||| ||||||||||
Sbjct 588 CTTTGCTGTCTTTT-CCAG-T--TGTTC---------GGATGCGAGAGTTATGTGGGACC 634
Query 645 AGAAAACTGGACGCTCAAGAGGCTTTGGTTTTGTTTCCTTCCGTAATCAGCAGGATGCTC 704
| |||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct 635 AAAAAACTGGGCGCTCAAGAGGCTTTGGGTTTGTTTCTTTCCGCAATCAACAGGATGCTC 694
Query 705 AAACTGCCATAAATGAGATGAATGGTAAATGGGTAAGTAGCAGACAGATCAGATGCAACT 764
|||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 695 AAACTGCCATTAATGAGATGAATGGTAAGTGGTTAAGTAGCAGACAGATCAGATGCAACT 754
Query 765 GGGCGACAAAAGGTGCTACTTTTGGCGAGGACAAACAT-AGCTCTGATGGAAAAAGTGTT 823
|||| || || || ||||||| ||| || || || | | || ||||||||||||||||||
Sbjct 755 GGGCCACGAAGGGCGCTACTTCTGGTGATGATAAGC-TCAGTTCTGATGGAAAAAGTGTT 813
Query 824 GTAGAACTTACTAAC-GGATCTTCAGAGGATGGTAGAGAG-C-TGTCAAATGAAGATGCC 880
||||||||||| ||| || || ||||||||||||| |||| | | | |||||| || ||
Sbjct 814 GTAGAACTTAC-AACTGGGTCATCAGAGGATGGTAAAGAGACAT-T-AAATGAGGAAGCA 870
Query 881 CCTGAAAACAATCCTCAATTTACAACTGTCTATGTAGGAAATCTCT-CTCCAGAAGTAAC 939
|||||||||||| |||| ||||| ||||| ||||| ||||| || | ||||||| |||||
Sbjct 871 CCTGAAAACAATTCTCAGTTTACCACTGTTTATGTGGGAAACCT-TGCTCCAGAGGTAAC 929
Query 940 TCAGCTTGATCTACACCGTCTA-TTCTATACCCTTGGTGCTGGAGTGATCGAAGAGGTCC 998
|||||||||||||||||| ||| ||| || | ||||| |||||||| || ||||| ||||
Sbjct 930 TCAGCTTGATCTACACCG-CTACTTCCATGCTCTTGGCGCTGGAGTTATTGAAGAAGTCC 988
Query 999 GTGTCCAGCGAGACAAAGGGTTTGGTTTTGTGAGATATAACACTCATGAC-GAGGCTGCT 1057
||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct 989 GTGTCCAACGAGACAAAGGCTTTGGTTTTGTGAGATATAACACTCATC-CTGAGGCTGCT 1047
Query 1058 CTTGCTATTCAGATGGGCAACGCTCAGCCTTTCCTCTTTAGCAGACAGAT-AAGGTGTTC 1116
||||||||||||||||| ||| ||||||||| ||| |||| ||||||||| ||| || ||
Sbjct 1048 CTTGCTATTCAGATGGGTAACACTCAGCCTTACCTGTTTAACAGACAGATTAAG-TGCTC 1106
Query 1117 CTGGGGAAACAAACCAACTCCATCAGGCACAGCCTCAAACCCACTTCCCCCACCAGCCCC 1176
||||||||||| ||||||||| |||| |||||||||||||||||||||||||| |||||
Sbjct 1107 ATGGGGAAACAAGCCAACTCCACCAGGTACAGCCTCAAACCCACTTCCCCCACCTGCCCC 1166
Query 1177 GGCATCAGTCCCTTCTCTGTCTGCAA-TGGACCTCTTAGCCTACGAGAGGCAACTGGCTC 1235
||| |||| ||| |||||||||| || | ||||||||||| ||||||||| |||| |
Sbjct 1167 AGCACCAGTTCCTGGTCTGTCTGCAGCTG-ATCTCTTAGCCTATGAGAGGCAATTGGCAC 1225
Query 1236 TA-GC-------C-A-----A--G----A-TGCATCCTCAGGCTCAACATTCTCTGAGGC 1274
|| || | | | | | ||||||| |||| ||| || |||| ||||
Sbjct 1226 TAAGCAAGATGGCTAGTGTGAATGCGTTAATGCATCCACAGGGTCAGCACCCTCTAAGGC 1285
Query 1275 AAGCAGGTCTTGGAGTCAATGTTGCTGGAGGAACTGCAGCTATGTATGATGGTGGCTATC 1334
|||| | || |||| | |||| ||||||| |||||||| ||||| || ||||||| ||
Sbjct 1286 AAGCTGCTCATGGAATAAATGCCGCTGGAGCTACTGCAGCCATGTACGACGGTGGCTTTC 1345
Query 1335 AGAATGTAGCTGCGGCCCATCAGCAGCTCATGTACTATCAGTAATAAACC 1384
|||||||||| || || | |||||||| |||||||||||||||||||||
Sbjct 1346 AGAATGTAGCCGCCGC--A-CAGCAGCTTATGTACTATCAGTAATAAACC 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64524875030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5