BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54090.1
Length=2334
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474539 jgi|Araly1|474539|fgenesh2_kg.1__4493__AT1G54090.1 3103 0.0
Ahg938064 jgi|Araly1|938064|scaffold_502255.1 193 6e-48
> Ahg474539 jgi|Araly1|474539|fgenesh2_kg.1__4493__AT1G54090.1
Length=2259
Score = 3103 bits (1680), Expect = 0.0
Identities = 2102/2290 (92%), Gaps = 91/2290 (4%)
Strand=Plus/Plus
Query 77 CTTCACCTAAATCTCATTTCAAAGGAAC-AA-ACAAAAAGAAAACACCTAAATCGATCTG 134
|||||||||||||||||||||||||| | || ||||||| ||||||||||||||||||||
Sbjct 29 CTTCACCTAAATCTCATTTCAAAGGACCAAACACAAAAAAAAAACACCTAAATCGATCTG 88
Query 135 TGAAGTCAAAACACTTTCCAGTTTCAGA-TTCTGATTATGGCAACACCGGAG-A-C-TCG 190
||||||| ||||||||||||||||| || || ||| |||||||||||||||| | | ||
Sbjct 89 TGAAGTC-AAACACTTTCCAGTTTCCGATTTTTGAATATGGCAACACCGGAGAATCATCA 147
Query 191 TGGCG-TTGATTCCGATTTAGAGACAGCGGAGAAGATAATACTCCGGTGGGATTCAACAA 249
||||| | | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 148 TGGCGATAG-TTCCGATTTAGAGACAGCGGAGAAGATAATACTCCGTTGGGATTCAACAG 206
Query 250 CATCTGAAGAAGCT-AA-AG-AGAATCTGATTTTCCAAAGCGGTGGTGATCGAGAAGAAG 306
|||||||||||||| || || |||||||||||||||||||||||||||||||||| ||||
Sbjct 207 CATCTGAAGAAGCTAAAGAGAAGAATCTGATTTTCCAAAGCGGTGGTGATCGAGATGAAG 266
Query 307 TAGATCGGTACTTGAAAGCTGTAGATGAAGTTCAAAGACACATCTCTTCAATCTCAATCT 366
||||||| ||||||||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct 267 TAGATCGCTACTTGAAAGCCGTCGATGAACTTCAAAGACACATCTCTTCAATCTCAATCT 326
Query 367 CCGATGAAGTC--A--A---AG--CAACGATTCAAATCGCCATGGCTAGACTCGAGGACG 417
||||||||||| | | || ||||||||||||||||||||||||| || || ||||
Sbjct 327 CCGATGAAGTCAAAGCAGCTAGCTCAACGATTCAAATCGCCATGGCTAGGCTTGAAGACG 386
Query 418 AGCTAAGAAATATCTTAATCTCTCAGACTTCTACTTTCGAACCTGAttctcttcttctcg 477
|| | ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 387 AGTTCAGAAACATCTTAATCTCACAGACTTCTACTTTCGAACCTGATTCTCTTCTTCTCG 446
Query 478 attcatcgttatcttcttcctctttcgcttcttcttctcgTACGGAGCTTGAAGATGACA 537
||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
Sbjct 447 ATTCATCGTTATCTTCTTCCTCTTTCGCTTCTTCTTCGCATACCGAGCTTGAAGATG--A 504
Query 538 CTTGCGATGACGGTAACGAAGAAGAAGAGCAACAAC-A--AGTGGATCTGGTTTTACCAG 594
|| | | || || |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 505 --TG-G-TAAC-GT--CGAAGAAGAAGAGCAACAACAACTAGTGGATCTGGTTTTACCAG 557
Query 595 ATG-GTTCCGGTTCAGATTCCGGTTCGAGACGGTTATCGAGGAGTAGGAGAAGCAATAGC 653
||| | ||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 558 ATGAG-TCCGGTTCAGATTCCGGTTCGAGACGGTTATCGAGGAGTAGAAGGAGTAATAGC 616
Query 654 AAATCCACAAGCAGTATACGAGAGATCGATCTTGTAACACCGGAAGCTGTTTCTGATCTG 713
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 617 AAATCCACAAGCAGTATACGAGAGATCGATCTTGTATCGCCGGAAGCTGTTTCTGATCTG 676
Query 714 AGATCGATAGCTCAGAGGATGATCGGAGCTGGTTACTCTCGTGAATGTGTTCAGGTATAC 773
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 AGATCGATTGCTCAGAGAATGATCGGAGCTGGTTACTCTCGTGAATGTGTTCAGGTATAC 736
Query 774 GGAAACGTGAGAAAATCCGCCATGGAAATGATTTTTAAGCAGCTAGGGATTGTGAAACTA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 737 GGAAACGTGAGAAAATCCGCCATGGAAATGATTTTTAAGCAGCTAGGGATTGTGAAATTA 796
Query 834 GGGATTGGTGATGTGCAGAGACTTGACTGGGAAGCTGTAGAAGTGAAGATCAGAAGATGG 893
|||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 797 GGGATTGGAGATGTGCAGAGGCTTGATTGGGAAGCTGTGGAAGTGAAGATCAGAAGATGG 856
Query 894 ATCCGTGCTGCGAAGGTTTGCGTTAGAGTTGTTTTCGCTAGCGAGAAGAGACTCTGTGAG 953
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 ATCCGTGCGGCGAAGGTTTGCGTTAGAGTTGTTTTCGCTAGCGAGAAGAGACTCTGTGAA 916
Query 954 CAGATATTTGAAGGAACCATGGAAGAGACTTGTTTCATGGAGATTGTTAAAACCTCTGCT 1013
|| |||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 917 CAAATATTTGAAGGAGCCATGGAAGAGACATGTTTCATGGAGATTGTTAAAAGCTCTGCT 976
Query 1014 TTGCAGCTTTTTAATTTCCCTGAAGCTATAAGCATTAGTAGAAGATCACCTGAGAAACTA 1073
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 977 TTGCAGCTTTTCAATTTCCCTGAAGCTATAAGTATTAGTAGAAGATCACCTGAGAAACTA 1036
Query 1074 TTCAAGATTCTTGATTTACATGATGCTATAACAGATTTGTTACCTGATATGGAAGAGATT 1133
||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||
Sbjct 1037 TTCAAGATTCTTGATTTACATGATGCTTTAACTGATTTGTTGCCTGATATGGAAGAGATT 1096
Query 1134 TTCGATTCGAGTTCATCGGAGTCGATTCTTGTTCAAGCTACAGAGATTCAATCAAGATTA 1193
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1097 TTCGATTCGAGTTCATCGGAATCGATTCTTGTTCAAGCTACAGAGATTCAATCAAGATTA 1156
Query 1194 GCTGAAGCAGCAAGAGGGATACTTACCGAGTTTGAGAATGCGGTGTTTCGCGAACCTTCG 1253
||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||| |||
Sbjct 1157 GCTGAAGCAGCAAGAGGGATACTCACTGAGTTTGAGAATGCGGTTTTTCGTGAACCATCG 1216
Query 1254 GTTGTTCCTGTCCCTGGAGGAACTATACATCCATTGACAAGGTATGTGATGAATTACCTC 1313
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1217 GTTGTTCCTGTCCCTGGAGGAACTATACATCCTTTGACAAGGTATGTGATGAATTACCTC 1276
Query 1314 AACTTGATCTCTGACTATAGGGAAACGTTGATTGATCTCGTCATGACGAAACCATGTCGG 1373
||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||
Sbjct 1277 AACTTGATCTCTGACTATAAGGAAACGTTGATTGATCTCATTATGACGAAACCATGTCGG 1336
Query 1374 GGTTTGAAATGTACCAATGATCGAAACGATCCGGATATGGATATCTCTGAGCTTGAAGGA 1433
|||||| ||||||||||||||| |||| |||| ||||||||||||||| |||||||||||
Sbjct 1337 GGTTTGCAATGTACCAATGATCCAAACAATCCCGATATGGATATCTCTCAGCTTGAAGGA 1396
Query 1434 ATATCTCCGTTAGCTTTGCATATGATATGGACAATGGTGATGCTACAATTCAATCTAGAA 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 ATATCTCCGTTAGCTTTGCATATGATATGGACAATGGTGATGCTACAATTCAATCTAGAA 1456
Query 1494 GAGAAGTCTTTGCATTACAGGGACGAACCTTTATCTCACATCTTCGTCATGAACAATGTC 1553
||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1457 GAGAAGTCTTTGCATTACAAAGATGAACCTTTATCTCACATCTTCGTTATGAACAATGTC 1516
Query 1554 CATTACATAGTTCAGAAGGTCAAAAGCTCTCCGGAGCTAATGGAGTTGATAGGAGACAAG 1613
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1517 CATTACATAGTTCAGAAGGTCAAAAGCTCGCCGGAGCTAATGGAGTTGATTGGAGACAAG 1576
Query 1614 TATTTAAGGAAGCTTACCGGGATATTTAGACAAGCAGCTACCAAGTATCAGAGAGCTACA 1673
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1577 TATTTAAGAAAGCTTACCGGGATATTTAGACAGGCAGCCACCAAGTATCAGAGAGCTACA 1636
Query 1674 TGGGTCAGGGTGTTGAATAGCTTGAGAGATGAAGGATTACATGTGAGCGGAAGCTTCTCT 1733
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1637 TGGGTTAGAGTGTTGAATAGCTTGAGAGATGAAGGATTACATGTGAGCGGAAGCTTCTCT 1696
Query 1734 TCCGGTGTATCGAAGAGTGCTTTAAGAGAGAGGTTTAAAGCTTTCAATACAATGTTTGAA 1793
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697 TCCGGTGTATCAAAGAGTGCTTTAAGAGAGAGGTTTAAAGCTTTCAATACAATGTTTGAA 1756
Query 1794 GAGGTTCACAGGATTCAATCGACATGGTCGGTTCCGGATACTCAGCTTAGAGAAGAACTC 1853
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1757 GAGGTTCACAGGATTCAATCGACATGGTCGGTTCCAGATACTCAGCTTAGAGAAGAACTG 1816
Query 1854 AGGATATCTCTATCGGAGCATCTTATCCCGGCTTATAGATCCTTTCTTGGAAGATTCAGG 1913
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1817 AGGATATCTCTATCGGAACATCTTATCCCGGCTTATAGATCCTTTCTTGGAAGATTCAGG 1876
Query 1914 GGACATATAGAGAGCGGAAGACATCCCGAAAACTACTTGAAATACTCTGTTGAAAATCTT 1973
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1877 GGACATATAGAGAGCGGAAGACATCCAGAAAACTACTTGAAATACTCTGTTGACAATCTT 1936
Query 1974 GAAACCGCAGTGTTGGATTTCTTCGAAGGATATACCACAGCCCCACATTTGAGACGGTCT 2033
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1937 GAAACCGCTGTGTTGGATTTCTTCGAAGGATATACCACAGCTCCACATTTGAGACGGTCT 1996
Query 2034 CAGTGAAAGAAGAAGATTGAAAACCCCATAAAACTTTCCTTTTCGGTTTGCCCACATTAG 2093
|||||| | ||||| ||||| |||||||||| ||||||||||
Sbjct 1997 CAGTGA-----------------C---ATAAAGCTTTCGTTTTCGGTTTACCCACATTAG 2036
Query 2094 AATTAACCATTTATATCATTCTTTGAATTCATTCCATTTTCATGTGGTGGCAGTGTTGAG 2153
||||||| || ||||||||||||||||||| ||||||||| |||||| | | | | | |
Sbjct 2037 AATTAACGATATATATCATTCTTTGAATTCTTTCCATTTTAATGTGG-G-CT-TCT-G-G 2091
Query 2154 ATTGTTTTCCAGGCTTCTGGTGAATAGTCTCTCACTCTTTTGTACTTGTAAGCATATttg 2213
| | | || |||| | || | | | || |||||||||||||||||||
Sbjct 2092 -T-GAAT---AGTCTTC-----A-----CT-T-A-T-TT--GTACTTGTAAGCATATTTG 2130
Query 2214 ttgtgtgttgtttgtttgttACCAAATTTC-ATTACTCCATTGTTGATATAAATGTTTG- 2271
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 2131 TTGTGTGTTGTTTGTTTGTTACCAAATTTCGAT-ACTCCATTGTTGATATAAATGTTTGA 2189
Query 2272 T-ATTT-T-----GTGACTTTTGTTGTACTAGTTCCTTCATAAACCCATCTAAATGCAAT 2324
| |||| | |||||||||| |||||||||| |||||||||| ||||||||||||||
Sbjct 2190 TTATTTGTATTTTGTGACTTTTGGTGTACTAGTTTCTTCATAAACACATCTAAATGCAAT 2249
Query 2325 TTGATTTTTT 2334
||||||||||
Sbjct 2250 TTGATTTTTT 2259
> Ahg938064 jgi|Araly1|938064|scaffold_502255.1
Length=201
Score = 193 bits (104), Expect = 6e-48
Identities = 127/138 (92%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 149 TTTCCAGTTTCAGATTCTGATTATGGCAACACCGGAGACTCGTGGCG-TTGATTCCGATT 207
||||||||||| |||| ||| |||||||||||| |||| || ||||| | | ||||||||
Sbjct 1 TTTCCAGTTTCCGATTTTGAATATGGCAACACCAGAGAATCATGGCGATAG-TTCCGATT 59
Query 208 TAGAGACAGCGGAGAAGATAATACTCCGGTGGGATTCAACAACATCTGAAGAAGCTAAAG 267
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 60 TAGAGACGGCGGAGAAGATAATACTCCGGTGGGATTCAACAACAACTGAAGAAGCTAAAG 119
Query 268 AGAATCTGATTTTCCAAA 285
||||||||||||||||||
Sbjct 120 AGAATCTGATTTTCCAAA 137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87912285460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5