BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G54095.1

Length=830
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg314716 jgi|Araly1|314716|fgenesh1_pm.C_scaffold_1003496           505    2e-142


> Ahg314716 jgi|Araly1|314716|fgenesh1_pm.C_scaffold_1003496
Length=459

 Score =  505 bits (273),  Expect = 2e-142
 Identities = 404/465 (87%), Gaps = 18/465 (4%)
 Strand=Plus/Plus

Query  234  ATGACTGTGAATTTAATGGCGATCGCTGAATCAAAGCCGTCGGAGGTAGGATTTGCAAGA  293
            ||||||||||||||||||| |||| | ||||| ||| |||||||| ||| ||||   |||
Sbjct  1    ATGACTGTGAATTTAATGGTGATCACCGAATCCAAGACGTCGGAGATAGAATTTTTGAGA  60

Query  294  TGCGAATGTTGCGGTATGAAGGAGGAATACACGGCGG-GTTATATAGAGAGCGTACGGTG  352
            || ||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct  61   TGTGAATGTTGCCGTATGAAGGAGGAATACACGGCGGCG-TATATAGAGAGCGTACGGTG  119

Query  353  TCTATACGCCGGGAA-ATTTATTTGTGGTCTCTGCTCTGAGGCAGTTAAGTACGAGATTT  411
            |||||||||||| || |||||| ||||||||||| || ||||| || |||||||||||||
Sbjct  120  TCTATACGCCGG-AATATTTATCTGTGGTCTCTGTTCCGAGGCTGTGAAGTACGAGATTT  178

Query  412  TCCGTTGTGGaaaaaa-aCAGAGACGAATTGGCGTCGACGAGGCTTTGGCGATTCATATG  470
            ||||||| || ||||| | |||||| |||  || ||||||||||||| ||||||||||||
Sbjct  179  TCCGTTGGGGGAAAAAGA-AGAGACAAATCAGCATCGACGAGGCTTTAGCGATTCATATG  237

Query  471  AAGTTTTGCAGCGAGTTTGTTGCTTCTCCGTCTCCGACGGTTGATTTCATATTTGCCATC  530
            ||||| ||| |||||||| |||||||||| |||||||| |||||||||||||  |   | 
Sbjct  238  AAGTTCTGCGGCGAGTTTATTGCTTCTCCCTCTCCGACCGTTGATTTCATATCGGTGGTG  297

Query  531  GGAGAGATATTTA-AG-AGAAGATTAATTCTGAATTTGCCAAGTGTCTTGACGTCAGCAG  588
            |||| | |||||  || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct  298  GGAG-G-TATTTTCAGGAGAAGATTAATTCTGAATTTGCCAAGTGTCGTGACGTCAGCAG  355

Query  589  CG-TCGTTGCCGCCGGCTGTTGACGGTGGAGAGGTTTGTGGTACGGCGGTGATTGGTGGG  647
             | | |||||| ||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct  356  AGCT-GTTGCCTCCGACTGTTGACGGTGGAGAGGTTTGTGCTACGGCGGTGATTGGTGGG  414

Query  648  GCTGG-A-----AGCTGTTTACCTGCTTTGTCGGGAGGTGTTTAG  686
            ||||| |     |||||||||||||||||||| |||||||| |||
Sbjct  415  GCTGGGACTGGGAGCTGTTTACCTGCTTTGTCCGGAGGTGTGTAG  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30688948185


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5