BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G54110.1 Length=867 Score E Sequences producing significant alignments: (Bits) Value Ahg923976 jgi|Araly1|923976|scaffold_105257.1 1022 0.0 Ahg489648 jgi|Araly1|489648|fgenesh2_kg.6__2782__AT1G54110.1 887 0.0 Ahg913256 jgi|Araly1|913256|Al_scaffold_0001_3510 797 0.0 Ahg324082 jgi|Araly1|324082|fgenesh1_pm.C_scaffold_5001626 573 7e-163 > Ahg923976 jgi|Araly1|923976|scaffold_105257.1 Length=776 Score = 1022 bits (553), Expect = 0.0 Identities = 697/764 (91%), Gaps = 20/764 (3%) Strand=Plus/Plus Query 42 TATCTTAAAATGGGAATCGGCAAAACGGAAATCAATTT-CATGAGATTACTTTCAGCTGC 100 ||||||| |||||||||| ||||||| || |||| ||| | |||||||||||| ||||| Sbjct 12 TATCTTATAATGGGAATCAGCAAAACTGAGATCAGTTTGC-GGAGATTACTTTCTGCTGC 70 Query 101 ACCTAATCAGCAAAACCAGTCTAAGCTTATGCATTATGTTGCTACTTTGAGGGAACAGTT 160 ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || Sbjct 71 ACCTAATCAGCAAAATCAGTCTAAGCTTATCCATTATGTTGCTACTTTGAGGGAACAATT 130 Query 161 GGAACAACTCTCGGAAGAGAAGA-CCCTTGAAGGGCTTCCCAGAGTTACAAACGCTAAGG 219 ||||||||||| |||||||||| ||| | |||||||||||||||||||||| ||||||| Sbjct 131 AGAACAACTCTCTGAAGAGAAGATCCC-TCAAGGGCTTCCCAGAGTTACAAAGGCTAAGG 189 Query 220 TGAATGAGTACTATGAGAAGATTGAAGCTGTTGTTTC-ACGAATAGTTGCTCAAGTGCCT 278 ||||||||||||||||||||||||||||||||| ||| | |||||| | |||||||| || Sbjct 190 TGAATGAGTACTATGAGAAGATTGAAGCTGTTGCTTCGA-GAATAGCTACTCAAGTGACT 248 Query 279 CACACAGAGGTATCTGATGAAGCTTTTGCAAAGGATTCTACTAACGATAGTTCTCCCAAA 338 |||||||| ||||| ||||| ||||||||||||||| || | |||||||||||||||| Sbjct 249 GACACAGAGTTATCTTATGAAATTTTTGCAAAGGATTCGACCAGCGATAGTTCTCCCAAA 308 Query 339 GTAGAAGACGATACACGAACCCCCAATTCTCCACAGCTGAGAAGAAGAATCGTGCCTGCA 398 ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||| Sbjct 309 ATAGAAGACGATACACAAAGCCCCACTTCTCCACAGCTGAGAAGAAGAATCGTGCCTGCA 368 Query 399 AGTTCCAAAGAGCAAAGCTATGACGCTGATCCCTCAAAACCAATAAAACTAGACACCGCA 458 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 369 AGTTCCAAGGAGCAAAGCTATGACGCTGATCCCTCAAAACCAATAAAACTAGACACCGCA 428 Query 459 GCTCAA--GCGCAAGTTAACAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATGG 516 |||||| |||| | || |||||||||||||||||||||||||||||||||||||||||| Sbjct 429 GCTCAAGTGCGC-A-TTGACAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATGG 486 Query 517 TGGTACTTGCGAGACAACTTAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAATA 576 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 487 TGGTACTTGCGAGACAACTCAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAATA 546 Query 577 CAGAAAAGATACTTGATTCTACCGAGGAAGCCATTGAGCAAAGCTTAGCAAGCACAGGAC 636 |||||||||||||||| ||||| |||||| |||||||||||||||| |||||||| |||| Sbjct 547 CAGAAAAGATACTTGACTCTACAGAGGAAACCATTGAGCAAAGCTTGGCAAGCACCGGAC 606 Query 637 ACGCAACCGTAAGAGCCACAAAGAT-T-TATTCAGAAAGCTCAAAGACGAGTTGCTTCCA 694 ||||| ||||||||||||||||||| | ||||||||||||||||| || ||||||||||| Sbjct 607 ACGCAGCCGTAAGAGCCACAAAGATATATATTCAGAAAGCTCAAAAACAAGTTGCTTCCA 666 Query 695 G--T----G-G-CTCTTGATCCTCGCCATGACATGTGTGTTCATCATGGTTGTCATGTTG 746 | | | | ||||||||| |||||||||| ||||||||||| ||||||||| ||||| Sbjct 667 GACTTCCAGTGGCTCTTGATCTTCGCCATGACCTGTGTGTTCATAATGGTTGTCTTGTTG 726 Query 747 ATCCGAGTCACATAGAAAATGGTTCCTAGTGTAAACCAAATTAG 790 ||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 727 ATCCGGGTCACATAGAAAATGGTTCGTAGTGTAAACCAAATTAG 770 > Ahg489648 jgi|Araly1|489648|fgenesh2_kg.6__2782__AT1G54110.1 Length=628 Score = 887 bits (480), Expect = 0.0 Identities = 579/626 (92%), Gaps = 10/626 (2%) Strand=Plus/Plus Query 169 TCTCGGAAGAGAAGACCCTTGAAGGGCTTCCCAGAGTTACAAACGCTAAGGTGAATGAGT 228 |||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||| Sbjct 8 TCTCGGAAGAGAAGACCCCTCAAGGGCTTCCCAGAGTTACAAAGGCTAAGGTGAATGAGT 67 Query 229 ACTATGAGAAGATTGAAGCTGTTGTTTC-ACGAATAGTTGCTCAAGTGCCTCACACAGAG 287 |||||||||||||||||||||||| ||| | |||||| |||||||||| || |||||||| Sbjct 68 ACTATGAGAAGATTGAAGCTGTTGCTTCGA-GAATAGCTGCTCAAGTGACTGACACAGAG 126 Query 288 GTATCTGATGAAGCTTTTGCAAAGGATTCTACTAACGATAGTTCTCCCAA-AGTAGAAGA 346 | ||| ||||| ||||||||||||||| || | ||||||||||||||| | ||||||| Sbjct 127 TTTTCTTATGAAAATTTTGCAAAGGATTCGACCAGCGATAGTTCTCCCAATA-TAGAAGA 185 Query 347 CGATACACGAACCCCCAATTCTCCACAGCTGAGAA-GAAGAATCGTGCCTGCAAGTTCCA 405 ||||||||||| ||||| |||||||||||||| || |||||||||||||| | |||||| Sbjct 186 CGATACACGAAGCCCCACTTCTCCACAGCTGA-AACGAAGAATCGTGCCTTTATGTTCCA 244 Query 406 AAGAGCAAAGCTATGACGCTGATCCCTCAAAACCAATAAAACTAGACACCGCAGCTCAAG 465 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 245 AGGAGCCAAGCTATGACGCTGATCCCTCAAAACCAATAAAACTAGACACCGCAGCTCAAG 304 Query 466 CGCA-AGTTAACAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATGGTGGTACTT 524 ||| | || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 CGCGCA-TTGATAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATGGTGGTACTT 363 Query 525 GCGAGACAACTTAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAATACAGAAAAG 584 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 GCGAGACAACTCAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAATACAGAAAAG 423 Query 585 ATACTTGATTCTACCGAGGAAGCCATTGAGCAAAGCTTAGCAAGCAC-AGGACACGCAAC 643 |||||||| ||||| ||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 424 ATACTTGACTCTACAGAGGAAGCCATTGAGCAAAGCTTGGCAAGCACCAG-ACACGCAAC 482 Query 644 CGTAAGAGCCACAAAGATTTATTCAGAAAGCTCAAAGACGAGTTGCTTCCAGTGGCTCTT 703 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 483 CGTAAGAGCCACAAAGATATATTCAGAAAGCTCAAAGACAAGTTGCTTCCAGTGGCTCTT 542 Query 704 GATCCTCGCCATGACATGTGTGTTCATCATGGTTGTCATGTTGATCCGAGTCACATAGAA 763 |||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||||| | Sbjct 543 GATCTTCGCCATGACCTGTGTGTTCATAATGGTTGTCCTGTTGATCCGAGTCACATAGTA 602 Query 764 AATGGTTCCTAGTGTAAACCAAATTA 789 || ||||||||||||||||||||||| Sbjct 603 AAGGGTTCCTAGTGTAAACCAAATTA 628 > Ahg913256 jgi|Araly1|913256|Al_scaffold_0001_3510 Length=606 Score = 797 bits (431), Expect = 0.0 Identities = 523/567 (92%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 199 CCAGAGTTACAAACGCTAAGGTGAATGAGTACTATGAGAAGATTGAAGCTGTTGTTTC-A 257 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 44 CCAAAGTTACAAAGGCTAAGGTGAATGAGTACTATGAGAAGATTGAAGCTGTTGCTTCGA 103 Query 258 CGAATAGTTGCTCAAGTGCCTCACACAGAGGTATCTGATGAAGCTTTTGCAAAGGATTCT 317 |||||| |||||||||| || |||||||| | ||| ||||| ||||||||||||||| Sbjct 104 -GAATAGCTGCTCAAGTGACTGACACAGAGTTTTCTTATGAAAATTTTGCAAAGGATTCG 162 Query 318 ACTAACGATAGTTCTCCCAA-AGTAGAAGACGATACACGAACCCCCAATTCTCCACAGCT 376 || | ||||||||||||||| | |||||||||||||||||| ||||| |||||||||||| Sbjct 163 ACCAGCGATAGTTCTCCCAATA-TAGAAGACGATACACGAAGCCCCACTTCTCCACAGCT 221 Query 377 GAGAA-GAAGAATCGTGCCTGCAAGTTCCAAAGAGCAAAGCTATGACGCTGATCCCTCAA 435 || || |||||||||||||| | ||||||| |||| ||||||||||||||||||||||| Sbjct 222 GA-AACGAAGAATCGTGCCTTTATGTTCCAAGGAGCCAAGCTATGACGCTGATCCCTCAA 280 Query 436 AACCAATAAAACTAGACACCGCAGCTCAAGCGCA-AGTTAACAAGCAGAGAAAGCTTCAA 494 ||||||||||||||||||||||||||||||||| | || |||||||||||||||||||| Sbjct 281 AACCAATAAAACTAGACACCGCAGCTCAAGCGCGCA-TTGACAAGCAGAGAAAGCTTCAA 339 Query 495 GAGGATCTAACCGATGAAATGGTGGTACTTGCGAGACAACTTAAGGAGAGAAGTCAAATG 554 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 340 GAGGATCTAACCGATGAAATGGTGGTACTTGCGAGACAACTCAAGGAGAGAAGTCAAATG 399 Query 555 ATAAGCCAATCTGTGCAAAATACAGAAAAGATACTTGATTCTACCGAGGAAGCCATTGAG 614 |||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 400 ATAAGCCAATTTGTGCAAAATACAGAAAAGATACTTGACTCTACAGAGGAAGCCATTGAG 459 Query 615 CAAAGCTTAGCAAGCACAGGACACGCAACCGTAAGAGCCACAAAGATTTATTCAGAAAGC 674 |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 460 CAAAGCTTGGCAAGCACCGGACACGCAACCGTAAGAGCCACAAAGATATATTCAGAAAGC 519 Query 675 TCAAAGACGAGTTGCTTCCAGTGGCTCTTGATCCTCGCCATGACATGTGTGTTCATCATG 734 |||||||| | |||||||||||||||||||||| |||||||||| ||||||||||| ||| Sbjct 520 TCAAAGACAATTTGCTTCCAGTGGCTCTTGATCTTCGCCATGACCTGTGTGTTCATAATG 579 Query 735 GTTGTCATGTTGATCCGAGTCACATAG 761 |||||| |||||||||||||||||||| Sbjct 580 GTTGTCCTGTTGATCCGAGTCACATAG 606 > Ahg324082 jgi|Araly1|324082|fgenesh1_pm.C_scaffold_5001626 Length=1422 Score = 573 bits (310), Expect = 7e-163 Identities = 473/549 (86%), Gaps = 21/549 (4%) Strand=Plus/Plus Query 51 ATGGGAATCGGCAAAACGGAAATCAATTT-CATGAGATTACTTTCAGCTGCACCTAATCA 109 |||||||| ||||||| || |||||||| | |||||| ||| | ||||||||||| || Sbjct 1 ATGGGAATAAGCAAAACAGAGATCAATTTGC-GGAGATTGCTTGCCGCTGCACCTAACCA 59 Query 110 GCAAAACCAGTCTAAGCTTATGCATTATGTTGCTACTTTGAGGGAACAGTTGGAACAACT 169 |||||| ||||| ||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 60 GCAAAATCAGTCAAAGCTTATGCATTATGTTGCTACATTGAGGGAACAATTAGAACAACT 119 Query 170 CTCGGAAGAGAAGACCCTTGAAGGGCTTCCCAGAGTTACAAACGCTAAGGT-GAATGAGT 228 ||||||||||||||||| | |||| ||||||||||||||||| || || || ||||||| Sbjct 120 CTCGGAAGAGAAGACCCCTCAAGGCCTTCCCAGAGTTACAAAGGCCAA-GTATAATGAGT 178 Query 229 ACTATGAGAAGATTGAAGCTGTTGTTTC-ACGAATAG-TTGCTCAAGTGCCTCACACAGA 286 |||||||||||||||||||||||| ||| | | || | || |||||| |||| ||||||| Sbjct 179 ACTATGAGAAGATTGAAGCTGTTGCTTCGAAG-ATCGCTT-CTCAAGAGCCTGACACAGA 236 Query 287 GGTATCTGATGAAGCTTTTGCAAAGGATTCTACTA-ACGATAGTTCTCCCAAAGTAGAAG 345 | ||||||||||| | |||||||| ||||| |||| || || || || ||| |||||| Sbjct 237 GATATCTGATGAACCCTTTGCAAAAGATTCGACTAGTGGA-AGCTCACCAAAAATAGAAG 295 Query 346 ACGATACACGAACCCCCAATTCTCCACAGCTGAGAAGAAGAATCGTGCCTGCAAGTTCCA 405 | || | |||| ||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 296 ATGAGCCTCGAAGCCCCACTTCTCCACAGCTGAGAAGAAGAATCGTCCCTGCAAGTTCCA 355 Query 406 AAGAGCAAAGCTATGA--C-GCTGATCC-----C-TCAAAACCAATAAAACTAGACACCG 456 | |||||||||| ||| | |||||| | | |||||||||||||||||||||||| Sbjct 356 AGGAGCAAAGCTTTGATGCTGCTGATGCTGATTCATCAAAACCAATAAAACTAGACACCA 415 Query 457 CAGCTCAAGCGCA-AGTTAACAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATG 515 ||||||||||||| | || ||||||| ||||||||||||||||||||||||||||||||| Sbjct 416 CAGCTCAAGCGCACA-TTGACAAGCACAGAAAGCTTCAAGAGGATCTAACCGATGAAATG 474 Query 516 GTGGTACTTGCGAGACAACTTAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAAT 575 ||||||||||| |||||||| ||||||||||||||| |||||||||||| ||||||||| Sbjct 475 GTGGTACTTGCAAGACAACTCAAGGAGAGAAGTCAAGCGATAAGCCAATCCGTGCAAAAT 534 Query 576 ACAGAAAAG 584 || |||||| Sbjct 535 ACTGAAAAG 543 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32099496114 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5