BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54110.1
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923976 jgi|Araly1|923976|scaffold_105257.1 1022 0.0
Ahg489648 jgi|Araly1|489648|fgenesh2_kg.6__2782__AT1G54110.1 887 0.0
Ahg913256 jgi|Araly1|913256|Al_scaffold_0001_3510 797 0.0
Ahg324082 jgi|Araly1|324082|fgenesh1_pm.C_scaffold_5001626 573 7e-163
> Ahg923976 jgi|Araly1|923976|scaffold_105257.1
Length=776
Score = 1022 bits (553), Expect = 0.0
Identities = 697/764 (91%), Gaps = 20/764 (3%)
Strand=Plus/Plus
Query 42 TATCTTAAAATGGGAATCGGCAAAACGGAAATCAATTT-CATGAGATTACTTTCAGCTGC 100
||||||| |||||||||| ||||||| || |||| ||| | |||||||||||| |||||
Sbjct 12 TATCTTATAATGGGAATCAGCAAAACTGAGATCAGTTTGC-GGAGATTACTTTCTGCTGC 70
Query 101 ACCTAATCAGCAAAACCAGTCTAAGCTTATGCATTATGTTGCTACTTTGAGGGAACAGTT 160
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 71 ACCTAATCAGCAAAATCAGTCTAAGCTTATCCATTATGTTGCTACTTTGAGGGAACAATT 130
Query 161 GGAACAACTCTCGGAAGAGAAGA-CCCTTGAAGGGCTTCCCAGAGTTACAAACGCTAAGG 219
||||||||||| |||||||||| ||| | |||||||||||||||||||||| |||||||
Sbjct 131 AGAACAACTCTCTGAAGAGAAGATCCC-TCAAGGGCTTCCCAGAGTTACAAAGGCTAAGG 189
Query 220 TGAATGAGTACTATGAGAAGATTGAAGCTGTTGTTTC-ACGAATAGTTGCTCAAGTGCCT 278
||||||||||||||||||||||||||||||||| ||| | |||||| | |||||||| ||
Sbjct 190 TGAATGAGTACTATGAGAAGATTGAAGCTGTTGCTTCGA-GAATAGCTACTCAAGTGACT 248
Query 279 CACACAGAGGTATCTGATGAAGCTTTTGCAAAGGATTCTACTAACGATAGTTCTCCCAAA 338
|||||||| ||||| ||||| ||||||||||||||| || | ||||||||||||||||
Sbjct 249 GACACAGAGTTATCTTATGAAATTTTTGCAAAGGATTCGACCAGCGATAGTTCTCCCAAA 308
Query 339 GTAGAAGACGATACACGAACCCCCAATTCTCCACAGCTGAGAAGAAGAATCGTGCCTGCA 398
||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 309 ATAGAAGACGATACACAAAGCCCCACTTCTCCACAGCTGAGAAGAAGAATCGTGCCTGCA 368
Query 399 AGTTCCAAAGAGCAAAGCTATGACGCTGATCCCTCAAAACCAATAAAACTAGACACCGCA 458
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 AGTTCCAAGGAGCAAAGCTATGACGCTGATCCCTCAAAACCAATAAAACTAGACACCGCA 428
Query 459 GCTCAA--GCGCAAGTTAACAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATGG 516
|||||| |||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 GCTCAAGTGCGC-A-TTGACAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATGG 486
Query 517 TGGTACTTGCGAGACAACTTAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAATA 576
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 487 TGGTACTTGCGAGACAACTCAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAATA 546
Query 577 CAGAAAAGATACTTGATTCTACCGAGGAAGCCATTGAGCAAAGCTTAGCAAGCACAGGAC 636
|||||||||||||||| ||||| |||||| |||||||||||||||| |||||||| ||||
Sbjct 547 CAGAAAAGATACTTGACTCTACAGAGGAAACCATTGAGCAAAGCTTGGCAAGCACCGGAC 606
Query 637 ACGCAACCGTAAGAGCCACAAAGAT-T-TATTCAGAAAGCTCAAAGACGAGTTGCTTCCA 694
||||| ||||||||||||||||||| | ||||||||||||||||| || |||||||||||
Sbjct 607 ACGCAGCCGTAAGAGCCACAAAGATATATATTCAGAAAGCTCAAAAACAAGTTGCTTCCA 666
Query 695 G--T----G-G-CTCTTGATCCTCGCCATGACATGTGTGTTCATCATGGTTGTCATGTTG 746
| | | | ||||||||| |||||||||| ||||||||||| ||||||||| |||||
Sbjct 667 GACTTCCAGTGGCTCTTGATCTTCGCCATGACCTGTGTGTTCATAATGGTTGTCTTGTTG 726
Query 747 ATCCGAGTCACATAGAAAATGGTTCCTAGTGTAAACCAAATTAG 790
||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 727 ATCCGGGTCACATAGAAAATGGTTCGTAGTGTAAACCAAATTAG 770
> Ahg489648 jgi|Araly1|489648|fgenesh2_kg.6__2782__AT1G54110.1
Length=628
Score = 887 bits (480), Expect = 0.0
Identities = 579/626 (92%), Gaps = 10/626 (2%)
Strand=Plus/Plus
Query 169 TCTCGGAAGAGAAGACCCTTGAAGGGCTTCCCAGAGTTACAAACGCTAAGGTGAATGAGT 228
|||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||
Sbjct 8 TCTCGGAAGAGAAGACCCCTCAAGGGCTTCCCAGAGTTACAAAGGCTAAGGTGAATGAGT 67
Query 229 ACTATGAGAAGATTGAAGCTGTTGTTTC-ACGAATAGTTGCTCAAGTGCCTCACACAGAG 287
|||||||||||||||||||||||| ||| | |||||| |||||||||| || ||||||||
Sbjct 68 ACTATGAGAAGATTGAAGCTGTTGCTTCGA-GAATAGCTGCTCAAGTGACTGACACAGAG 126
Query 288 GTATCTGATGAAGCTTTTGCAAAGGATTCTACTAACGATAGTTCTCCCAA-AGTAGAAGA 346
| ||| ||||| ||||||||||||||| || | ||||||||||||||| | |||||||
Sbjct 127 TTTTCTTATGAAAATTTTGCAAAGGATTCGACCAGCGATAGTTCTCCCAATA-TAGAAGA 185
Query 347 CGATACACGAACCCCCAATTCTCCACAGCTGAGAA-GAAGAATCGTGCCTGCAAGTTCCA 405
||||||||||| ||||| |||||||||||||| || |||||||||||||| | ||||||
Sbjct 186 CGATACACGAAGCCCCACTTCTCCACAGCTGA-AACGAAGAATCGTGCCTTTATGTTCCA 244
Query 406 AAGAGCAAAGCTATGACGCTGATCCCTCAAAACCAATAAAACTAGACACCGCAGCTCAAG 465
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 AGGAGCCAAGCTATGACGCTGATCCCTCAAAACCAATAAAACTAGACACCGCAGCTCAAG 304
Query 466 CGCA-AGTTAACAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATGGTGGTACTT 524
||| | || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 CGCGCA-TTGATAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATGGTGGTACTT 363
Query 525 GCGAGACAACTTAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAATACAGAAAAG 584
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 GCGAGACAACTCAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAATACAGAAAAG 423
Query 585 ATACTTGATTCTACCGAGGAAGCCATTGAGCAAAGCTTAGCAAGCAC-AGGACACGCAAC 643
|||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 424 ATACTTGACTCTACAGAGGAAGCCATTGAGCAAAGCTTGGCAAGCACCAG-ACACGCAAC 482
Query 644 CGTAAGAGCCACAAAGATTTATTCAGAAAGCTCAAAGACGAGTTGCTTCCAGTGGCTCTT 703
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 483 CGTAAGAGCCACAAAGATATATTCAGAAAGCTCAAAGACAAGTTGCTTCCAGTGGCTCTT 542
Query 704 GATCCTCGCCATGACATGTGTGTTCATCATGGTTGTCATGTTGATCCGAGTCACATAGAA 763
|||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||||| |
Sbjct 543 GATCTTCGCCATGACCTGTGTGTTCATAATGGTTGTCCTGTTGATCCGAGTCACATAGTA 602
Query 764 AATGGTTCCTAGTGTAAACCAAATTA 789
|| |||||||||||||||||||||||
Sbjct 603 AAGGGTTCCTAGTGTAAACCAAATTA 628
> Ahg913256 jgi|Araly1|913256|Al_scaffold_0001_3510
Length=606
Score = 797 bits (431), Expect = 0.0
Identities = 523/567 (92%), Gaps = 8/567 (1%)
Strand=Plus/Plus
Query 199 CCAGAGTTACAAACGCTAAGGTGAATGAGTACTATGAGAAGATTGAAGCTGTTGTTTC-A 257
||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 44 CCAAAGTTACAAAGGCTAAGGTGAATGAGTACTATGAGAAGATTGAAGCTGTTGCTTCGA 103
Query 258 CGAATAGTTGCTCAAGTGCCTCACACAGAGGTATCTGATGAAGCTTTTGCAAAGGATTCT 317
|||||| |||||||||| || |||||||| | ||| ||||| |||||||||||||||
Sbjct 104 -GAATAGCTGCTCAAGTGACTGACACAGAGTTTTCTTATGAAAATTTTGCAAAGGATTCG 162
Query 318 ACTAACGATAGTTCTCCCAA-AGTAGAAGACGATACACGAACCCCCAATTCTCCACAGCT 376
|| | ||||||||||||||| | |||||||||||||||||| ||||| ||||||||||||
Sbjct 163 ACCAGCGATAGTTCTCCCAATA-TAGAAGACGATACACGAAGCCCCACTTCTCCACAGCT 221
Query 377 GAGAA-GAAGAATCGTGCCTGCAAGTTCCAAAGAGCAAAGCTATGACGCTGATCCCTCAA 435
|| || |||||||||||||| | ||||||| |||| |||||||||||||||||||||||
Sbjct 222 GA-AACGAAGAATCGTGCCTTTATGTTCCAAGGAGCCAAGCTATGACGCTGATCCCTCAA 280
Query 436 AACCAATAAAACTAGACACCGCAGCTCAAGCGCA-AGTTAACAAGCAGAGAAAGCTTCAA 494
||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 281 AACCAATAAAACTAGACACCGCAGCTCAAGCGCGCA-TTGACAAGCAGAGAAAGCTTCAA 339
Query 495 GAGGATCTAACCGATGAAATGGTGGTACTTGCGAGACAACTTAAGGAGAGAAGTCAAATG 554
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 340 GAGGATCTAACCGATGAAATGGTGGTACTTGCGAGACAACTCAAGGAGAGAAGTCAAATG 399
Query 555 ATAAGCCAATCTGTGCAAAATACAGAAAAGATACTTGATTCTACCGAGGAAGCCATTGAG 614
|||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 400 ATAAGCCAATTTGTGCAAAATACAGAAAAGATACTTGACTCTACAGAGGAAGCCATTGAG 459
Query 615 CAAAGCTTAGCAAGCACAGGACACGCAACCGTAAGAGCCACAAAGATTTATTCAGAAAGC 674
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 460 CAAAGCTTGGCAAGCACCGGACACGCAACCGTAAGAGCCACAAAGATATATTCAGAAAGC 519
Query 675 TCAAAGACGAGTTGCTTCCAGTGGCTCTTGATCCTCGCCATGACATGTGTGTTCATCATG 734
|||||||| | |||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct 520 TCAAAGACAATTTGCTTCCAGTGGCTCTTGATCTTCGCCATGACCTGTGTGTTCATAATG 579
Query 735 GTTGTCATGTTGATCCGAGTCACATAG 761
|||||| ||||||||||||||||||||
Sbjct 580 GTTGTCCTGTTGATCCGAGTCACATAG 606
> Ahg324082 jgi|Araly1|324082|fgenesh1_pm.C_scaffold_5001626
Length=1422
Score = 573 bits (310), Expect = 7e-163
Identities = 473/549 (86%), Gaps = 21/549 (4%)
Strand=Plus/Plus
Query 51 ATGGGAATCGGCAAAACGGAAATCAATTT-CATGAGATTACTTTCAGCTGCACCTAATCA 109
|||||||| ||||||| || |||||||| | |||||| ||| | ||||||||||| ||
Sbjct 1 ATGGGAATAAGCAAAACAGAGATCAATTTGC-GGAGATTGCTTGCCGCTGCACCTAACCA 59
Query 110 GCAAAACCAGTCTAAGCTTATGCATTATGTTGCTACTTTGAGGGAACAGTTGGAACAACT 169
|||||| ||||| ||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 60 GCAAAATCAGTCAAAGCTTATGCATTATGTTGCTACATTGAGGGAACAATTAGAACAACT 119
Query 170 CTCGGAAGAGAAGACCCTTGAAGGGCTTCCCAGAGTTACAAACGCTAAGGT-GAATGAGT 228
||||||||||||||||| | |||| ||||||||||||||||| || || || |||||||
Sbjct 120 CTCGGAAGAGAAGACCCCTCAAGGCCTTCCCAGAGTTACAAAGGCCAA-GTATAATGAGT 178
Query 229 ACTATGAGAAGATTGAAGCTGTTGTTTC-ACGAATAG-TTGCTCAAGTGCCTCACACAGA 286
|||||||||||||||||||||||| ||| | | || | || |||||| |||| |||||||
Sbjct 179 ACTATGAGAAGATTGAAGCTGTTGCTTCGAAG-ATCGCTT-CTCAAGAGCCTGACACAGA 236
Query 287 GGTATCTGATGAAGCTTTTGCAAAGGATTCTACTA-ACGATAGTTCTCCCAAAGTAGAAG 345
| ||||||||||| | |||||||| ||||| |||| || || || || ||| ||||||
Sbjct 237 GATATCTGATGAACCCTTTGCAAAAGATTCGACTAGTGGA-AGCTCACCAAAAATAGAAG 295
Query 346 ACGATACACGAACCCCCAATTCTCCACAGCTGAGAAGAAGAATCGTGCCTGCAAGTTCCA 405
| || | |||| ||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 296 ATGAGCCTCGAAGCCCCACTTCTCCACAGCTGAGAAGAAGAATCGTCCCTGCAAGTTCCA 355
Query 406 AAGAGCAAAGCTATGA--C-GCTGATCC-----C-TCAAAACCAATAAAACTAGACACCG 456
| |||||||||| ||| | |||||| | | ||||||||||||||||||||||||
Sbjct 356 AGGAGCAAAGCTTTGATGCTGCTGATGCTGATTCATCAAAACCAATAAAACTAGACACCA 415
Query 457 CAGCTCAAGCGCA-AGTTAACAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATG 515
||||||||||||| | || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 416 CAGCTCAAGCGCACA-TTGACAAGCACAGAAAGCTTCAAGAGGATCTAACCGATGAAATG 474
Query 516 GTGGTACTTGCGAGACAACTTAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAAT 575
||||||||||| |||||||| ||||||||||||||| |||||||||||| |||||||||
Sbjct 475 GTGGTACTTGCAAGACAACTCAAGGAGAGAAGTCAAGCGATAAGCCAATCCGTGCAAAAT 534
Query 576 ACAGAAAAG 584
|| ||||||
Sbjct 535 ACTGAAAAG 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099496114
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5