BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54115.1
Length=2060
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474542 jgi|Araly1|474542|fgenesh2_kg.1__4496__AT1G54115.1 3094 0.0
Ahg929180 jgi|Araly1|929180|scaffold_301637.1 1570 0.0
> Ahg474542 jgi|Araly1|474542|fgenesh2_kg.1__4496__AT1G54115.1
Length=2023
Score = 3094 bits (1675), Expect = 0.0
Identities = 1913/2024 (95%), Gaps = 32/2024 (2%)
Strand=Plus/Plus
Query 1 ATGAGAGCTGTGAATTTTATGTATAGCTCGAATAATCCCAAATTTCGAGGGATTTTCAAT 60
|||||||||||||||||| | |||||||||| ||||||||||||||| |||||||| |||
Sbjct 1 ATGAGAGCTGTGAATTTTCTATATAGCTCGAGTAATCCCAAATTTCGGGGGATTTTTAAT 60
Query 61 GGGCTTTGCGCTATAATCCTATTCATCTTCTTCTTTGATCAGAGCGATAT-TTACAGGAA 119
|||||||| || ||| |||||||||||||||||||||||| ||| ||||| | ||||||
Sbjct 61 GGGCTTTGTGCAATAGTCCTATTCATCTTCTTCTTTGATCGGAGTGATATACT-CAGGAA 119
Query 120 CCCTTTGTTGAA-GAATCTTTCTTTCGTTGATTCTAGTGGTAAATTCAATCGTGGGTTTA 178
||||||||| || |||||| ||||||||||||||||| ||| |||||| | ||||||||
Sbjct 120 CCCTTTGTT-AAGGAATCTGTCTTTCGTTGATTCTAGCGGTCAATTCAGTAATGGGTTTA 178
Query 179 GCCAGTTTACTGTACCTCGTCGACATTTGAGTGAAGTTGACACTAATGGCTCTTCTGGTA 238
|||||||||||||| |||||||||||||||| | | | ||||||||||
Sbjct 179 GCCAGTTTACTGTAATTCGTCGACATTTGAGT---G--G-------T---TCTTCTGGTA 223
Query 239 ATAGCAGCTTGAGTGGTGATAGTACTGTATCCTGCTCTGGGTTACATGAACATAGAGGTT 298
||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||
Sbjct 224 ATAGCAGCTTGAGTGGTGATACTACTGTATCTTGCTCTGGGTTACATGAACACAGAGGTT 283
Query 299 ATGCTGATCAATGCGAATTCTTGAAATCGAATCCAATTTGTTCTCCAGATGGCTTCTTTG 358
||| |||||||||||| ||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 284 ATGTTGATCAATGCGAGTTCTTGATATCGAATCCGATTTGTTCTCCAGATGGGTTCTTTG 343
Query 359 ATTACCTCAAGTTCTTTTACTGCTCCTGCAGAGATTTTAAGATCTTGGGTTATATACTGT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 344 ATTACCTCAAGTTCTTTTACTGCTCCTGCAGAGATTTTAAGATCTTGGGTTATTTAGTGT 403
Query 419 TAGGTGTTTGGCTTGTTGCTTTGTTTTATCTGTTGGGTAATACTGCTGCTGATTACTTTT 478
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 404 TAGGGGTTTGGCTTGTTGCTTTGTTTTATCTTTTGGGTAATACTGCTGCTGATTACTTTT 463
Query 479 GTTGTTCGTTGGAGAAGCTTTCTAAGCTTTTGAGGTTGCCTCCAACTGTTGCTGGTGTTA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 GTTGTTCGTTGGAGAAGCTTTCTAAGCTTTTGAGGTTGCCTCCAACTGTTGCTGGTGTTA 523
Query 539 CTTTGCTTCCACTTGGTAACGGAGCTCCTGATGTGTTTGCGAGTATAGCTGCTTTTGTTG 598
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CTTTGCTTCCACTTGGTAATGGAGCTCCTGATGTGTTTGCGAGTATAGCTGCTTTTGTTG 583
Query 599 GTTCAGATAAAGGGGAAGTGGGTCTCAACAGCGTCTTGGGTGGTGCAgtgtttgtgactt 658
||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 584 GTTCAGATAAAGGGGAAGTGGGTCTTAACAGCGTCTTGGGTGGTGCGGTGTTTGTAACTT 643
Query 659 gtgttgttgttgggattgtttcactttgtgttgCGGATAAAGAAGTTAAGATTGATAAGA 718
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 644 GTGTTGTTGTTGGGATTGTTTCTCTTTGTGTTGCGGATAAAGAAGTTAAGATCGATAAGA 703
Query 719 AATGTTTCATCAGAGACTTGAGTTTCTTCCTTTTCACATTGGTGGCTTTGATGGTGATTT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 AATGTTTCATCAGAGACTTGAGTTTCTTCCTTTTCACATTGGTGGCTTTGATGGTGATTT 763
Query 779 TGATGGTTGGTAAGGTGACTGTGGGTATTGCCATTGCGTTTGTCTCGATCTATGTGTTTT 838
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 764 TGATGGTCGGTAAGGTGACTGTTGGTATCGCCATTGCGTTTGTCTCGATCTATGTCCTTT 823
Query 839 ATGCTTCTCTCGTGGCTGCGAATGAGATTTTGAGGAAACATTCCAGGAGGTTGAAGCTGG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 ATGCTTCTCTCGTGGCTGCGAATGAGATTTTGAGGAAACATTCCAGGAGGTTGAAGCTGG 883
Query 899 ATTCTATTACGCCTTTGCTCCCAATGCAAGGAAGTGTGTTCTCCTCCCCAAGTGTTGAAG 958
||||| |||||||||||||||||||||| ||||||||||||||| || |||||||||||
Sbjct 884 ATTCTCTTACGCCTTTGCTCCCAATGCAGGGAAGTGTGTTCTCC-CC--AAGTGTTGAAG 940
Query 959 AGGATATTCCTATGTACAGCCCGTTGATGGAGCTTGACACCG-GTGAAGGTCCACCTCGG 1017
|||||||||||||||||||||||||| | || |||||||||| | |||||||||||||||
Sbjct 941 AGGATATTCCTATGTACAGCCCGTTGCTAGAACTTGACACCGAG-GAAGGTCCACCTCGG 999
Query 1018 CTACATGATTCTCTACCACAGTGGATGTGGGCTACAAATGTAGCCATCTATTCAAACCAT 1077
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 CTACATGATTCTCTCCCACAGTGGATGTGGGCTACAAATGTAGCCATCTATTCAAACCAT 1059
Query 1078 TTCGCAAAAGCCAATGTTCATGATGAAGAAAGACCTCCATGGGGGTGGACCGAAGATGGT 1137
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1060 TTCGCAAAAGCCAATGTACATGATGAAGAAAGACCTCCATGGGGATGGACCGAAGATGGT 1119
Query 1138 GCAGAAGTCGAGAGCTCGTTATGTTCTAAAATCACATCTTTGCTGGAAACTCCACTGACT 1197
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1120 GCAGAAGTCGAGAGCTCATTATGTTCTAAAATCACATCTTTTCTGGAAACTCCACTGACT 1179
Query 1198 GTTCCTAGACGGTTGACAATCCCATTGATTGAGGAAGATAGCTGGTCAAAGACGTATGCG 1257
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1180 GTTCCTAGACGGTTGACAATCCCGTTGATTGAGGAAGATAGCTGGTCAAAGACGTATGCG 1239
Query 1258 GTGGCTAGTGTCTCGCTGGCGCCTGTCCTACTTTCCTTTCTTTGGAGCAGCCAAGATGAT 1317
||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1240 GTGGCTAGTGTCTCGTTGGCTCCTGTCCTACTTTCTTTTCTTTGGAGCAGCCAAGATGAT 1299
Query 1318 ACGAGTCTTCAAGCTCGCATTGTAGCCTATTTTATCGGAATTGCGATTGGATCTACTCTT 1377
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 ACGAGTCTTCAAGCTCGGATTGTAGCCTATTTTATCGGAATTGCGATTGGATCTACTCTT 1359
Query 1378 GGATATCTCGCGTTCAAAAACACAGAGCCCGACCGTCCACCTCAAATATATTTAATCCCT 1437
||||||||||||| |||||||||||| ||||| ||||||||||||| ||| |||||||||
Sbjct 1360 GGATATCTCGCGTACAAAAACACAGAACCCGATCGTCCACCTCAAAGATACTTAATCCCT 1419
Query 1438 TGGGTACTTGGTGGATTCATCATGAGCATCGTATGGTTCTACATGATTGCAAACGAACTT 1497
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 TGGGTACTCGGTGGATTCATCATGAGCATCGTATGGTTCTACATGATTGCAAACGAACTC 1479
Query 1498 GTTGCACTTTTGGTTACATTTGGTGGAATCTATGGAATCAACCCGTCAATACTCGGTCTA 1557
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1480 GTTGCACTTTTGGTTACATTTGGTGGAATCTACGGAATCAACCCGTCGATACTCGGTCTA 1539
Query 1558 ACCGTACTTGCTTGGGGAAACTCAATGGGTGACTTAGTGTCAAACATCGCATTGTCAATG 1617
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1540 ACCGTACTTGCTTGGGGAAACTCAATGGGTGACTTAGTGTCGAACATCGCATTGTCGATG 1599
Query 1618 AACGGTGGAGATGGGGTACAAATCGCGTTGTCTGGTTGCTACGCAGGTCCAATGTTTAAC 1677
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 1600 AACGGTGGAGATGGGGTACAAATCGCATTATCGGGTTGCTACGCAGGTCCAATGTTTAAC 1659
Query 1678 ACGCTTGTTGGGTTAGGTATGTCGATGTTTCTTGGTGCTTGGTCGAAAAGTCCAGAGACT 1737
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1660 ACGCTTGTTGGGTTAGGTATGTCGATGTTTCTTGGTGCTTGGTCGAAGAGTCCAGAGACA 1719
Query 1738 TACATGATCCCGGAGGACAATAGCTTGTTCTACACTCTAGGGTTTCTAATATTCGGATTG 1797
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 TACATGATCCCTGAGGACAATAGCTTGTTCTACACTCTAGGGTTTCTAATATTCGGATTG 1779
Query 1798 ATTTGGTCTCTTGTGATGCTCCCACGCAACGAAATGCGACCGAACAAAGTGATGGGCATT 1857
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1780 ATTTGGTCTCTTGTGATGCTCCCACGCAACGAAATGCGACCGAACAAAGTGATGGGAATT 1839
Query 1858 GGTCTTATTACACTGTATCTGATATTCGTCACTTTCAGGCTTAGCTCCGCCATGGGATTC 1917
||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1840 GGTCTGATTGCACTGTATCTGATATTCGTCACTTTCAGGCTCAGCTCCGCCATGGGATTC 1899
Query 1918 ATACCTTGGGCTTCTTGAAACGCCATTGTTGCCAGCTTATTGTATAC-A-T---CATGTT 1972
|||||||||||||||| |||||||||||||||||||||||||||||| | | ||||||
Sbjct 1900 ATACCTTGGGCTTCTTAAAACGCCATTGTTGCCAGCTTATTGTATACTACTATACATGTT 1959
Query 1973 GTTAGAGATATAGCCCACTGGTTCTGAAGTAAATGTTGTTTGTA 2016
|||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1960 GTTAGAGATA--GCC-ACTGGTTCTGAAGTAAATGTTGTTTGTA 2000
> Ahg929180 jgi|Araly1|929180|scaffold_301637.1
Length=1981
Score = 1570 bits (850), Expect = 0.0
Identities = 1611/1973 (82%), Gaps = 73/1973 (4%)
Strand=Plus/Plus
Query 1 ATGAGAGCTGTGAATTTTATGTATAGCTCGAATAATCCCAAATTTCGAGGGATTTTCAAT 60
||||| || |||| |||| | || |||||||| || ||||||||||||||| |||||||
Sbjct 27 ATGAGCGCGGTGAGTTTTCTTTACAGCTCGAAAAACCCCAAATTTCGAGGGGCTTTCAAT 86
Query 61 GGGCTTTGCGCTATAATCCTATTCAT-CTTCTTCTTTGATCAGAGCGATATT-TACAGGA 118
||| |||| ||| | | || || | |||||||||||||| |||||||||| | |||||
Sbjct 87 GGGATTTGTGCTCTGGTTCTGTT-TTGCTTCTTCTTTGATCGGAGCGATATTCT-CAGGA 144
Query 119 ACCCTTTGTTGAAGAATCT-TTCTTTCGT---TGATTCTAGTGG-T-AA-AT-TCAATCG 170
|||||||||| | ||| || ||| |||| || | |||||| | || | | | |
Sbjct 145 ACCCTTTGTTTAGGAA-CTCATCTCTCGTCAATGGTGGTAGTGGCTCAACCTCCCGA-GG 202
Query 171 TGGGTTTAGCCA--GTTT-ACTG-TACCTCGTCGACATTTGAGTG-AAGTTGACACTAAT 225
| || | | |||| || | || |||| || || |||| | || |||| || |||
Sbjct 203 TAAATTCAATAATGGTTTCAC-GTTAATTCGTAGAAATGTGAG-GCAAATTGAAACGAAT 260
Query 226 GGCTCTTCTGGTAATAGCAGCTTGAGTGGTGA-TAGTACTGTATCCTGCTCTGGGTTACA 284
| |||||| ||||||||||||||| | | ||||||||| | | ||| ||||||||
Sbjct 261 -G--ATTCTGGCAATAGCAGCTTGAGTAG-CACTAGTACTGTTTTATTCTCAGGGTTACA 316
Query 285 TGAACATAGAGGTTATGCTGATCAATGCGAATTCTTGAAATCGAATCCAATTTGTTCTCC 344
|||| | |||||||||||||||||||| ||||| ||| | |||||||||||||| ||
Sbjct 317 CAAACACATTGGTTATGCTGATCAATGCGACTTCTTAAAAGCAAATCCAATTTGTTCCCC 376
Query 345 AGATGGCTTCTTTGATTACCTCAAGTTCTTTTACTGCTCCTGCAGAGATTTTAAG-ATCT 403
||||| ||||||||||||||||| ||||| ||||||||||||||||| ||| || ||||
Sbjct 377 TGATGGATTCTTTGATTACCTCAACTTCTTCTACTGCTCCTGCAGAGA-TTTCAGTATCT 435
Query 404 TGGGTTATAT-ACTGTTAGGTGTTTGGCTTGTTGCTTTGTTTTATCTGTTGGGTAATACT 462
||||||| || | |||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 436 TGGGTTACATGA-TGTTGGGTGTTTGGCTTGTTGCATTGTTTTATCTGTTGGGTAATACT 494
Query 463 GCTGCTGATTACTTTTGTTGTTCGTTGGAGAAGCTTTCTAAGCTTTTGAGGTTGCCTCCA 522
||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||||||
Sbjct 495 GCTGCTGATTACTTTTGTTGTTCATTGGAGAAGCTTTCAAAGCTTTTGAGGCTACCTCCA 554
Query 523 ACTGTTGCTGGTGTTACTTTGCTTCCACTTGGTAACGGAGCTCCTGATGTGTTTGCGAGT 582
|||||||||||||||||||| ||||| ||||| || ||||| || ||||||||||| |||
Sbjct 555 ACTGTTGCTGGTGTTACTTTACTTCCTCTTGGGAATGGAGCACCAGATGTGTTTGCTAGT 614
Query 583 ATAGCTGCTTTTGTTGGTTCAGATAAAGGGGAAGTGGGTCTCAACAGCGTCTTGGGTGGT 642
||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 615 ATAGCTGCTTTTGTTGGAACAGATAAAGGAGAAGTTGGTCTTAACAGCGTCTTGGGTGGT 674
Query 643 GCAgtgtttgtgacttgtgttgttgttgggattgtttcactttgtgttgCGGATAAAGAA 702
|| |||||||| |||| |||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 675 GCTGTGTTTGTTACTTCTGTTGTTGTTGGCATTGTTTCCCTTTGTGTTGCGGATAAGGAT 734
Query 703 GTTAAGATTGATAAGAAATGTTTCATCAGAGACTTGAGTTTCTTCCTTTTCACATTGGTG 762
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct 735 GTCAAGATCGATAAGAAATGCTTCATCAGAGACTTGAGTTTCTTCCTTTTCACGCTCGTG 794
Query 763 GCTTTGATGGTGATTTTGATGGTTGGTAAGGTGACTGTG-GGTATTGCCATTGCGTTTGT 821
||||| |||||||||||||||||||||| ||||| || || |||||||| || |||||
Sbjct 795 TCTTTGTTGGTGATTTTGATGGTTGGTAAAGTGACAGTACGG-ATTGCCATCGCCTTTGT 853
Query 822 CTCGATCTATGTGTTTTATGCTTCTC-TCGTGGCTGCGAATGAGATTTTGAGGAAACATT 880
|||||| |||||| ||||||||| || | ||||| ||||||| ||| |||| ||||||
Sbjct 854 CTCGATATATGTGATTTATGCTT-TCCTTGTGGCAGCGAATGTCATTCTGAGAAAACATG 912
Query 881 CCAGGAGGTTGAAGCTGGATTCTATTACGCCTTTGCTCCCAATGCAAGGAAGTGTGTTCT 940
| | |||||| || || || || |||| |||||||| || ||||||| ||| ||||| |
Sbjct 913 CTAAGAGGTTTAAACTAGAGGCTCTTACTCCTTTGCTACCTATGCAAGAAAGCGTGTT-T 971
Query 941 CCTCCCCAAGTGTTGAAGAGGATATTCCTATGTACAGCCCGTTGATGGAG-CTTGACACC 999
||||| ||||||| ||||||||| || ||| | | ||| ||||| || || ||| ||
Sbjct 972 --TCCCCGAGTGTTGGAGAGGATATGCCAATGAATACCCCCTTGATAGAAACT-GAC-CC 1027
Query 1000 GGTGAA-GGTCCACCTCGGCTACATGATTCTCTACCACAGTGGATGTGGGC-TACAAATG 1057
| | | ||||||||||||||||| || ||| | || |||||||||||||| | ||||||
Sbjct 1028 TGAGGATGGTCCACCTCGGCTACA-GAGTCT-T-CCTCAGTGGATGTGGGCGT-CAAATG 1083
Query 1058 TAGCCATCTATTCAAACCATTTCGCAAAAGCCAATGTTCATGATGAAGAAAGACCTCCAT 1117
| ||||||||||| ||||||||||| |||| | ||| ||||||||||| || || || |
Sbjct 1084 TGGCCATCTATTCCAACCATTTCGCGAAAGTTAGTGTACATGATGAAGACAGGCCACCTT 1143
Query 1118 GGGGGTGGACCGAAGATGGTGCAGAAGTCGAGAGCTCGTTATGTTCTAAAATCACATCTT 1177
|||| |||| || || |||||||||| |||||||| | |||| ||||| |||| || |
Sbjct 1144 GGGGATGGATTGATGACAGTGCAGAAGTTGAGAGCTCCTCATGTACTAAATTCACTTCCT 1203
Query 1178 TGCTGGAAACTCCACTGACTG-TTCCTAG-ACGGTTGACAATCCCATTGATTGAGGAAGA 1235
|| |||||| ||| ||||| | |||| || | |||| ||||| |||| | | ||||||||
Sbjct 1204 TGTTGGAAATTCCGCTGAC-GATTCCAAGGA-GGTTAACAATTCCATCGGTCGAGGAAGA 1261
Query 1236 TAGC-TGGTCAAAGACGTATGCGGTGGCTAGTGTCT-CGCTGGCGCCTGTCCTACTTTC- 1292
|| | ||||||||||| ||||| ||||| || || | | | || |||||||| |||
Sbjct 1262 TA-CATGGTCAAAGACATATGCTGTGGCCAGCGT-TACATTAGCTCCTGTCCT--TTTGG 1317
Query 1293 CTT-TCTTTGGAGCAGCCAAGATGATACGAGTCTTCAAGCTCGCATTGTAGCCTATTTTA 1351
| | ||| ||||| |||||||| ||| ||||| |||||| | ||| || || ||||
Sbjct 1318 CGTCTCTCTGGAGTAGCCAAGACGATGTGAGTCCCCAAGCTTGTGGTGTCGCATACTTTA 1377
Query 1352 TCGGAATTGCGATTGGATCTACTCTTGGATATCTCGCGTT-CAAAAACACAGAGCCCGAC 1410
| || |||| || || ||||||||||| | ||| || || |||||||||||| |||||
Sbjct 1378 TTGGTGTTGCTATAGGCTCTACTCTTGGTTTTCTTGC-TTACAAAAACACAGAACCCGAT 1436
Query 1411 CGTCCACCTCAAATATAT-TTAATCCCTTGGGTACTTGGTGGATTCATCATGAGCATCGT 1469
| ||||||| || || | || ||||||||||| |||||||| || ||||||||||||||
Sbjct 1437 CACCCACCTCGAAGAT-TCTTGATCCCTTGGGTCCTTGGTGGGTTTATCATGAGCATCGT 1495
Query 1470 ATGGTTCTACATGATTGCAAACGAACTTGTTGCACTTTTGGTTACATTTGGTG-GAATCT 1528
|||||||||||||||||||||||||||||| || ||| |||| |||||||||| || | |
Sbjct 1496 ATGGTTCTACATGATTGCAAACGAACTTGTAGCTCTTCTGGTGACATTTGGTGAGATT-T 1554
Query 1529 ATGGAATCAACCCGTCAATACTCG-GTCTAACCGTACTTGCTTGGGGAAACTCAATGGGT 1587
| ||||| |||||||| ||||| | | ||||| |||||||||||||||||||||||||||
Sbjct 1555 ACGGAATTAACCCGTCGATACTTGCG-CTAACAGTACTTGCTTGGGGAAACTCAATGGGT 1613
Query 1588 GACTTAGTGTCAAACATCGCATTGTCAATGAACGGTGGAGATGGGGTACAAATCGCGTTG 1647
||||||||||| || ||||||||| | ||||||||||||||||| ||||||||||| |
Sbjct 1614 GACTTAGTGTCGAATATCGCATTGACGATGAACGGTGGAGATGGTGTACAAATCGCCCTA 1673
Query 1648 TCTGGTTGCTACGCAGGTCCAATGTTTAACACGCTTGTTGGGTTAGGTATGTCGATG-TT 1706
||||| ||||| |||||||||||||| ||||| || || ||| | |||||||| ||| ||
Sbjct 1674 TCTGGATGCTATGCAGGTCCAATGTTCAACACACTCGTCGGGCTCGGTATGTCAATGCTT 1733
Query 1707 TCTTGGTGCTTGGTCGAAAAGTCCAGAGACTTACATGATCCCGGAGGACAATAGCTTGTT 1766
| |||| || ||||| || ||||| || || |||||| | || || ||||| ||| ||||
Sbjct 1734 T-TTGGCGCATGGTCCAAGAGTCCTGACACATACATGCTACCAGAAGACAAAAGCCTGTT 1792
Query 1767 CTACACTCTAGGGTTTCTAATATTCGGATTGATTTGGTCTCTTGTGATGCTCCCACGCAA 1826
|||||| || ||||||||| || |||| ||| ||||| || | ||||| ||||| |||||
Sbjct 1793 CTACACACTTGGGTTTCTAGTAGTCGGTTTGGTTTGGGCTATGGTGATACTCCCGCGCAA 1852
Query 1827 CGAAATGCGACCGAACAA-AG-TGATGGGCATTGGTCTTATTACACTGTATCTGATATTC 1884
||| |||||||| |||| | | | || || || || ||| || | ||||||||||||
Sbjct 1853 CGACATGCGACCTAACAGGACCTTA-GGT-ATGGGACTCATTGCAATATATCTGATATTC 1910
Query 1885 GTCACTTTCAGGCTTAGCTCCGCCATGGGATTCATACCTTGGGCTTCTTGAAA 1937
|||||||||||||| || | |||||||||||||||||| |||||| ||| |||
Sbjct 1911 GTCACTTTCAGGCTCAGTTGCGCCATGGGATTCATACCATGGGCTGCTT-AAA 1962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77475558330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5