BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G54120.1

Length=521
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474543 jgi|Araly1|474543|fgenesh2_kg.1__4497__AT1G54120.1         549    7e-156


> Ahg474543 jgi|Araly1|474543|fgenesh2_kg.1__4497__AT1G54120.1
Length=381

 Score =  549 bits (297),  Expect = 7e-156
 Identities = 355/382 (93%), Gaps = 8/382 (2%)
 Strand=Plus/Plus

Query  59   ATGGATCAACGCATCGCCGCAATC-CCCGTGTTCCGGTGG--T----CTAGGAGCCGTCG  111
            ||||||| |||||||||||||| | ||| | |||||||||  |    ||||||| || ||
Sbjct  1    ATGGATCCACGCATCGCCGCAA-CACCCTTATTCCGGTGGTCTAGGACTAGGAGTCGCCG  59

Query  112  AAAGATTCATATCCGTCGCCGTAAGTCGCAGGTGGTACGTCTTGGTGGGAAGAACAGTGC  171
             ||||||||| ||||||| |||||||||||||||||||||||||| |||||||||| |||
Sbjct  60   GAAGATTCATCTCCGTCGTCGTAAGTCGCAGGTGGTACGTCTTGGCGGGAAGAACAATGC  119

Query  172  GGTGTCACGTGGCGGATTCTCGTTAAAGAAGATGGTAAGGAGGATGAAGCTGAGATGGTT  231
            |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct  120  GGTGTCACGTGGCGGATTCTCGTTAAAGAAGATGGTTAGGAAGATGAAGCTGAGATGGTT  179

Query  232  GAAGCTACACTACGTGAGAGTTGTGAAGAAGATAAAAGTGTTTTATCGTAATTTGGTTAA  291
            ||||||||||||||||||| |||| ||||||||||||| |||||||| |||||| |||||
Sbjct  180  GAAGCTACACTACGTGAGACTTGTAAAGAAGATAAAAGGGTTTTATCTTAATTTAGTTAA  239

Query  292  AGAGTTCGTAGACGCAGGAGCTGAGCTTGAAGCGATTCAGCAGCGAATGGCGGTTGAAGC  351
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  GGAGTTCGTAGACGCAGGAGCTGAGCTTGAAGCGATTCAGCAGCGAATGGCGGTTGAAGC  299

Query  352  GGCTGCGTTTGCGGTTCCCGGTTTAGGTCTCTCTTTCTCTTCTTTTTCAGTCCATGACCG  411
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  GGCTGCGTTTGTGGTTCCCGGTTTAGGTCTCTCTTTCTCTTCTTTTTCAGTCCATGACCG  359

Query  412  AGCACGGTATTTTCTTGTATAG  433
            ||||||||||||||||||||||
Sbjct  360  AGCACGGTATTTTCTTGTATAG  381



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18963327733


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5