BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54130.1
Length=2633
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923979 jgi|Araly1|923979|scaffold_105260.1 3459 0.0
Ahg929176 jgi|Araly1|929176|scaffold_301633.1 1714 0.0
> Ahg923979 jgi|Araly1|923979|scaffold_105260.1
Length=2194
Score = 3459 bits (1873), Expect = 0.0
Identities = 2069/2167 (95%), Gaps = 0/2167 (0%)
Strand=Plus/Plus
Query 297 GAGTTTCAATGGTGGTAGCAACGACCATAGCGCTTTACGCGAGTCCAGCGAGCACTGTAT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 GAGTTTCAATGGTGGTAGCAACGACCATAGCGCTTTACGCGAGTCCAGCGAGCACTGTAT 76
Query 357 GTTCCACAGCTCACCAAATCAACGCTCATATCTCATGTGACCTCGATCTGAACTCTAGAT 416
|||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 77 GTTCCACAGCTCACCAGATCAACGCTCATATCTCTTGTGATCTCGATCTGAACTCTAGAT 136
Query 417 CTTCATCGGCGTCTTCTTCCACGAGTTCGCCGACTATCGGAGGTCTCTCTTTGCTTTTCT 476
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 137 CTTCATCGGCGTCTTCTTCGACGAGTTCTCCGACTATCGGAGGTCTCTCTTTGCTTTTCT 196
Query 477 CCGGCGCTTCCGTCAAATCATCTTCCTCTTCTTCCTCATCGCATCCATCCGTAGGAGAGG 536
|||||||||||||||||||||| || ||||||||||||||||||||| | ||||||||||
Sbjct 197 CCGGCGCTTCCGTCAAATCATCGTCGTCTTCTTCCTCATCGCATCCAACGGTAGGAGAGG 256
Query 537 AATTAGCTTCAATACGCCATGATCGTAGCGAGGATCGGACCTTAAGCGGATCCTTCTGTT 596
|||||||||||||||| |||||||| ||||||||||| || |||||||| ||||| ||||
Sbjct 257 AATTAGCTTCAATACGTCATGATCGAAGCGAGGATCGAACTTTAAGCGGCTCCTTGTGTT 316
Query 597 ATTCTCCGAGCAAATTCATTGGTTCTTCATACCTAAAACGAGATCATCAAAGCCCTGTCT 656
||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct 317 ATTCTCCGAGCAAATTCATCGGTTCTTCATATCTTAAACGAGATCACCAAAGCCCTGTCT 376
Query 657 CGGTGCTTCACGGTCCAATTTCATCTGGTAACAGTCCTCCGATGAGGATTTCACGCGATC 716
||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 377 CGGTGCTTCTCGGTCCAATTTCATCTGGTAGCAGTCCTCCGATGAGAATTTCACGCGATC 436
Query 717 GGAACTTAGATGGTGGATCTGCTCTTCGTGTAGGATCTAGCAGATTGTTCAATGGTTTCG 776
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 437 GGAACTTAGATGGTGGATCTTCTCTTCGTGTAGGATCTAGCAGATTGTTCAATGGTTTCG 496
Query 777 TCAGGAAAGCGATAGGTTCATGTGTTGATTACGATACAGACTCTGTTCTTGTCGATGAGC 836
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TCAGGAAAGCGATAGGTTCTTGTGTTGATTACGATACAGACTCTGTTCTTGTCGATGAGC 556
Query 837 AGCTACCGTTTACCATGGACGATGGTTTCGAAGGAGAAAGAAGACAACCATATGCTAGGG 896
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 557 AGCTACCGTTTACCATGGACGATGGTTACGAAGGAGAAAGAAGACATCCATATGCTAGGG 616
Query 897 ATTTGCTTAGACGTGCTCAATTGAAACACAAAATCTTCGAAGATGAATCTGTGATCAAAG 956
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 617 ATTTGCTTAGGCGTGCTCAATTGAAACATAAAATCTTCGAAGATGAATCTGTGATCAAAG 676
Query 957 CATTTTACGAAGCTGAGAAAGCTCATAGGGGACAGATGAGAGCAACTGGTGATCCATACC 1016
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct 677 CATTTTACGAAGCTGAGAAAGCTCATAGAGGACAGATGAGAGCAAATGGTGATCCTTACC 736
Query 1017 TGCAACATTGTGTGGAGACTGCAATGTTGTTGGCTGACATTGGAGCTAATTCGACTGTTG 1076
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 737 TGCAACATTGTGTTGAGACTGCGATGTTGTTAGCTGACATTGGAGCTAATTCGACTGTTG 796
Query 1077 TTGTAGCTGGAATTTTACATGATACTTTAGACGATTCGTTTATGAGCTATGATTATATTC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 TTGTAGCTGGAATTTTACATGATACTTTAGACGATTCGTTTATGAGCTATGATTATATTC 856
Query 1137 TCAGAACTTTTGGATCAGGAGTTGCTGATCTTGTGGAAGGGGTCTCTAAGCTGAGCCAGT 1196
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 857 TCAGAACTTTTGGATCAGGAGTTGCTGATCTTGTGGAAGGGGTGTCTAAGCTTAGCCAAT 916
Query 1197 TAAGTAAACTTGCTCGGGAGAACAATACCGCTTGTAAAACCGTAGAAGCAGATCGTTTGC 1256
||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 917 TAAGTAAACTTGCTCGGGAAAACAATACGGCTTGTAAAACCGTTGAAGCAGATCGTTTGC 976
Query 1257 ACACTATGTTTCTTGCAATGGCAGACGCCAGAGCTGTTCTTATAAAGTTAGCTGATCGGT 1316
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 977 ACACTATGTTTCTTGCAATGGCAGATGCGAGAGCTGTTCTTATAAAGTTAGCTGATCGGT 1036
Query 1317 TACACAACATGATGACTCTATATGCTTTGCCACCAGTGAAGCGGCAAAGGTTTGCCAAAG 1376
||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||
Sbjct 1037 TACACAACATGATGACTCTCTATGCTTTGCCACCAGTGAAGCAGCAAAGGTTTGCTAAAG 1096
Query 1377 AAACTCTAGAGATATTTGCGCCTTTGGCTAATCGTTTGGGAATTTCTAGCTGGAAAGTTA 1436
| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1097 AGACTCTCGAGATATTTGCGCCTTTGGCTAATCGTTTGGGAATCTCTAGCTGGAAAGTTG 1156
Query 1437 AGCTTGAAAATCTGTGTTTTAAGCATCTCCATCCTGATCAGCACCATGAGATGTCCGATA 1496
||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1157 AGCTTGAAAATATGTGTTTCAAGCATCTCTATCCTGATCAGCACCATGAGATGTCTGATA 1216
Query 1497 TGCTTGAGGATTCATTCGATGAAGCTATGATTACTTCTGCGATTGAGAAATTGGAGCAAG 1556
||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1217 TGCTTGAGGATTCATTCAATGAAGCTATGATTACTTCCGCGATTGGGAAATTGGAGCAAG 1276
Query 1557 CGCTTAAGAAAGAAGGCATCTCTTACCATGTTGTCTCTGGACGGCACAAGAGTTTGTATA 1616
||||||||||||||||||| |||||||||||| | |||||||| |||||||| |||||||
Sbjct 1277 CGCTTAAGAAAGAAGGCATTTCTTACCATGTTCTATCTGGACGACACAAGAGCTTGTATA 1336
Query 1617 GTATCTACTGCAAGATGTTGAAGAAAAAGCTAACCATGGATGAAATTCATGATATTCATG 1676
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1337 GTATCTACTGCAAGATGTTGAAGAAAAAGCTAACCATGGATGAAATCCATGATATTCATG 1396
Query 1677 GCTTACGTTTGATTGTTGACAATGAGAAAGATTGTTACAAGGCCTTGGGAGTAGTTCACA 1736
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1397 GCTTACGTTTGATTGTTGACAATGAGAAAGATTGTTACAAGGCCTTAGGAGTAGTTCACA 1456
Query 1737 AGCTATGGTCTGAAGTTCCTGGAAAGCTGAAAGATTACATTTCTCATCCCAAGTTCAACG 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 AGCTATGGTCTGAAGTTCCTGGAAAGCTGAAAGATTACATTTCTCATCCCAAGTTCAACG 1516
Query 1797 GGTACCAATCTTTGCATACTGTAGTGATGGGTGATGGAACTATTCCGCTGGAAGTTCAAA 1856
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1517 GGTACCAATCTTTGCATACTGTAGTAATGGGTGATGGAACTATTCCGCTTGAAGTTCAAA 1576
Query 1857 TACGGACAAAGGAGATGCATTTGCAAGCTGAATTTGGGTTTGCAGCTCACTGGAGATACA 1916
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 TACGAACAAAGGAGATGCATTTGCAAGCTGAATTTGGGTTTGCAGCTCACTGGAGATACA 1636
Query 1917 AGGAAGGTGACTGCAAACACTCATCGTTTGTGCTTCAAATGGTTGAATGGGCAAGATGGG 1976
|||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1637 AGGAAGGTGACTGCAAGCATTCATCATTTGTGCTTCAGATGGTTGAATGGGCAAGATGGG 1696
Query 1977 TTGTGACCTGGCATTTTGAAACCATGAGCAAAGACGGATCGTCGATCTGCTCTTCTGAGC 2036
| |||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||||
Sbjct 1697 TCGTGACCTGGCATTTCGAAACCATGAGCAAAGATAGATCCTCGATCTGCTCTTCCGAGC 1756
Query 2037 CCTTGTGCAGTTTCCCGTCTCACGCAGAAGACTGTCCGTTTTCATATAAGCCTAGTGGTA 2096
| || |||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1757 CTTTATGCAGTTTCCCGTCTCACGCTGAAGACTGTCCGTTTTCATATAAGCCTAATGGTA 1816
Query 2097 ACCAAGAAGGACCAGTCTATGTGATTGTAATCGAAAATGAGAAGATGACTGTGCAAGAGT 2156
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1817 ACCAAGAAGGACCAGTCTATGTCATTGTAATCGAAAATGAGAAGATGACTGTGCAAGAGT 1876
Query 2157 TTCCCGAGAATTCTACCGTGTCGGACCTGTTACGCAGAGCAGGACCAGGGAGCTCGAGAT 2216
|||||| |||||| || || |||||||||||| |||||||||||||||||||||||||||
Sbjct 1877 TTCCCGCGAATTCCACAGTCTCGGACCTGTTAAGCAGAGCAGGACCAGGGAGCTCGAGAT 1936
Query 2217 GGTCAATGTACAGCATCCCGGCAAAGGAAGAGCTAAGGCCAAGACTTAACCAGACACCTG 2276
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1937 GGTCAATGTACAGCATCCCGGCAAAGGAAGAGCTAAGGCCAAGACTAAACCAGACACCTG 1996
Query 2277 TAAGTGATCTGAAATGCAAGCTGAAGATGGGAGATGTGGTGGAGCTGACTCCAGCCATAC 2336
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1997 TAAATGATCTGAAATGCAAGCTGAAGATGGGAGATGTGGTGGAGCTGACTCCAGCTATAC 2056
Query 2337 CTGACAAGTCTCTGACTGAATACAGAGAGGAAATTCAGCGGATGTATGATCGAGGGCTTG 2396
|||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||
Sbjct 2057 CTGACAAGTCTCTGACTGAATACAGAGAAGAGATTCAACGAATGTATGATCGAGGGCTTG 2116
Query 2397 CGTTTTCACGGCCTCACCGTGCAGCTACTGGTACCATGGTTGGCTGGGGAAGCTAACTGA 2456
|||||||||| ||||||||||||||| | |||||||||||||||||||| ||||||| ||
Sbjct 2117 CGTTTTCACGCCCTCACCGTGCAGCTGCGGGTACCATGGTTGGCTGGGGGAGCTAACAGA 2176
Query 2457 TTCTCTT 2463
|||||||
Sbjct 2177 TTCTCTT 2183
> Ahg929176 jgi|Araly1|929176|scaffold_301633.1
Length=2187
Score = 1714 bits (928), Expect = 0.0
Identities = 1767/2160 (82%), Gaps = 106/2160 (5%)
Strand=Plus/Plus
Query 303 CAATGGTGGTAGCAACGACCATAGCGCTTTACGCGAGTCCAGCGAGCA-CTGTATGTTCC 361
|||||||||| || ||||| ||||||||||||||||| ||| | || | | || ||||||
Sbjct 21 CAATGGTGGTGGCGACGACTATAGCGCTTTACGCGAGCCCACCAAGTAGC-GTTTGTTCC 79
Query 362 ACAGCTCACCAAATCAACGCTCATATCTCATGTGACCTCGATCTGAACTCTA-GATCTTC 420
|| || || | ||| | | ||||||||||| |||||||||| ||| | || |||
Sbjct 80 AC-GC-CA-C--ATC-A-G-----ATCTCATGTGATCTCGATCTGACCTCCAGGA-GTTC 126
Query 421 ATCGGCGTCTTCTTCCA-CGAGT--TCG-C-C-G--A-C--T-ATCGGAGGTCTCTCTTT 468
|| |||| |||||| | | ||| | | | | | | |||||||||||||||
Sbjct 127 GTCAACGTCACCTTCCATGGTTTCCTCGCCGCAGAAACCAATCGTCGGAGGTCTCTCTTC 186
Query 469 GCTTTTCTCCGGCGCTTCCGTCAAATCATCTTCCTCTTCTTCCTCATCGCATCCATCCGT 528
|||||||||||||| ||||||||||| || | || |||| ||||| | | || |||
Sbjct 187 ACTTTTCTCCGGCGCATCCGTCAAATCTTCAGCTTCCTCTTGCTCAT-AC-T-CAACCGG 243
Query 529 AGGAGAGGAATTAGCTTCAATACGCCATGATCGTAGCGA-G--------GATCGGACCTT 579
|| ||| || || ||||| ||||| ||||||| || || | |||| || |||
Sbjct 244 AGTAGATGAGTTTTCTTCAGTACGCTATGATCGGAGTGATGATTTAAAAGATCTGAGCTT 303
Query 580 AAGCGGATCCTTCTGTTATTCTCCGAGC-AAATTCAT-TG-GTTCTTCATACCTAAAACG 636
||| | ||||| |||||||||||| || ||||| | || |||||| || || | |||
Sbjct 304 GAGCAGCTCCTTTTGTTATTCTCCG-GCGAAATT--TGTGAATTCTTCGTATCTTAGACG 360
Query 637 AGATCAT-CAAAGCCCTGTCTCGGTGCTTCACGGTCCAATTTCATCTGGTAACAGTCCTC 695
||||| | || || ||| |||| ||||||||||||||| |||| | | || || ||||
Sbjct 361 AGATC-TCCAGAGTCCTATCTCTGTGCTTCACGGTCCAGTTTCTTGTAGTTGTAGCCCTC 419
Query 696 CGATGAGGATTTCACGCGATCGGAACT-TAGATGGTGGATCTGCTCTTCGTGTAGGATCT 754
||||||| || || || |||||||| | | || ||| || | | ||||| ||||| ||
Sbjct 420 CGATGAGAATGTCTCGTGATCGGAA-TCTCGA---TGGCTC-G-T-TTCGTTTAGGAGCT 472
Query 755 AGCAGATTGTTCAATGGTTTCGTCAGGAAAGCGATAGGTTCATGTGTTGATTACG-A-T- 811
|| ||||||||||||||||||| |||||||| | || |||||||| ||||||| | |
Sbjct 473 AGTGGATTGTTCAATGGTTTCGTAAGGAAAGCTCTTGGATCATGTGTGGATTACGAATTG 532
Query 812 --A-CAGACTCTGTTCTTGTCGATGAGCAGCTACCGTTTACC-ATGGACGATGGTTTCGA 867
| | || |||||||| || ||| | ||||| ||||| || ||||| |||||||| |
Sbjct 533 GGATCGGATTCTGTTCTCGTTGAT--G-AGCTAACGTTT-CCTATGGAGGATGGTTTTG- 587
Query 868 AGG-AGA-AAGAAGACAA-CCATATGCTAGGGATTTGCTT-AGACGTGCTCAATTGAAAC 923
|| || | | ||| || |||||||||||||||||| || |||||||||||||||| ||
Sbjct 588 GGGTTGATACG-AGA-AAGCCATATGCTAGGGATTTG-TTAAGACGTGCTCAATTGAGAC 644
Query 924 ACAAAATCTTCGAAGATGAATCTGTGATCAAAGCATTTTACGAAGCTGAGAAAGCTCATA 983
|||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 645 ACAAAATCTTTGAAGATGAGTCTGTGATCAAAGCATTTTATGAAGCAGAGAAAGCTCATA 704
Query 984 GGGGACAGATGAGAGCAACTGGTGATCCATACCTGCAACATTGTGTGGAGACTGCAATGT 1043
| |||||||||||||| | ||||||||| ||||| ||||||||||| || ||||| ||||
Sbjct 705 GAGGACAGATGAGAGCTAGTGGTGATCCTTACCTTCAACATTGTGTTGACACTGCTATGT 764
Query 1044 TGTTGGCTGACATTGGAGCTAATTCGACTGTTGTTGTAGCTGGAATT-TTACATGATACT 1102
|||||||| | || |||||||| |||||||||||||| ||||| || || |||||||||
Sbjct 765 TGTTGGCTAATATCGGAGCTAACTCGACTGTTGTTGTTGCTGGGCTTCTT-CATGATACT 823
Query 1103 TTAGACGATTCGTTTATGAGCTATGATTATATTCTCAG-AACTTTTGGATCAGGAGTTGC 1161
| || ||||| || ||||||||||||||||||||||| ||| |||||| ||||||| ||
Sbjct 824 ATGGATGATTCATTCATGAGCTATGATTATATTCTCAGAAAC-TTTGGAGCAGGAGTGGC 882
Query 1162 TGATCTT-GTGGAAGGGGTCTCTAAGCTGAGCCAGTTAAGTAAACTTGCTCGGGAGAACA 1220
|||| || || |||||||| || ||||| ||||| || || ||||| ||| | |||||||
Sbjct 883 TGAT-TTGGTCGAAGGGGTTTCGAAGCTTAGCCAATTGAGCAAACTCGCTAGAGAGAACA 941
Query 1221 ATACCGCTTGTAAAACCGTAGAAGCAGATCGTTTGCACACTATGTTTCTTGCAATGGCAG 1280
|||| || |||||||| || ||||||||||| |||||||| |||||||||||||||||||
Sbjct 942 ATACGGCGTGTAAAACTGTTGAAGCAGATCGATTGCACACAATGTTTCTTGCAATGGCAG 1001
Query 1281 ACGCCAGAGCTGTTCTTATAAAGTTAGCTGATCGGTTACACAACATGATGACTCTATATG 1340
| || ||||||||||||||||| | |||||||| ||||||||||||| ||| || || |
Sbjct 1002 ATGCAAGAGCTGTTCTTATAAAACTGGCTGATCGATTACACAACATGAAGACGCTTTACG 1061
Query 1341 CTTTG-CCACCAGTGAAGCGGCAAAGGTTTGCCAAAGAAAC-TCTAGAGATATTTGCGCC 1398
||||| || |||||||||| ||| |||||||| ||||| || | | || ||||| || ||
Sbjct 1062 CTTTGTCC-CCAGTGAAGCAGCAGAGGTTTGCTAAAGAGACGT-TGGAAATATTCGCACC 1119
Query 1399 TTTGGCTAATCGTTTGGGAATTTCTAGCTGGAAAGTTAAGCTTGAAAATCTGTGTTTTAA 1458
|||||||||||||||||||| |||| |||||||||| ||||||||||||| ||||| ||
Sbjct 1120 CTTGGCTAATCGTTTGGGAATCTCTACCTGGAAAGTTCAGCTTGAAAATCTTTGTTTCAA 1179
Query 1459 GCATCTCCATCCTGATCAGCACCATGAGATGTCCGA-TATGCTTGAGGATTCATTCGATG 1517
| |||| | || | ||||| ||||||||| | | ||||||||||||||||||||||
Sbjct 1180 GTATCTTTACCCAAACCAGCATAATGAGATGT-CAACCATGCTTGAGGATTCATTCGATG 1238
Query 1518 AAGCTATGATTACTTCTGCGATTGAGAAATTGGAGCAAGCGCTTAAGAAAGAAGGCATCT 1577
|||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||| |
Sbjct 1239 AAGCCATGATTACTTCTGCAATAGAGAAATTGGAGCAAGCTCTTAAGAAAGAAGGCATTT 1298
Query 1578 CTTACCATGTTGTCTCTGGACGGCACAAGAGTTTGTATAGTATCTACTGCAAGATGTTGA 1637
|||| |||||| | | ||| ||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 1299 CTTATCATGTTCTGTGTGGCCGGCACAAGAGCTTGTATAGTATTTACAGCAAGATGTTGA 1358
Query 1638 AGAAAAAGCTAACCA-TGGATGAAATTCATGATATTCATGGCTTACGTTTGATTGTTGAC 1696
|||||||||||| || |||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1359 AGAAAAAGCTAA-CAGTGGATGAAATTCATGACATTCATGGGTTACGTTTGATTGTTGAC 1417
Query 1697 AATG-AGAAAGATTGTTACAAGGCCTTGGGAGTAGTTCACAAGC-TATGGTCTGAAGTTC 1754
|| | || |||||||||||||||||| ||||||||||| ||| |||||||||||||||
Sbjct 1418 AACGAAG-GAGATTGTTACAAGGCCTTAGGAGTAGTTCA-TAGCTTATGGTCTGAAGTTC 1475
Query 1755 CTGGAAAGCTGAAAGATTACATTTCTCATCCCAAGTTCAACGGGTACCAATCTTTGCATA 1814
||||||||||||| |||||||| |||||||||| ||||||||||| ||||||||||| |
Sbjct 1476 CTGGAAAGCTGAAGGATTACATAACTCATCCCAAATTCAACGGGTATCAATCTTTGCACA 1535
Query 1815 CTGTAGTGATGGGTGATGGAACTATTCCG-CTGGAAGTTCAAATACGGACAAAGGAGATG 1873
| |||||||||| ||||||| | ||| || ||||| |||||||| ||| ||||||||
Sbjct 1536 CGGTAGTGATGGACAATGGAAC-AGTCCCACTTGAAGTCCAAATACGTACACAGGAGATG 1594
Query 1874 CATTTGCAAGCTGAATTTGGGTTTGCAGCTCACTGGAGATACAAGGAAGGTGACTGCAAA 1933
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1595 CATTTGCAAGCAGAATTTGGGTTTGCAGCTCATTGGAGGTACAAGGAAGGTGACTGCAAA 1654
Query 1934 CACTCATCGTTTGTGCTTCAAATGGTTGAATGGGCAAGATGGGTTGTGACCTGGCATTTT 1993
|||| |||||||||||||| |||||||||||||| | ||||| || || |||||||
Sbjct 1655 TACTCTTCGTTTGTGCTTCAGATGGTTGAATGGGCTCGGTGGGTCGTAACATGGCATTGC 1714
Query 1994 GAAACCATGAGCAAAGACGGATCGTCGATCTGCTCTTCTGAGCCCTTG--------T-GC 2044
||| | |||||||||||| |||| || || | |||||||| || | | ||
Sbjct 1715 GAAGCAATGAGCAAAGACCGATCTTCCATAAGTTCTTCTGATTCCATAAAACCCCCTTGC 1774
Query 2045 A-GTTTCCCGTCTCACGCAGAAGACTGTCCGTTTTCATATAAGCCTAGTGGTAACCAAGA 2103
| |||||| ||||||| | || ||||| ||| ||| || ||||||| ||| ||| ||
Sbjct 1775 AAGTTTCC-GTCTCACTCCGAGGACTGCCCGGCTTCTTACAAGCCTAACAGTAGCCAGGA 1833
Query 2104 AGGACCAGTCTATGTGATTGTAATCGAAAATGAGAAGATGACTGTGCAAGAGTTTCCCGA 2163
|||||||||||||| || || ||||||||||| |||||| |||||||||| ||||| |
Sbjct 1834 CGGACCAGTCTATGTCATCGTGATCGAAAATGACAAGATGTCTGTGCAAGAATTTCCAGC 1893
Query 2164 GAATTCTACCGTGTCGGACCTGTTACGCAGAGCAGGACCAGGGAGCTCGAGATGGTCAAT 2223
|| |||||| || ||||| ||| || || | || || |||||||||||||| ||||| ||
Sbjct 1894 GAGTTCTACAGTTTCGGATCTGCTAAGCCGGGCGGGGCCAGGGAGCTCGAGGTGGTCCAT 1953
Query 2224 GTACAGCATCCCGGCAAAGGAAGAGCTAAGGCCAAGACTTAACCAGACACCTGTAAGTGA 2283
||| |||| || ||||||||||| ||||||||||| || ||||| | ||||||||||||
Sbjct 1954 GTATGGCATACCAGCAAAGGAAGAACTAAGGCCAAGGCTGAACCAAAGACCTGTAAGTGA 2013
Query 2284 TCTGAAATGCAAGCTGAAGATGGGAGATGTGGTGGAGCTGACTCCAGCCATACCTGACAA 2343
|| || || |||||||||||||| ||||||||||||||||||||| | || |||||| |
Sbjct 2014 CCTCAAGTGGAAGCTGAAGATGGGTGATGTGGTGGAGCTGACTCCAACAATTCCTGACGA 2073
Query 2344 GTCTCTGACTGAATACAGAGAGGAAATTCAGCGGATGTATGATCGAGGGCTTGCGTTTTC 2403
||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||||||
Sbjct 2074 GTCTCTGACTGAATACAGAGAAGAGATTCAACGGATGTATGATCGAGGACTCGCGTTTTC 2133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99301268715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5