BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54140.1
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474545 jgi|Araly1|474545|fgenesh2_kg.1__4499__AT1G54140.1 1031 0.0
Ahg474557 jgi|Araly1|474557|fgenesh2_kg.1__4511__AT1G54140.1 1026 0.0
> Ahg474545 jgi|Araly1|474545|fgenesh2_kg.1__4499__AT1G54140.1
Length=674
Score = 1031 bits (558), Expect = 0.0
Identities = 626/658 (95%), Gaps = 7/658 (1%)
Strand=Plus/Plus
Query 5 TTTCCCGATTCCTCGCCGCCGTTCATCAATCTCTCCGTCGTGTTTCTGCCACT-AGCTCT 63
||| ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 2 TTTTCCGATTCCTCGCCGCCGTTCATCAATCTCTCCGTCGTGTTTCTGCCA-TCACCTCT 60
Query 64 CCACCAAACTTTCTCTCTCGCATTAGTTGTTTAGGGATAAACATGGCAGGAGAAGGTGAA 123
|||||||| |||||||||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct 61 CCACCAAAATTTCTCTCTCGCGTTAGTTGTTTAGGGATAAAAATGGCTGGAGAAGGTGAA 120
Query 124 GAAGATGTACCTAGAGATGCTAAGATTGTGAAATCTCTGCTTAAGTCGATGGGTGTAGAA 183
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 121 GAAGATGTACCTAGAGATGCTAAGACTGTGAAATCTTTGCTTAAGTCGATGGGTGTAGAA 180
Query 184 GACTACGAGCCTCGTGTGATACATCAGTTTCTGGAGTTATGGTACCGGTATGTGGTCGAA 243
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 GACTACGAGCCTCGTGTGATACACCAGTTTCTGGAGTTATGGTACCGGTATGTGGTCGAA 240
Query 244 GTGTTGACAGATGCTCAGGTTTACTCAGAGCATGCTAGCAAACCCAACATTGACTGTGAT 303
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 241 GTCTTGACAGATGCTCAGGTTTACTCAGAGCATGCTAGCAAATCCAACATTGACTGCGAT 300
Query 304 GATGTGAAGCTCGCTATTCAATCCAAAGTTAATTTCAGCTTCTCACAGCCTCCTCCAAGA 363
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GATGTCAAGCTCGCTATTCAATCCAAAGTTAATTTCAGCTTCTCACAGCCACCTCCAAGA 360
Query 364 GAGGTTCTGCTT-GAGCTTGCTGCAAGTAGGAACAAGATACCTCTGCCAAAATCGATAGC 422
||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 361 GAGGTTCTG-TTAGAGCTTGCTGCAAGCAGGAACAAGATCCCTCTGCCAAAATCGATAGC 419
Query 423 AGGACCCGGTGTTCCACTCCCACCTGAACAGGACACATTGCTGAGCCCAAATTATCAGCT 482
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 AGGACCTGGTGTTCCACTCCCACCTGAACAGGACACATTGCTGAGCCCAAATTACCAGCT 479
Query 483 CGTGATACCGAAGAAGTCGGTTTCAACAGAACCTGAAGAAACCGAGGACGATGAAGAAAT 542
||||||||| |||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 480 CGTGATACCCAAGAAGTCAGTGTCCACAGAACCTGAAGAAACCGAGGACGATGAAGAAAT 539
Query 543 GACAGATCCTGGACAGTCCTCTCAAGAACAACAACAGCAGCAACAACAAACCTCAGACCT 602
||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||
Sbjct 540 GACAGATCCTGGACAGTCCTCTCAAGAACAACA---GCAGCAACAACAAGCATCAGACCT 596
Query 603 TCCAAGCCAAACTCCTCAAAGGGTCTCTTTCCCACTCTCTAGACGACCCAAATAAGTA 660
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 597 TCCAAGCCAAACTCCTCAAAGGGTCTCTTTTCCACTCTCTAGACGACCCAAATAAGTA 654
> Ahg474557 jgi|Araly1|474557|fgenesh2_kg.1__4511__AT1G54140.1
Length=678
Score = 1026 bits (555), Expect = 0.0
Identities = 626/661 (95%), Gaps = 2/661 (0%)
Strand=Plus/Plus
Query 1 AGTATTTCCCGATTCCTCGCCGCCGTTCATCAATCTCTCCGTCGTGTTTCTGCCACTAGC 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1 AGTCTTTCCCGATTCCTCGCCGCCGTTCATCAATCTCTCCGTCGTGTTTCTGCCATTACC 60
Query 61 TCTCCACCAAACTTTCTCTCTCGCATTAGTTGTTTAGGGATAAACATGGCAGGAGAAGGT 120
||||| ||||||| |||||||||| ||||||||||||||||||| ||||| |||||||||
Sbjct 61 TCTCCTCCAAACTATCTCTCTCGCGTTAGTTGTTTAGGGATAAAAATGGCTGGAGAAGGT 120
Query 121 GAAGAAGATGTACCTAGAGATGCTAAGATTGTGAAATCTCTGCTTAAGTCGATGGGTGTA 180
|||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||
Sbjct 121 GAAGAAGATGTACCTAGACATGCTAAGACTGTGAAATCTTTGCTTAAGTCGATGGGTGTA 180
Query 181 GAAGACTACGAGCCTCGTGTGATACATCAGTTTCTGGAGTTATGGTACCGGTATGTGGTC 240
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 181 GAAGACTACGAGCCTCGTGTGATTCACCAGTTTCTGGAGTTATGGTACCGGTATGTGGTC 240
Query 241 GAAGTGTTGACAGATGCTCAGGTTTACTCAGAGCATGCTAGCAAACCCAACATTGACTGT 300
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 GAAGTCTTGACAGATGCTCAGGTTTACTCAGAGCATGCTAGCAAATCCAACATTGACTGC 300
Query 301 GATGATGTGAAGCTCGCTATTCAATCCAAAGTTAATTTCAGCTTCTCACAGCCTCCTCCA 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 301 GATGATGTCAAGCTCGCTATTCAATCCAAAGTTAATTTCAGCTTCTCACAGCCACCTTCA 360
Query 361 AGAGAGGTTCTGCTT-GAGCTTGCTGCAAGTAGGAACAAGATACCTCTGCCAAAATCGAT 419
||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 361 AGAGAGGTTCT-ATTAGAGCTTGCTGCAAGCAGGAACAAGATCCCTCTGCCAAAATCGAT 419
Query 420 AGCAGGACCCGGTGTTCCACTCCCACCTGAACAGGACACATTGCTGAGCCCAAATTATCA 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 AGCAGGACCTGGTGTTCCACTCCCACCTGAACAGGACACATTGCTGAGCCCAAATTACCA 479
Query 480 GCTCGTGATACCGAAGAAGTCGGTTTCAACAGAACCTGAAGAAACCGAGGACGATGAAGA 539
|||||||||||| |||||||| || || |||||||||||||||||||| |||||||||||
Sbjct 480 GCTCGTGATACCCAAGAAGTCAGTGTCCACAGAACCTGAAGAAACCGAAGACGATGAAGA 539
Query 540 AATGACAGATCCTGGACAGTCCTCTCAAGAACAACAACAGCAGCAACAACAAACCTCAGA 599
|||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 540 AATGACAGATCCTGGACAGTCCTCTCAAGAACAACAACAGCAACAACAACAAGCATCAGA 599
Query 600 CCTTCCAAGCCAAACTCCTCAAAGGGTCTCTTTCCCACTCTCTAGACGACCCAAATAAGT 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 CCTTCCAAGCCAAACTCCTCAAAGGGTCTCTTTTCCACTCTCTAGACGACCCAAATAAGT 659
Query 660 A 660
|
Sbjct 660 A 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28249081497
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5