BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G54140.1 Length=766 Score E Sequences producing significant alignments: (Bits) Value Ahg474545 jgi|Araly1|474545|fgenesh2_kg.1__4499__AT1G54140.1 1031 0.0 Ahg474557 jgi|Araly1|474557|fgenesh2_kg.1__4511__AT1G54140.1 1026 0.0 > Ahg474545 jgi|Araly1|474545|fgenesh2_kg.1__4499__AT1G54140.1 Length=674 Score = 1031 bits (558), Expect = 0.0 Identities = 626/658 (95%), Gaps = 7/658 (1%) Strand=Plus/Plus Query 5 TTTCCCGATTCCTCGCCGCCGTTCATCAATCTCTCCGTCGTGTTTCTGCCACT-AGCTCT 63 ||| ||||||||||||||||||||||||||||||||||||||||||||||| | | |||| Sbjct 2 TTTTCCGATTCCTCGCCGCCGTTCATCAATCTCTCCGTCGTGTTTCTGCCA-TCACCTCT 60 Query 64 CCACCAAACTTTCTCTCTCGCATTAGTTGTTTAGGGATAAACATGGCAGGAGAAGGTGAA 123 |||||||| |||||||||||| ||||||||||||||||||| ||||| |||||||||||| Sbjct 61 CCACCAAAATTTCTCTCTCGCGTTAGTTGTTTAGGGATAAAAATGGCTGGAGAAGGTGAA 120 Query 124 GAAGATGTACCTAGAGATGCTAAGATTGTGAAATCTCTGCTTAAGTCGATGGGTGTAGAA 183 ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 121 GAAGATGTACCTAGAGATGCTAAGACTGTGAAATCTTTGCTTAAGTCGATGGGTGTAGAA 180 Query 184 GACTACGAGCCTCGTGTGATACATCAGTTTCTGGAGTTATGGTACCGGTATGTGGTCGAA 243 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 181 GACTACGAGCCTCGTGTGATACACCAGTTTCTGGAGTTATGGTACCGGTATGTGGTCGAA 240 Query 244 GTGTTGACAGATGCTCAGGTTTACTCAGAGCATGCTAGCAAACCCAACATTGACTGTGAT 303 || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 241 GTCTTGACAGATGCTCAGGTTTACTCAGAGCATGCTAGCAAATCCAACATTGACTGCGAT 300 Query 304 GATGTGAAGCTCGCTATTCAATCCAAAGTTAATTTCAGCTTCTCACAGCCTCCTCCAAGA 363 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 301 GATGTCAAGCTCGCTATTCAATCCAAAGTTAATTTCAGCTTCTCACAGCCACCTCCAAGA 360 Query 364 GAGGTTCTGCTT-GAGCTTGCTGCAAGTAGGAACAAGATACCTCTGCCAAAATCGATAGC 422 ||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 361 GAGGTTCTG-TTAGAGCTTGCTGCAAGCAGGAACAAGATCCCTCTGCCAAAATCGATAGC 419 Query 423 AGGACCCGGTGTTCCACTCCCACCTGAACAGGACACATTGCTGAGCCCAAATTATCAGCT 482 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 420 AGGACCTGGTGTTCCACTCCCACCTGAACAGGACACATTGCTGAGCCCAAATTACCAGCT 479 Query 483 CGTGATACCGAAGAAGTCGGTTTCAACAGAACCTGAAGAAACCGAGGACGATGAAGAAAT 542 ||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||| Sbjct 480 CGTGATACCCAAGAAGTCAGTGTCCACAGAACCTGAAGAAACCGAGGACGATGAAGAAAT 539 Query 543 GACAGATCCTGGACAGTCCTCTCAAGAACAACAACAGCAGCAACAACAAACCTCAGACCT 602 ||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| Sbjct 540 GACAGATCCTGGACAGTCCTCTCAAGAACAACA---GCAGCAACAACAAGCATCAGACCT 596 Query 603 TCCAAGCCAAACTCCTCAAAGGGTCTCTTTCCCACTCTCTAGACGACCCAAATAAGTA 660 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 597 TCCAAGCCAAACTCCTCAAAGGGTCTCTTTTCCACTCTCTAGACGACCCAAATAAGTA 654 > Ahg474557 jgi|Araly1|474557|fgenesh2_kg.1__4511__AT1G54140.1 Length=678 Score = 1026 bits (555), Expect = 0.0 Identities = 626/661 (95%), Gaps = 2/661 (0%) Strand=Plus/Plus Query 1 AGTATTTCCCGATTCCTCGCCGCCGTTCATCAATCTCTCCGTCGTGTTTCTGCCACTAGC 60 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1 AGTCTTTCCCGATTCCTCGCCGCCGTTCATCAATCTCTCCGTCGTGTTTCTGCCATTACC 60 Query 61 TCTCCACCAAACTTTCTCTCTCGCATTAGTTGTTTAGGGATAAACATGGCAGGAGAAGGT 120 ||||| ||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||| Sbjct 61 TCTCCTCCAAACTATCTCTCTCGCGTTAGTTGTTTAGGGATAAAAATGGCTGGAGAAGGT 120 Query 121 GAAGAAGATGTACCTAGAGATGCTAAGATTGTGAAATCTCTGCTTAAGTCGATGGGTGTA 180 |||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||| Sbjct 121 GAAGAAGATGTACCTAGACATGCTAAGACTGTGAAATCTTTGCTTAAGTCGATGGGTGTA 180 Query 181 GAAGACTACGAGCCTCGTGTGATACATCAGTTTCTGGAGTTATGGTACCGGTATGTGGTC 240 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 181 GAAGACTACGAGCCTCGTGTGATTCACCAGTTTCTGGAGTTATGGTACCGGTATGTGGTC 240 Query 241 GAAGTGTTGACAGATGCTCAGGTTTACTCAGAGCATGCTAGCAAACCCAACATTGACTGT 300 ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 241 GAAGTCTTGACAGATGCTCAGGTTTACTCAGAGCATGCTAGCAAATCCAACATTGACTGC 300 Query 301 GATGATGTGAAGCTCGCTATTCAATCCAAAGTTAATTTCAGCTTCTCACAGCCTCCTCCA 360 |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 301 GATGATGTCAAGCTCGCTATTCAATCCAAAGTTAATTTCAGCTTCTCACAGCCACCTTCA 360 Query 361 AGAGAGGTTCTGCTT-GAGCTTGCTGCAAGTAGGAACAAGATACCTCTGCCAAAATCGAT 419 ||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 361 AGAGAGGTTCT-ATTAGAGCTTGCTGCAAGCAGGAACAAGATCCCTCTGCCAAAATCGAT 419 Query 420 AGCAGGACCCGGTGTTCCACTCCCACCTGAACAGGACACATTGCTGAGCCCAAATTATCA 479 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 420 AGCAGGACCTGGTGTTCCACTCCCACCTGAACAGGACACATTGCTGAGCCCAAATTACCA 479 Query 480 GCTCGTGATACCGAAGAAGTCGGTTTCAACAGAACCTGAAGAAACCGAGGACGATGAAGA 539 |||||||||||| |||||||| || || |||||||||||||||||||| ||||||||||| Sbjct 480 GCTCGTGATACCCAAGAAGTCAGTGTCCACAGAACCTGAAGAAACCGAAGACGATGAAGA 539 Query 540 AATGACAGATCCTGGACAGTCCTCTCAAGAACAACAACAGCAGCAACAACAAACCTCAGA 599 |||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| Sbjct 540 AATGACAGATCCTGGACAGTCCTCTCAAGAACAACAACAGCAACAACAACAAGCATCAGA 599 Query 600 CCTTCCAAGCCAAACTCCTCAAAGGGTCTCTTTCCCACTCTCTAGACGACCCAAATAAGT 659 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 600 CCTTCCAAGCCAAACTCCTCAAAGGGTCTCTTTTCCACTCTCTAGACGACCCAAATAAGT 659 Query 660 A 660 | Sbjct 660 A 660 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28249081497 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5