BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54150.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474546 jgi|Araly1|474546|fgenesh2_kg.1__4500__AT1G54150.1 2026 0.0
> Ahg474546 jgi|Araly1|474546|fgenesh2_kg.1__4500__AT1G54150.1
Length=1354
Score = 2026 bits (1097), Expect = 0.0
Identities = 1285/1372 (94%), Gaps = 27/1372 (2%)
Strand=Plus/Plus
Query 15 CCGTGTCTACGACGTTGAAA-TCGAAATTACCACAATGTCCTCGCCGGAGCGTGCTCTCT 73
|||||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||||
Sbjct 1 CCGTGTCTACAACGTTGAAATTGGAAATTACCACTATGTCCTCGCCGGAGCGTGCTCTCT 60
Query 74 TGAATCTATTGACGGACATCGCTCTCTCCTTCGACGGCGCAATCCTCGGACTGACTTTAG 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 TGAATCTATTGACGGACATCGCTCTCTCCTTCGACGGCGCAATCCTCGGACTGACCTTAG 120
Query 134 CTGTTAGCGCCGTCGGTTCTGCTCTCAAGTATGCTTCTACCAACGCCGCGTTGAAGAAGA 193
|| ||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 121 CTATTAGCGCCGTCGGTTCTGCTCTCAAGTATGCCTCTACCAACGCGGCGTTGAACAAGA 180
Query 194 TCAAAGATGCACCCGAAGTCTCCATTTCCGACCTCCGATCACTGCTTCCGGCTTCTGAAG 253
||||||| ||||||||||||||| || |||||||||||||||||||||| | ||||||||
Sbjct 181 TCAAAGAAGCACCCGAAGTCTCCGTTGCCGACCTCCGATCACTGCTTCCAGTTTCTGAAG 240
Query 254 ACAAATCAGAGACTAACGATAACAGGAAGAGCAATGATCAGCGAATCGTTGTGGTTCGCG 313
||||||| |||||||||||| | | | | || | |||||||||||||||||
Sbjct 241 ACAAATCTGAGACTAACGAT--C---ATG-G----GA--A---AATCGTTGTGGTTCGCG 285
Query 314 GAGTCGTCAAACCGAAAATTTCCGGTGATGAGGGTTACAAGAACAACAACGTGTTAATCT 373
||||||| ||||||||| ||||||| |||||| || ||||||||||||||||||||||||
Sbjct 286 GAGTCGTGAAACCGAAATTTTCCGGAGATGAGAGTCACAAGAACAACAACGTGTTAATCT 345
Query 374 CTCCGGAGACTGGAGATAAAGCTCTTATCATTCAGAGAACGCAAACTTATGTGTATAGTG 433
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 346 CTCCGGAGACTGGAGATAAAGCTCTTATCATCCAGAGAACGCAAACTTATGTGTATAGTG 405
Query 434 GATGGAAGAGATTGTTTCAGTCCACTGGTCACCGGTTTATGTTGGAGAGATCATTGCGCA 493
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 406 GATGGAAGAGATTGTTTCAGTCAACTGGTCACCGGTTTATGTTGGAGAGATCAATGCGCA 465
Query 494 AACACGGTGCTGATTTTACGAGAACGGTCCCATTTGTCATTGTTGGAAAGGATCAGCAAT 553
||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 466 AACACGGAGCTGATTTTATGAGAACGGTCCCATTTGTCATTGTTGGAAAGGATCAACAAT 525
Query 554 CGAACTCTAGTTTTGTCGCTGTTAACATGGATGGCTCAAGGCAACCTCTTCCGCTTACCA 613
|| | |||| |||| ||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 526 CGCAGTCTACTTTTCTCGATGTTAACATGGATGGTTCAAGGCAACCTCTTCCGCTTACCA 585
Query 614 CTGTGTATAATCGCTTGCAGCCTATTAATTCTTCGTTTCTTCAAGCCTTTTTGTACCCCG 673
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 586 CTGTGTATAATCGCTTGCAGCCTATTAATTCTTCGTTTCTTCAAGCCTTTTTGTTCCCTG 645
Query 674 ATTATCCTGTTGGTCTGCTTGATATAGAGAAGATTTTACCACCTGGGAAAGATATAACAG 733
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 646 ATTATCCTGTCGGTCTGCTTGATATAGAGAAGATTTTACCTCCTGGGAAAGATATAACAG 705
Query 734 CTGTTGGCATCTACAGTTTTAATAATGGAGTTCCTGAAATCAAATCGTGCCAAGATCTTC 793
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 CTGTTGGCATCTGCAGTTTTAATAATGGAGTTCCTGAAATCAAATCGTGCCAAGATCTTC 765
Query 794 CTTATTTCTTATCAGAGATGACCAAGGACAAGATGATTGAGGACCTTATGGAACAGACCA 853
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 766 CTTATTTCTTATCAGAGATGACCAAGGACAAGATGATTGAGGATCTTATGGATCAGACCA 825
Query 854 ACTTTATATTCTTGGGCAGCGTTATCTTGGGCATTGTGTCTGTTGGCATCCTTAGCTATG 913
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GCTTTATATTCTTTGGCAGTGTTATCTTGGGCATTGTGTCTGTTGGCATCCTTAGCTATG 885
Query 914 CTGCTGTCAGGACCTGGAATAAATGGAAACAATGGAACCATCAGAGAGAACTGCCACAGA 973
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 886 CTGCTGTCAGGACCTGGAATAAATGGAAACAATGGAACCGTCAGAGAGACCTGCCACAGA 945
Query 974 GACCGAACGATTCTGTGGTCGATGATGAACCCGAAGATGCAGATGAAATCCCAGATGGAG 1033
|||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 946 GACCAAACGAACCTGTGGTCGATGATGAACCTGAAGATGCAGATGAAATCCCAGATGGAG 1005
Query 1034 AATTGTGTGTGATCTGCGTGTCAAGAAGGAGAGTACCTGCGTTTATTCCCTGTGGACATG 1093
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1006 AATTGTGTGTGATCTGCGTGACAAGAAGGAGAGTACCTGCGTTTATTCCCTGTGGACATG 1065
Query 1094 TAGTATGTTGCAGGCG-ATGTGCTTCAACCGTGGAACGAGAGTTAAACCCTAAGTGTCCA 1152
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TAGTATGTTGCAGG-GTATGTGCTTCAACCGTGGAACGAGAGTTAAACCCTAAGTGTCCA 1124
Query 1153 GTTTGTCTTCAGAGCATTAGGGGATCTATGCGTGTATATTACTCTTAGTGACCCTGAATC 1212
|||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1125 GTTTGTCTCCAGAGCATTAGGGGATCTATGCGTGTATATTACTCTTAATGACTCTGAATC 1184
Query 1213 TTCTCTCATTGTATGTAATAGGGTAATGCAATTTGTACTCTCAGAGAATCGGAA-GTT-- 1269
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||
Sbjct 1185 TTCTCTCATTGTATGTATTAGGGTAATGCAATTTGAACTCTCAGAGAATCGGAAAGTTTT 1244
Query 1270 AA----CAAAATAGTTTGACAATGATTTGAAAGTTCGTCAAGTCACTCAATATAGAGTGA 1325
|| |||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||
Sbjct 1245 AATTAACAAAATAGTTTGACAATGATTTGAAAGTTCTTCAAGCCACTCTATATTGAGTGA 1304
Query 1326 GAGATTGTAGAGGATATGAAAGCAAAGTTTTTAAAAGGAAGAAATTTTGTAA 1377
||||||| |||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct 1305 GAGATTGCAGAGGATATGAAAGGAAAGTTTT-AAA-GGAAGAAATTTTGTAA 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5