BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54160.1
Length=1462
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914606 jgi|Araly1|914606|Al_scaffold_0001_4860 1458 0.0
Ahg474546 jgi|Araly1|474546|fgenesh2_kg.1__4500__AT1G54150.1 183 2e-45
> Ahg914606 jgi|Araly1|914606|Al_scaffold_0001_4860
Length=921
Score = 1458 bits (789), Expect = 0.0
Identities = 883/928 (95%), Gaps = 8/928 (1%)
Strand=Plus/Plus
Query 291 ATGCAAGTGTTTCAAAGGAAAGAAGATTCATCTTGGGGAAACTCAATGCCT-ACAACAAA 349
|||||||||||||||||||||| | | |||||||||||||||||||| | |||||||
Sbjct 1 ATGCAAGTGTTTCAAAGGAAAG-A-A-TCATCTTGGGGAAACTCAAT-AATGCCAACAAA 56
Query 350 TTCAAATATTCAAGGATCTGAATCTTTCAGCTTGACTAAGGATATGATAATGTCTACAAC 409
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 57 TTCAAATATTCAAGGATCTGAATCTTTTAGCTTGACAAAGGATATGATGATGTCTACAAC 116
Query 410 ACAATTACCCGCGATGAAACATTCGGGTTTGCAGCTGCAAAATCAAGATTCAACCTCATC 469
|||||| |||| || ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 117 ACAATTCCCCGGGACGAAACATTCGGGTTTGCAGCTGCAAGATCAAGATTCAACCTCAAC 176
Query 470 ACAATCTACTGAAGAAGAATCAGGCGGCGGTGAAGTTGCAAGCTTTGGAGAATATAAGCG 529
|||||||||| ||||||||||||||||| |||||||||||||||| | || |||| ||
Sbjct 177 ACAATCTACT---GAAGAATCAGGCGGCGGGGAAGTTGCAAGCTTTGAAAAACATAACCG 233
Query 530 TTATGGATGCAGCATTGTTAATAACAATCTCTCAGGTTACATCGAAAACTTGGGAAAGCC 589
|||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||
Sbjct 234 TTATGGATGCAGCATTGTGAATACCAATCTCTCAGGTTACATCGAAAACCCGGGAAAGCC 293
Query 590 TATTGAAAATTATACTAAGTCAATTACTACCTCGTCGATGGTGTCTCAAGACTCTGTGTT 649
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 294 TATTGAAAATTATACTAAGTCAACTACTACCTCGTCGATGGTGTCTCAAGATTCTGTGTT 353
Query 650 TCCTGCTCCTACTTCTGGTCAAATATCTTGGTCTCTTCAATGTGCTGAAACGTCACATTT 709
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 354 TCCTGCTCCTACTTCTGGTCAAATATCTTGGTCTCTTCAATGTGCTGAAACATCACATTT 413
Query 710 CAATGGTTTCTTGGCTCCTGAATATGCATCAACACCAACGGCGCTGCCACATTTAGAGAT 769
||||||||||||||||||||||||| || || ||||||||| ||||||||||||||||||
Sbjct 414 CAATGGTTTCTTGGCTCCTGAATATACACCAGCACCAACGGTGCTGCCACATTTAGAGAT 473
Query 770 GATGGGTTTGGTTTCTTCAAGAGTGCCATTGCCTCATCACATTCAAGAGAATGAACCAAT 829
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 474 GATGGGTTTGGTTTCTTCAAGAGTGCCATTGCCTCATAACATTCAAGAGAATGAACCAAT 533
Query 830 ATTTGTCAATGCGAAACAGTATCATGCGATTCTCCGTCGCAGGAAGCACCGTGCTAAACT 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 ATTTGTCAATGCGAAACAGTATCATGCGATTCTCCGTCGCAGGAAGCACCGTGCTAAACT 593
Query 890 CGAAGCTCAGAACAAACTCATCAAATGCCGTAAACCGTACCTTCATGAGTCTCGCCATCT 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 CGAAGCTCAGAACAAACTCATCAAATGCCGTAAACCGTACCTTCATGAGTCTCGCCATCT 653
Query 950 TCATGCTTTAAAGAGAGCTAGAGGCTCCGGTGGACGTTTCCTCAATACAAAGAAGCTTCA 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TCATGCTTTAAAGAGAGCTAGAGGCTCCGGTGGACGTTTCCTCAATACAAAGAAGCTTCA 713
Query 1010 AGAATCATCAAACTCACTGTGTTCTTCTCAAATGGCAAATGGACAAAATTTCTCTATGAG 1069
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 714 AGAATCAGCAAACTCACTGTGTTCTTCTCAAATGGCAAATGGACAGAATTTCTCTATGAG 773
Query 1070 CCCTCACGGTGGTGGAAGCGGAATCGGGTCTAGTTCGATCTCACCGAGCTCCAATTCAAA 1129
||||| ||| |||||||||||||||||||||||||||||| ||| |||||||||||| ||
Sbjct 774 CCCTCGCGGGGGTGGAAGCGGAATCGGGTCTAGTTCGATCACACTGAGCTCCAATTCGAA 833
Query 1130 CTGTATCAACATGTTCCAAAACCCGCAGTTCAGATTCTCAGGTTATCCGTCAACACACCA 1189
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 834 CCGTATCAACATGTTCCAAAACCCGCAGTTCAGCTTCTCAGGTTATCCGTCAACACACCA 893
Query 1190 TGCCTCAGCTCTCATGTCAGGGACTTGA 1217
||||||||||||||||||||||||||||
Sbjct 894 TGCCTCAGCTCTCATGTCAGGGACTTGA 921
> Ahg474546 jgi|Araly1|474546|fgenesh2_kg.1__4500__AT1G54150.1
Length=1354
Score = 183 bits (99), Expect = 2e-45
Identities = 136/152 (89%), Gaps = 9/152 (6%)
Strand=Plus/Minus
Query 1318 TTACAAAATTTCTTCCTTTTAAAAACTTTGCTTTCATATCCTCTACAATCTCTCACTCTA 1377
|||||||||||||||| ||| |||||||| |||||||||||||| ||||||||||||| |
Sbjct 1354 TTACAAAATTTCTTCC-TTT-AAAACTTTCCTTTCATATCCTCTGCAATCTCTCACTCAA 1297
Query 1378 TATTGAGTGACTTGACGAACTTTCAAATCATTGTCAAACTATTTTGTTAA------CTT- 1430
||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1296 TATAGAGTGGCTTGAAGAACTTTCAAATCATTGTCAAACTATTTTGTTAATTAAAACTTT 1237
Query 1431 CCGATTCTCTGAGAGTACAAATTGCATTACCC 1462
|||||||||||||||| |||||||||||||||
Sbjct 1236 CCGATTCTCTGAGAGTTCAAATTGCATTACCC 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54697591820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5