BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54170.1
Length=2267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474549 jgi|Araly1|474549|fgenesh2_kg.1__4503__AT1G54170.1 2976 0.0
> Ahg474549 jgi|Araly1|474549|fgenesh2_kg.1__4503__AT1G54170.1
Length=2065
Score = 2976 bits (1611), Expect = 0.0
Identities = 1906/2044 (93%), Gaps = 37/2044 (2%)
Strand=Plus/Plus
Query 178 GTTGATTCCAGCTTTGTTGAGGTTAAAGCAACTATGAAGCCTGTTCTTCACTCGGGTTCT 237
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 22 GTTGATTTCAGCTTTGTTGAGGTTAAAGCAACTATGAAGCCTGTTCTTCACTCGGGCTCT 81
Query 238 TCATCCAATGGATTTTCACACAGGAGATTTGAAAAGGAGGCAT-GGATGAATAACGCACA 296
||||||||||||||||||||||| ||| ||||||| ||| | | ||||||||||||||||
Sbjct 82 TCATCCAATGGATTTTCACACAGAAGAGTTGAAAAAGAGAC-TGGGATGAATAACGCACA 140
Query 297 GCCTTCTGTTGACAATACAGAAAACGGTTGGGACGCTGAAAGTGTGGATACCCCTTCTCA 356
|||||||| |||| |||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 141 GCCTTCTGCGGACACTACAGAAAACGGTTGGGAAGCTGGAAGTGTGGATACCCTTTCTCA 200
Query 357 GAAGCTGTTAGTGTATTTCACAACTTGTAATATTGGACATCAGGTAGAAGTTCATCTCAA 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 CAAGCTGTTAGTGTATTTCACAACTTGTAATATTGGACATCAGGTAGAAGTTCATCTCAA 260
Query 417 AAATGGATCTGTTTACAGCGGCATATTTCATGCTGCTAATGTGGAGAAGGATTTTGGAAT 476
||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 261 AAATGGATCGGTTTACAGTGGCATATTTCATGCTGCTGATGTGGAGAAGGATTTTGGAAT 320
Query 477 CATTTTGAAAATGGCATGCTTGATTAGGGATTCACGAGGAACCAAATCCCG-T----AC- 530
||||||||||||||||||||||| ||||||||||| |||||||||||||| | |
Sbjct 321 TATTTTGAAAATGGCATGCTTGATGAGGGATTCACGGGGAACCAAATCCCGTTCGCCGCT 380
Query 531 TGTCAGCAAGCCATCTTCAAAGCTACTCAAAATCCCTGCTGACGAACTTGTGCAAGTTAT 590
||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 381 TGTCAGCAAGCCACCTTCAAAGATACTCATTATCCCTGCTGACGAACTTGTGCAAGTTAT 440
Query 591 AGCTAAGGACCTTCCTCTATCCAGCGATAGCGTCTCAGATTCTGTTCAGTGCGAGAAACC 650
|||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| ||
Sbjct 441 AGCTAAGGACCTTCCTGTATCCAGCAATAACGTCTCAGATTCTGTTCAGTGCGAGAAGCC 500
Query 651 TTTAGAGCTGTTGACAGACTCTCTGATATCACAGTTTTATAATGTTGATTTGGAAAGAGA 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 TTTAGAGCTGTTGACAGACTCTCTGATATCACAGTTTTATAATGTTGATTTGGAAAGAGA 560
Query 711 GCTGAAACCTTGGGTACCTGATGAAGATGTTCCAGACTGTTCAGATCTGGAGAATGTGTT 770
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 561 GCTGAAACCTTGGGTACCTGATGAAGATGGTCCAGACTGTTCAGATCTGGAGAATGTGTT 620
Query 771 TGATGATCCTTGGAAGAGGGGCTGGAATCAGTTTGAGGTCAATAAGACATTATTTGGAGT 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 TGATGATCCTTGGAAGAGGGGCTGGAATCAGTTTGAGGTCAATAAGACATTATTTGGAGT 680
Query 831 AACAAGCACTTTTGATGAGGAACTGTATACCACAAAACTTGAGAGAGGTCCTGGAACGAG 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 AACAAGCACTTTTGATGAGGAACTGTATACCACAAAACTTGAGAGAGGTCCTGGAACGAG 740
Query 891 GGAGCTAGAAGAGCAAGCCTTAAGGATTGCGAGAGAGATTGTGGGTGAGAATACCCGAGA 950
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 741 GGAGCTAGAAGAGCAAGCCTTGAGGATTGCGAGAGAGATTGTGGGTGAGAATACTCGAGA 800
Query 951 TATTCACGTAGCAGAGGAAAGAGGGCTCCAGCTTAGTGGAAAGTTTGATATTGATGAGGA 1010
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TCTTCACGTAGCAGAGGAAAGAGGGCTCCAGCTTAGTGGAAAGTTTGATATTGATGAGGA 860
Query 1011 AACCAAATACTCATCGGTCTGTGCGACTAATAGATTTGATGATACGTGTTATGAAGACGA 1070
|||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||
Sbjct 861 AACCAAATACTCATCGGTCTGTACGGCTAATAGATTTGATGATACATGTTATGAAGACGA 920
Query 1071 TgaagaagaagaagaagaTATATTATTGGATTGCTGCAACAATTTGACTTTTGGTGATTC 1130
| || ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 921 --A-GACGAAGAAGAAGACATATTGTTGGATTGCTGCAACAATTTGACTTTTGGTGACTC 977
Query 1131 TTCTGCTTCTGATGGCAAGGAACCTGCTTCAACTGGCAAATTCTATGAAGATTCATGGGG 1190
||||||||||||||||||| ||||||||||||||||||| |||| ||||| |||||||
Sbjct 978 TTCTGCTTCTGATGGCAAGAAACCTGCTTCAACTGGCAAGGTCTACGAAGAAACATGGGG 1037
Query 1191 TGACAGCCTGCATTTACGGAGTAACAAAATGGTAGATCAGAGCTGGTCGAACTCAAATAA 1250
|||||||||||||||||||| || ||| || ||||| |||||||||||||||||||||||
Sbjct 1038 TGACAGCCTGCATTTACGGAATATCAACATTGTAGACCAGAGCTGGTCGAACTCAAATAA 1097
Query 1251 GCATACTCGCCAGCTTATGTCCGAACTGCCATCCAAAGATTTTCCTGTTGCAGGAAACAA 1310
|||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1098 GCATACTCACCAGCTTATGTCTGAACAGCCATCCAAAGATTTTCCTGTTGCAGGAAACAA 1157
Query 1311 CATCAGGAATGAGAGCCAGCTTGGTGAGCAAAGAAAGAGCAAATTCCTAGGGGCTTCCCT 1370
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1158 AATCAGGAATGAGAGCCAGCTTGGTGAGCAAAGAAAGAGCAAATTTCTAGGGGCTTCCCT 1217
Query 1371 TTTTAAAAAGCCATCTGAGGAATCAGTGTCTGGTTTTGAAGATGCACCACCACCTGTGAA 1430
|| || |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 1218 TTATAGAAAGCCATCTGAGGAATCAGTGTCTGGTCTTGAAGATGCACCACCATCTGAGAA 1277
Query 1431 GCCAAGTTTCATTGATGGAAGACTCGGTCTACTCTCTGACAGAGCAAAGTCTGAGAACTC 1490
||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1278 GCCAAGTTTCACTGCTGGAAGACTCGGTCTACTCTCTGACAGAGCAAAATCTGAGAGCTC 1337
Query 1491 TTCTGGGTGGCCTGGAAGCTCCATTTCTAGAAATTCAGAAAACTCTGCAGCTTCCTCAGC 1550
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1338 TTCTGGGTGGCCTGGAAGCTCCCTTTCTAGAAATTCAGAAAACTCTGCAGCTTCCTCAGC 1397
Query 1551 ATCAAATCTTCCAATACTGTCACCAAGCTCTTCG---GGTTCTTTATCATCAGAAAAATC 1607
|||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1398 ATCAAATCGTCCAATACTATCACCAAGCTCTTCAATTGGTTCTTTATCATCTGAAAAATC 1457
Query 1608 CACACTCAACCCAAATGCTAAGGAATTTAAACTGAACCCTAACGCAAAGAGTTTCAAACC 1667
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1458 CACACTCAACCCAAATGCTAAGGAATTTAAACTGAACCCCAACGCAAAGAGTTTCAAGCC 1517
Query 1668 ATCT-CCATCAGCAACACGTCCTCAATCTCCTCAATCTCCAGTCTTTGACGGATCATTCT 1726
|||| || | || || | | | || |||||||||||||||| |||||||||||||
Sbjct 1518 ATCTTCC--C--CATCA-G-C-TAAAAGTCCTCAATCTCCAGTCCCAGACGGATCATTCT 1570
Query 1727 ATTATCCTCCTGTTCCACCCATGCCAGGACTACATATTCGATACGGAACGGGAGCAGCAT 1786
||||||||||||||||||||||||||||| ||| |||||||| ||||| |||||||||||
Sbjct 1571 ATTATCCTCCTGTTCCACCCATGCCAGGATTACGTATTCGATTCGGAATGGGAGCAGCAT 1630
Query 1787 TCCCTGGGCAACAACACCCAATGATGTATAACAATACAACACAGCTTAGTCCGAATCAAA 1846
||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1631 TCCCTGGACAACAACACCCAATGATGTATAATAATACAACACAGCTTAGTCCTAATCAAA 1690
Query 1847 CATATTATTCTCCAAATAGTCCACAGTACCCACAACCGATGATGGTTACTCAGCAGAGAC 1906
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1691 CATATTATTCTCCAAATAGTCCACAGTACCCACAACAGATGATGGTTACTCAACAGAGAC 1750
Query 1907 CAATCTTGTTCATGCCGCCAACGCCATACCAACCGGAGATGCCATACAAAGGAAGAGACT 1966
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1751 CGGTCTTGTTCATGCCGCCAACGCCATACCAACCGGAGATGCCATACAATGGAAGAGACT 1810
Query 1967 CTTATTAGCTTTTGGCCAAAACCATGAATGGTGGTGGC----ACAAGAGAAGGTCTCGAG 2022
||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct 1811 CTTATTAGCTTTTGGCCAAAACCATGACTGGTGGTGGCTGGCACAAGGGAAGGTCTCGAA 1870
Query 2023 ----CTGATGGAATTGGtttcatttaatgtactttatttttatttatttccaaagcaccg 2078
|||||||||||||||||||||||| ||||||||||| ||||||||| || ||||||
Sbjct 1871 TATTCTGATGGAATTGGTTTCATTTAATTTACTTTATTTT-ATTTATTTC-AA-GCACCG 1927
Query 2079 aatcttttcatttttattcTAAA-ATGAACACAATT-GATGTGATGGTGATTTAGTTTGT 2136
|||||||||||||||||| ||| || | |||| |||||||||||||||||||||||
Sbjct 1928 AATCTTTTCATTTTTATT-TAATTATTTTTA-AATTTGATGTGATGGTGATTTAGTTTGT 1985
Query 2137 TTAGGTATTAGACTAGATTTTACATTAGATTCGTGCTGATCTCATTTCTTTATTCACTTC 2196
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1986 TTAGGTATTAGACTAGATTTTACATTAGATTCTTGCTGATCTCATTTCTTTATTCACTTG 2045
Query 2197 TGTT 2200
||||
Sbjct 2046 TGTT 2049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85360239045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5