BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54180.1
Length=1892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914608 jgi|Araly1|914608|Al_scaffold_0001_4862 821 0.0
Ahg478808 jgi|Araly1|478808|fgenesh2_kg.3__1509__AT3G14000.2 433 3e-120
Ahg478805 jgi|Araly1|478805|fgenesh2_kg.3__1506__AT3G13990.1 124 2e-27
> Ahg914608 jgi|Araly1|914608|Al_scaffold_0001_4862
Length=1038
Score = 821 bits (444), Expect = 0.0
Identities = 502/530 (95%), Gaps = 3/530 (1%)
Strand=Plus/Plus
Query 857 GTCGTGAGATGTTTAATAAATGGCAAGCTCAAAAATGGTGGGTGGAGAATTTCGAGAAGG 916
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 509 GTCGTGAGATGTTCAATAAATGGCAAGCTCAAAGATGGTGGGTGGAGAATTTCGAGAAGG 568
Query 917 TCATGGAGTTATACAACGT---GCAGTTCAATCAGCAGAGCGTACCGCTTCAAACTCCTC 973
||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||||||
Sbjct 569 TCATGGAGTTATACAACGTGCAGCAGTTTAATCAGCAGAGCGTGCCGCTTCCAACTCCTC 628
Query 974 CTGTATCTGAAGATGGGGGCTCACAAATACAGTCCGTGAAGGACAGTCCTGTAACTCCAC 1033
||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 629 CTGTATCTGAACATGGGGTCTCACAAATACAGTCCGCGAAGGACAGTCCTGTAACTCCAC 688
Query 1034 CGCTGGAAAGAGAGCGACCTCACCGCAATATTCCAGGCTCTTCTGGTTTTGCTTCAACCC 1093
| ||||||||||||||||||| | ||||||||||||||||||||||| |||||||||| |
Sbjct 689 CTCTGGAAAGAGAGCGACCTCGCAGCAATATTCCAGGCTCTTCTGGTCTTGCTTCAACAC 748
Query 1094 CAAAGCTCTCTAGCATCAGCGGAACCAAGACTGAAACATCATCTATCGATGGTTCTGCTA 1153
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 749 CAAAGCTCTCTAGCATCAGCGGAACCAAGACTGAAACATCATCAATCGATGGTTCTGCTA 808
Query 1154 GAAGTAGCTCGGTAGATCGATCCGAGGAGGTCTCAGTGAGTAACGCAAGTGACATGGAAA 1213
|||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 809 GAAGTAGCTCAGTAGATCGATCTGAGGAGGTCTCAGTGAGTAACGCAAGCGACATGGAAA 868
Query 1214 GTGAATGGGTAGAACAAGATGAGCCTGGTATCTATATTACTATCAGAGCTTTACCAGATG 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 GTGAATGGGTAGAACAAGATGAGCCTGGTATCTATATTACTATCAGAGCTTTACCAGATG 928
Query 1274 GAAATCGCGAGCTTAGGCGAGTTCGATTCAGCCGAGACAAGTTTGGGGAAACACATGCGA 1333
| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 929 GTAATCGCGAGCTTAGACGCGTTCGATTCAGCCGAGACAAGTTTGGGGAAACACAGGCGA 988
Query 1334 GGTTATGGTGGGAACAAAACAGAGCGCGTATACAACAGCAATACTTGTGA 1383
|||| ||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 989 GGTTGTGGTGGGAACAGAACAGAGCTCGGATACAACAGCAATACTTGTGA 1038
Score = 769 bits (416), Expect = 0.0
Identities = 478/509 (94%), Gaps = 0/509 (0%)
Strand=Plus/Plus
Query 271 ATGCTGACGTGTATAGCTTGCACGAAGCAGCTTAACACCAACAATGGCGGATCTACTCGA 330
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCTGACTTGTATAGCGTGCACGAAGCAGCTTAACACCAACAATGGCGGATCTACTCGA 60
Query 331 GAAGAAGATGAAGAACACGGAGTTATTGGTACCCCTAGGACTAAGCAAGCGATTAAATCA 390
||||||||||||||| ||||||| ||||| || |||||||||||||| ||||||||||||
Sbjct 61 GAAGAAGATGAAGAAGACGGAGTCATTGGGACTCCTAGGACTAAGCAGGCGATTAAATCA 120
Query 391 CTGACGTCACAGCTAAAAGACATGGCAGTAAAGGCTTCAGGGGCATACAAAAACTGCAAA 450
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 121 CTGACGTCACAGCTAAAAGACATGGCAGTAAAAGCTTCAGGGGCATATAAAAACTGCAAA 180
Query 451 CCGTGTTCTGGGACAACAAACCGGAATCAGAATCGAAACTATGCTGATTCGGATGCTGCT 510
||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 181 CCGTGTTCTGGGACATCAAAGCGGAATCAGAATCGAAACTATGCTGATTCGGATGTTGCT 240
Query 511 TCAGATTCTGGAAGATTCCATTATTCATACCAGAGAGCTGGGACTGCAACCTCAACTCCT 570
|| |||||||| ||||| |||||| |||||||||||||||||||||||| |||||||||
Sbjct 241 TCGGATTCTGGGAGATTTCATTATGCATACCAGAGAGCTGGGACTGCAAGCTCAACTCCA 300
Query 571 AAGATTTGGGGGAATGAAATGGAGTCAAGGTTAAAAGGGATTTCTAGTGAAGAAGGTACA 630
||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||
Sbjct 301 AAGATTTGGGGGAATGATATGGAGTCCAGGTTAAAAGGGCTTTCTAGTGAAGAAGGTACA 360
Query 631 CCTACGTCTATGAGTGGTCGAACAGAATCCATAGTGTTCATGGAGGATGATGAGGTCAAG 690
||||| || |||||||| ||||| ||||||||||||||||||||||| ||||||| ||||
Sbjct 361 CCTACTTCCATGAGTGGCCGAACGGAATCCATAGTGTTCATGGAGGAGGATGAGGCCAAG 420
Query 691 GAATGGGTTGCTCAAGTGGAGCCTGGTGTTCTCATCACATTTGTGTCATTGCCTCAGGGA 750
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 421 GAATGGGTTGCGCAAGTGGAGCCTGGTGTTCTCATCACATTTGTGTCATTGCTTCAAGGA 480
Query 751 GGGAATGATCTTAAGAGAATTCGGTTCAG 779
||||||||||| |||||||||||||||||
Sbjct 481 GGGAATGATCTAAAGAGAATTCGGTTCAG 509
> Ahg478808 jgi|Araly1|478808|fgenesh2_kg.3__1509__AT3G14000.2
Length=1710
Score = 433 bits (234), Expect = 3e-120
Identities = 407/489 (83%), Gaps = 17/489 (3%)
Strand=Plus/Plus
Query 304 AACACCAACAATGGCGGATCT---ACTCGAGAAGAAGATGAAG-A-AC-ACGGAGTTATT 357
|||||||||||||| |||||| | | |||||| ||||||| | || || |||||||
Sbjct 379 AACACCAACAATGGTGGATCTAAGAAACAAGAAGATGATGAAGAAGACGACAGAGTTATC 438
Query 358 GGTACCCCTAGGACTAAGCAAGCGATTAAATCACTGACGTCACAGCTAAAAGACATGGCA 417
|| || |||||| ||||||| |||||||| || |||||||||||| | ||||||||||||
Sbjct 439 GGAACTCCTAGGTCTAAGCAGGCGATTAAGTCCCTGACGTCACAGATTAAAGACATGGCA 498
Query 418 GT-AAAGGCTTCAGGGGCATACAAAAACTGCAAACCGTGTTCTGGGACAACAAACCGGAA 476
|| ||| || ||||| || ||||||| ||||||||||||||||||| | |||||| |||
Sbjct 499 GTGAAA-GCATCAGGTGCTTACAAAAGCTGCAAACCGTGTTCTGGGTCGTCAAACCAGAA 557
Query 477 TCAGAATCGAAACTATGCTGATTCGGATGCTGCTTCAG-ATTCTGGAAGATTCCATTATT 535
| |||| |||||||| |||||||||||||||||||| | ||||||| || || | ||||
Sbjct 558 TAAGAACCGAAACTACGCTGATTCGGATGCTGCTTC-GAATTCTGGGAGGTTTCGTTATG 616
Query 536 CATACCAGAGAGCTGGGACTGCAACCTCAACTCCTAAGATTTGGGGGAATGAAATGGAGT 595
| ||| ||||||| |||| || | |||||| || || |||| |||||| ||||||||||
Sbjct 617 CGTACAAGAGAGCGGGGAGTGGTAGCTCAACACCGAAAATTTTGGGGAAGGAAATGGAGT 676
Query 596 CAAGGTTAAAAGGGATTTCT-AGTGAAGAAGGTACACCT-ACGTCTATGAGTGGTCGAAC 653
||||||| ||| || ||| | |||| |||||| |||||| | || ||||||||| | ||
Sbjct 677 CAAGGTTGAAA-GGTTTTTTGAGTGGAGAAGGAACACCTGA-ATCCATGAGTGGTAGGAC 734
Query 654 AGAATCCATAGTGTTCATGG-AG--GATGATGAGGTCAAGGAATGGGTTGCTCAAGTGGA 710
||| |||| ||| ||||||| || || |||||| |||||||||||||||||||||||||
Sbjct 735 AGAGTCCACAGTATTCATGGAAGAAGAAGATGAGCTCAAGGAATGGGTTGCTCAAGTGGA 794
Query 711 GCCTGGTGTTCTCATCACATTTGTGTCATTGCCTCAGGGAGGGAATGATCTTAAGAGAAT 770
||||||||| |||||||||||||| ||||||||| |||||||||||||| | ||| | ||
Sbjct 795 GCCTGGTGTCCTCATCACATTTGTATCATTGCCTGAGGGAGGGAATGATATGAAGCGGAT 854
Query 771 TCGGTTCAG 779
||| |||||
Sbjct 855 TCGTTTCAG 863
> Ahg478805 jgi|Araly1|478805|fgenesh2_kg.3__1506__AT3G13990.1
Length=2916
Score = 124 bits (67), Expect = 2e-27
Identities = 210/273 (77%), Gaps = 33/273 (12%)
Strand=Plus/Plus
Query 1612 ATAATGCCCCTGCATCTCTACAAC-TCCAATGTT---GCAACAGCCACAGGCGCCGATGG 1667
||||| ||||| |||| | || | ||| ||||| |||||| | |||||| | || |
Sbjct 2008 ATAATACCCCTCCATC-C-AC-TCTTCCCATGTTGCAGCAACAACAACAGGCATCAAT-G 2063
Query 1668 C-ACAGATTTATTCACAGGTTCATGTTTCACATTTTCCCAATGGT-ATGCCATATCGTCA 1725
| |||||| ||| | ||||| |||||||| |||||||||||| | ||||| ||||||||
Sbjct 2064 CAACAGATGTATCCGCAGGTCCATGTTTCGCATTTTCCCAAT-CTCATGCCTTATCGTCA 2122
Query 1726 GTTCCTCTCTCCAGTCTATGTCCCCCGAATCCCCATG-CA-G-TA-T-A--T-------- 1770
|||||||| ||||||||||| |||| ||| |||||| || | || | | |
Sbjct 2123 ATTCCTCTCCCCAGTCTATGTTCCCCAAATGCCCATGCCAGGCTACTCAGGTAACCCAGC 2182
Query 1771 -GC---T---CACCCTTTAAATGGCAATAGCTATGTGCTGATGCCTGGAGGCAGTTCTCA 1823
|| | ||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 2183 AGCATATGCACACCCTTCAAATGGCAATAGCTATGTGCTGATGCCTGGAGGCGGTTCTCA 2242
Query 1824 TCCCAGCGCAAATGGACTCAAATATGGAATCCA 1856
|| | | ||||||| |||| |||||||||||
Sbjct 2243 TCTCGGTTCAAATGGTGTCAAGTATGGAATCCA 2275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71076397170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5