BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54200.1
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474551 jgi|Araly1|474551|fgenesh2_kg.1__4505__AT1G54200.1 1524 0.0
> Ahg474551 jgi|Araly1|474551|fgenesh2_kg.1__4505__AT1G54200.1
Length=1261
Score = 1524 bits (825), Expect = 0.0
Identities = 1127/1262 (89%), Gaps = 64/1262 (5%)
Strand=Plus/Plus
Query 23 AACAAAGCGTGCctcttctctctttcttcatcattctcatcaagctttcttcttcaCCAA 82
||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 1 AACAAAGCGTGCCTCTTCTCTCTCTCTTCATCATTCTCATC-A----TCTTCTTCACCAC 55
Query 83 ATTCCCAACACTATCATTCCCTTCTTCCTCTATAAAGAATCATCACTT-CTTCTTCTTCT 141
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 56 ATTCCCAACATTATCATTCCCTTCTTCCTCTATAAAGAATCATCACTTCCTTCTTCTTC- 114
Query 142 CAATGGATCCTTGGGAT-ACTTATAACATACCACTAGACCACCAACACCGTCTCCGTAAC 200
| ||||||||||||||| || ||||||| |||| ||||||||| ||| |||||||||||
Sbjct 115 CCATGGATCCTTGGGATAAC-TATAACAAACCAATAGACCACC-ACA--GTCTCCGTAAC 170
Query 201 CGCCGTGACCACCGTCATCCTTCCTTCTCCT-CTACTCTCCTCGACCAAATTTACCGCTC 259
||||||||||||||||||||||| ||||||| || |||||||||||||||| ||||||||
Sbjct 171 CGCCGTGACCACCGTCATCCTTCTTTCTCCTCCT-CTCTCCTCGACCAAATCTACCGCTC 229
Query 260 CATCGACGATTCCTCTACTAACTCCTCATCCATGAGAAAAACCAAACATCAGAACCGCGA 319
|||||||||||||||||| |||||||| ||| || |||| | | | |||
Sbjct 230 CATCGACGATTCCTCTACCAACTCCTCCTCC--CAG---AACC--GC-GGTG-A---CGA 277
Query 320 GGACACGCGTGTTTCTGCTAACCG-C-C-G---CG---ACGATTTCAACAGATCCAAGAA 370
||| ||| |||||||||||||| | | | || ||| ||||||||||||||||||
Sbjct 278 -GACTCGC--GTTTCTGCTAACCGTCGCGGAACCGCCAACGGTTTCAACAGATCCAAGAA 334
Query 371 TC---TTAAAACCATAGAACCTGTTTTCTTCAAACATTCAAGCTCAAGCTCCTCTGACTC 427
|| ||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||
Sbjct 335 TCTTATTAAAACCATAGAACCTGTTTTCTTTAAACATTCGAGCTCTAGCTCATCTGACTC 394
Query 428 AAGCGGATTCTCGTCTTCCGAGTCTGATTATTTCTACAGACGATCTAAATCCTCGCCGGC 487
|||||| ||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||
Sbjct 395 AAGCGGTTTCTCTTCTTCAGAGTCTGATTCTTTCTACAGGCGATCTAAATCCTCGCCGGC 454
Query 488 GATTTCTCATCCTAAACCGATACGAACCACCGTGGA-ACGATTCGAAAGATCTCCTCAGA 546
||||||||||||||||||||| ||| ||||||| || | |||||||| ||||||||||||
Sbjct 455 GATTTCTCATCCTAAACCGATTCGAGCCACCGTCGAGA-GATTCGAACGATCTCCTCAGA 513
Query 547 ATCACCGACCTAACAGTAGTAATAAACAAGAACATGGAAGCTTTCTCAAAACGAAATCTA 606
| ||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 514 ACCACCGACTTAAC---AG---TAAACAAGAACATGGAAGCTTTCTCAAAACGAAATCTA 567
Query 607 AAGCGTTGAAGATTTATAGCGATTTGAAGAAAGTGAAACAACCGATTTCTCCCGGTGGTC 666
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 568 AAGCTTTGAAGATTTATAGCGATTTGAAGAAAGTTAAACAACCGATCTCTCCCGGTGGTC 627
Query 667 GTCTCGCTACTTTCCTTAACTCCATATTCACCGGCGCCGGAAACACTAAAAAACTTAACA 726
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 628 GTCTCGCTACTTTCCTTAACTCCATATTCACCGGCGCCGGAAACACTAAAAAGCTTAACA 687
Query 727 AAATCAACACAACCGTCACTTCCACCACCGCCGCCGCCGCCGCAGCGTCATCAACCACTA 786
|||||||||| ||||||||||| ||| ||| ||||||| |||||||||||||||| |
Sbjct 688 AAATCAACACCACCGTCACTTCTGCCA---CCGTCGCCGCCACAGCGTCATCAACCACCA 744
Query 787 CATGCTCCTCTGCTTCATCATTCTCCAGATCTTGCTTGAGCAAAACGCCATCGTCTAGCG 846
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 CATGCTCCTCTGCATCGTCATTCTCCAGATCTTGCTTGAGCAAAACGCCATCGTCTAGCG 804
Query 847 AAAAATCGAAAAGATCCGTACGTTTTTGTCCCGTCAACGTCATCTTCGACGAAGACTCCT 906
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 805 AAAAATCGAAAAGATCCGTACGGTTTTGTCCCGTTAACGTCATCTTCGACGAAGACTCCT 864
Query 907 CCAAGTACAACAACAAGAACAACAAAGTGTACGGAAACAACGAACGTGAATATGAATCCA 966
|| | ||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 865 CC---TCCAAGTACAACAAGAACAAAGTGTACGGAAACAACGAACGTGAATATGAATCCA 921
Query 967 TTCGTCATACTCTAGAGAACCGAGTCATGGAAGAGAATCGTCGTGTAATCGAAGCAGCTA 1026
||||||||||||||||| | |||||||||||||||||||||| ||||| ||||||||||
Sbjct 922 CTCGTCATACTCTAGAGATCAGAGTCATGGAAGAGAATCGTCGCGTAATAGAAGCAGCTA 981
Query 1027 AAGAACTTCTGAGAAGTTACCAGAAGAAGAATAAAGAAGTCATTGAAGTCTCCGTCGAAG 1086
||||||||||||||| ||| ||||||||||||||||| ||| ||||| |||||| |||||
Sbjct 982 AAGAACTTCTGAGAACTTATCAGAAGAAGAATAAAGACGTCGTTGAAATCTCCGGCGAAG 1041
Query 1087 ACGATGAAGAAGACGACGATGATGATGCGTTGAGTTGCACAAGCTCTGATCTGTTCGAGT 1146
|||| || || ||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 1042 ACGACGAC-AA--CGA---TGATG---CGTTGAGTTGCACAAGCTCTGATTTGTTCGAGT 1092
Query 1147 TGGATAATTTGTCGGCGATAGGAATCGATAGGTATAGAGAGGAGCTTCCGGTTTACGAAA 1206
|||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||
Sbjct 1093 TGGATAATTTGTCGGCGATAGGGATCGATAGGTATCGAGAAGAGCTTCCGGTTTACGAAA 1152
Query 1207 CAACTCGCTTGAACACTAATCGTATCATTTCTAGATGATTATAATAATTAATTACTTGGT 1266
||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct 1153 CAACTCGCTTGAACACTAATCGTATAATTTCAAGATGATTATAATAATAAATTACTTGGT 1212
Query 1267 TT 1268
||
Sbjct 1213 TT 1214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50665356693
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5