BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G54210.1

Length=631
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg314728 jgi|Araly1|314728|fgenesh1_pm.C_scaffold_1003508           499    9e-141
  Ahg318184 jgi|Araly1|318184|fgenesh1_pm.C_scaffold_3001200           324    6e-88 


> Ahg314728 jgi|Araly1|314728|fgenesh1_pm.C_scaffold_1003508
Length=291

 Score =  499 bits (270),  Expect = 9e-141
 Identities = 284/291 (98%), Gaps = 0/291 (0%)
 Strand=Plus/Plus

Query  34   ATGGCGACGGAGTCGTCGTCCCCGAGCTCTGTTCGGAAAGTTGTTGTTCATCTAAGAGCT  93
            ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGATGGAGTCGTCGTCCCCGGGCTCTGTTCGGAAAGTTGTTGTTCATCTAAGAGCT  60

Query  94   ACTGGAGGTGCTCCTATACTCAAACAATCTAAGTTCAAGATTCCAGGGACTGATAAATTT  153
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  61   ACTGGAGGTGCTCCTATACTCAAACAATCTAAGTTCAAGATTCCGGGGACTGATAAATTT  120

Query  154  GCCAAAGTGATTGACTTTCTTAGAAGACAGCTTCATTCTGATTCGTTGTTTGTCTATGTG  213
            || ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct  121  GCTAAAGTGATTGACTTTCTAAGAAGACAGCTTCATTCTGACTCATTGTTTGTCTATGTG  180

Query  214  AATAGTGCTTTCTCGCCAAACCCTGATGAATCAGTCATTGATCTTTATAATAACTTTGGA  273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AATAGTGCTTTCTCGCCAAACCCTGATGAATCAGTCATTGATCTTTATAATAACTTTGGA  240

Query  274  TTTGATGGTAAACTGGTGGTTAACTATGCTTGTTCCATGGCATGGGGCTAA  324
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TTTGATGGTAAACTGGTGGTTAACTATGCTTGTTCCATGGCATGGGGCTAA  291


> Ahg318184 jgi|Araly1|318184|fgenesh1_pm.C_scaffold_3001200
Length=285

 Score =  324 bits (175),  Expect = 6e-88
 Identities = 242/275 (88%), Gaps = 2/275 (1%)
 Strand=Plus/Plus

Query  51   GTCCCCGAGCTCTGTTCGGAAAGTTGTTGTTCATCTAAGAGCTACTGGAGGTGCTCCTAT  110
            ||| ||||  |||||||||||| ||||||||||||||||||||||||| |||||| | ||
Sbjct  12   GTCTCCGAATTCTGTTCGGAAAATTGTTGTTCATCTAAGAGCTACTGGTGGTGCTTCAAT  71

Query  111  AC-TCAAACAATCTAAGTTCAAGATTCCAGGGACTGATAAATTTGCCAAAGTGATTGACT  169
             | | ||||||||||| ||||||||| |||||||||| |||||||| ||||||||||| |
Sbjct  72   -CTTGAAACAATCTAAATTCAAGATTGCAGGGACTGAAAAATTTGCTAAAGTGATTGATT  130

Query  170  TTCTTAGAAGACAGCTTCATTCTGATTCGTTGTTTGTCTATGTGAATAGTGCTTTCTCGC  229
            |||| ||| | |||||||| ||||| || |||||||| ||||| || || ||||||||||
Sbjct  131  TTCTAAGACGGCAGCTTCACTCTGACTCATTGTTTGTTTATGTAAACAGCGCTTTCTCGC  190

Query  230  CAAACCCTGATGAATCAGTCATTGATCTTTATAATAACTTTGGATTTGATGGTAAACTGG  289
            | ||||| ||||| ||||| |||||||| || ||||||||||| ||||||||||||||||
Sbjct  191  CTAACCCCGATGAGTCAGTAATTGATCTATACAATAACTTTGGGTTTGATGGTAAACTGG  250

Query  290  TGGTTAACTATGCTTGTTCCATGGCATGGGGCTAA  324
            ||||||||||||||||||||||||||||||| |||
Sbjct  251  TGGTTAACTATGCTTGTTCCATGGCATGGGGTTAA  285



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23102487702


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5