BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G54215.1

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474552 jgi|Araly1|474552|fgenesh2_kg.1__4506__AT1G54215.1         658    0.0  


> Ahg474552 jgi|Araly1|474552|fgenesh2_kg.1__4506__AT1G54215.1
Length=513

 Score =  658 bits (356),  Expect = 0.0
 Identities = 462/513 (90%), Gaps = 7/513 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTTTTCTTCAATCTCTCTTCGGATCTCGGAGCCTCTATGTTTTCATTCTCGCTCTG  60
            |||||||||||||||||||||||| |||||||||||||  || |||| || |||||||||
Sbjct  1    ATGGGTTTTCTTCAATCTCTCTTCAGATCTCGGAGCCTAAATATTTTGATCCTCGCTCTG  60

Query  61   TTTTTCACCATTCATTGTTT-CCTCCTCGTCCAATCACAAGACCCACCTTTGTTTCCACA  119
            ||||||| || | || |||| ||| ||||||||||||||||||||||||||  |||||||
Sbjct  61   TTTTTCAGCAGTAATAGTTTCCCT-CTCGTCCAATCACAAGACCCACCTTTCATTCCACA  119

Query  120  ATctcctcctccaccaccaccgcctcctcctccaccgccg---cctcctcctccaccacc  176
            ||||||||| || ||||| || ||||| || |||||||||   ||||||||||| |||||
Sbjct  120  ATCTCCTCCGCCTCCACCGCCACCTCCACCACCACCGCCGCCTCCTCCTCCTCCTCCACC  179

Query  177  accacctcctccgccaGCTGTCAATATGAGCGTCGAAACAGGCATTCCTCCACCGCCTCC  236
            |||||| || || ||| |||||||| |||||||||| ||||||| | ||||||| |||||
Sbjct  180  ACCACCACCGCCACCACCTGTCAATGTGAGCGTCGATACAGGCACTGCTCCACCACCTCC  239

Query  237  TCCAGTCACGGATATGATTAAGCCTCTGTCTTCTCCGCCGCCGCCTCAACCACCACCGAG  296
            |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct  240  TCCAGTCACGGATATGATTAAGCCTCTGTCTTCTCCGCCGCCACCTAAACCACCACCGAG  299

Query  297  GTCACAA-CCACCTCCGAAGCCTCCCCAAAAGAACCTGCCACGGCGGCATCCTCCTCCTC  355
            ||||||| || |||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct  300  GTCACAATCC-CCTCCGCAGCCTCCCCAAAAGAACCTGCCACGGCGGCTTCCTCCTCCTC  358

Query  356  CTCGGTCTCCGGAGAAACCGAAAAGAGATGGTTTAAACAAAGGGAAGACGGTGGGACTAG  415
            ||||| |||||||||||  |||||| | ||||||||||||||||||||||||||||||||
Sbjct  359  CTCGGCCTCCGGAGAAATTGAAAAGCGGTGGTTTAAACAAAGGGAAGACGGTGGGACTAG  418

Query  416  TCTTTGTTGGGTTAATAGCAATGTTGCAGGTTATTGTTGTTGTATTCTTGGTTTTCAAGA  475
            ||||||||||||| |||||||||||||||||  | |||||||| ||||||||||||||||
Sbjct  419  TCTTTGTTGGGTTGATAGCAATGTTGCAGGTCCTCGTTGTTGTCTTCTTGGTTTTCAAGA  478

Query  476  GAAAGCAGCTTCTCAGCTTGAAAGACACTAATT  508
            |||| |||||| |||||||||||||||||||||
Sbjct  479  GAAAACAGCTTTTCAGCTTGAAAGACACTAATT  511



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18543616254


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5