BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G54217.2 Length=811 Score E Sequences producing significant alignments: (Bits) Value Ahg474553 jgi|Araly1|474553|fgenesh2_kg.1__4507__AT1G54217.1 811 0.0 > Ahg474553 jgi|Araly1|474553|fgenesh2_kg.1__4507__AT1G54217.1 Length=821 Score = 811 bits (439), Expect = 0.0 Identities = 656/751 (87%), Gaps = 54/751 (7%) Strand=Plus/Plus Query 75 TTCTTTCGCCATGAATTCGAC-AGATTTAGAGGAACAAAAGAAAGGAAAGTATGTTCTAA 133 |||||||| ||||| | | | | ||||||||||||||| ||||||||||||| |||||| Sbjct 102 TTCTTTCGATATGAA-T-G-CTA-ATTTAGAGGAACAAAGGAAAGGAAAGTATATTCTAA 157 Query 134 TCCGTGATGATGCTGAGGACTCTGAGTTAGGACAATTCTATAAGCCCCTTCCTTGCTTCG 193 |||||||||||| |||||||||||||||||| || ||||||||||||||||||||||| | Sbjct 158 TCCGTGATGATGGTGAGGACTCTGAGTTAGGCCATTTCTATAAGCCCCTTCCTTGCTTTG 217 Query 194 GTTTTGGAATCGGATGGTTCTCGTTTCTTCTAGGATTCGTCTTCCCGTTTGCGTGGTACG 253 ||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | Sbjct 218 GTTGTGGAATCGGATGGTTCTCGTTTCTTCTTGGATTCGTCTTCCCATTTGCGTGGTATG 277 Query 254 TTGCTACATTTCTTTATTTGATC-AGCTATTACCATAGAGATCCTCGGGAAAGATCTGGT 312 ||||||||||||| ||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 278 TTGCTACATTTCTATATTTGA-CAAACTATTACCGTAGAGATCCTCGGGAAAGATCTGGT 336 Query 313 CTTGCTGCCTCTGCTATAGCTGCTTTGATATTCTCTGTTGCACTTGTGATCACCGTGCTT 372 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 337 CTTGCTGCCTCCGCTATAGCTGCTTTGATATTCTCTGTTGCACTTGTGATCACCGTGCTT 396 Query 373 GTGCTTGTTTTCTCGGGTCGCTAGGGTCTTGCTACAGATTGCATATTCTTTCTGAGTTTC 432 |||||||||||||||| ||||||| |||||| |||| |||||||||||||||| ||||| Sbjct 397 GTGCTTGTTTTCTCGGCTCGCTAGAGTCTTGTTACACTTTGCATATTCTTTCTGTGTTTC 456 Query 433 AAAGGAAAACAGCTAGCTTCTAA-GTCTGTTTCCACAACAAGTTaaaaaaaCTTCAATTT 491 ||||||||||| | |||| || ||||||||||||| ||||| ||||| | | ||| Sbjct 457 AAAGGAAAACA---A-CTTCAAAAGTCTGTTTCCACACCAAGTGAAAAA---T--A-TTT 506 Query 492 GATGAAGAGAATTTCGGTTTCGAAGAGAGTGTACTGCTAGTC-TTTTTAGAATCAAAATT 550 | | | || ||||| || |||||||||||| ||||| ||||||||||| Sbjct 507 CA--A---------C--TT--GAAGA-AGAGTACTGCTAGTCCTTTTT-GAATCAAAATT 549 Query 551 TGGTTTGCTTTGTACATAAGTCAGTGTATACATTTAAACAATCGAAATGTGATATATA-A 609 ||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||| | Sbjct 550 TGGTTTGCTTTGTACATAAGTCAGTGTATACTTTTAAACAATTGAAATGAGATATATATA 609 Query 610 -CTCTTGGAGATCTATGTATTGTAAGCCAGACAATAACCCTAGCCAAGGTTATGTACTTA 668 ||||||||||| |||||||| |||||||||||| ||||||| |||||||||||| || Sbjct 610 ACTCTTGGAGATTTATGTATTTTAAGCCAGACAAGAACCCTACCCAAGGTTATGT-CT-- 666 Query 669 TGTCTGGttcttatcttccttcttcaaag-ctttt-t--ctttcttt-cttATTGACCCT 723 | | |||||||||||||| ||||||| ||||| | |||||||| |||||||| ||| Sbjct 667 -G---G-TTCTTATCTTCCTTGTTCAAAGTCTTTTCTGTCTTTCTTTTCTTATTGAACCT 721 Query 724 CAAGAAACAGAGAAAAGAATGGAACTAAGGGTAGAAGCTTTGACGATTAGGATTTGTATT 783 ||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| Sbjct 722 CAAGAAACAGAGAAAGGAATGGAATTAAGGGAAGAAGCTTTGACGATTAGGATTTGTATT 781 Query 784 GCCTCT-ATGTC--GTGTTGTTTGAATCATC 811 |||||| ||||| ||||| ||| ||||||| Sbjct 782 GCCTCTTATGTCTAGTGTTATTTAAATCATC 812 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29964612762 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5