BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54217.2
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474553 jgi|Araly1|474553|fgenesh2_kg.1__4507__AT1G54217.1 811 0.0
> Ahg474553 jgi|Araly1|474553|fgenesh2_kg.1__4507__AT1G54217.1
Length=821
Score = 811 bits (439), Expect = 0.0
Identities = 656/751 (87%), Gaps = 54/751 (7%)
Strand=Plus/Plus
Query 75 TTCTTTCGCCATGAATTCGAC-AGATTTAGAGGAACAAAAGAAAGGAAAGTATGTTCTAA 133
|||||||| ||||| | | | | ||||||||||||||| ||||||||||||| ||||||
Sbjct 102 TTCTTTCGATATGAA-T-G-CTA-ATTTAGAGGAACAAAGGAAAGGAAAGTATATTCTAA 157
Query 134 TCCGTGATGATGCTGAGGACTCTGAGTTAGGACAATTCTATAAGCCCCTTCCTTGCTTCG 193
|||||||||||| |||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 158 TCCGTGATGATGGTGAGGACTCTGAGTTAGGCCATTTCTATAAGCCCCTTCCTTGCTTTG 217
Query 194 GTTTTGGAATCGGATGGTTCTCGTTTCTTCTAGGATTCGTCTTCCCGTTTGCGTGGTACG 253
||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 218 GTTGTGGAATCGGATGGTTCTCGTTTCTTCTTGGATTCGTCTTCCCATTTGCGTGGTATG 277
Query 254 TTGCTACATTTCTTTATTTGATC-AGCTATTACCATAGAGATCCTCGGGAAAGATCTGGT 312
||||||||||||| ||||||| | | |||||||| |||||||||||||||||||||||||
Sbjct 278 TTGCTACATTTCTATATTTGA-CAAACTATTACCGTAGAGATCCTCGGGAAAGATCTGGT 336
Query 313 CTTGCTGCCTCTGCTATAGCTGCTTTGATATTCTCTGTTGCACTTGTGATCACCGTGCTT 372
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 CTTGCTGCCTCCGCTATAGCTGCTTTGATATTCTCTGTTGCACTTGTGATCACCGTGCTT 396
Query 373 GTGCTTGTTTTCTCGGGTCGCTAGGGTCTTGCTACAGATTGCATATTCTTTCTGAGTTTC 432
|||||||||||||||| ||||||| |||||| |||| |||||||||||||||| |||||
Sbjct 397 GTGCTTGTTTTCTCGGCTCGCTAGAGTCTTGTTACACTTTGCATATTCTTTCTGTGTTTC 456
Query 433 AAAGGAAAACAGCTAGCTTCTAA-GTCTGTTTCCACAACAAGTTaaaaaaaCTTCAATTT 491
||||||||||| | |||| || ||||||||||||| ||||| ||||| | | |||
Sbjct 457 AAAGGAAAACA---A-CTTCAAAAGTCTGTTTCCACACCAAGTGAAAAA---T--A-TTT 506
Query 492 GATGAAGAGAATTTCGGTTTCGAAGAGAGTGTACTGCTAGTC-TTTTTAGAATCAAAATT 550
| | | || ||||| || |||||||||||| ||||| |||||||||||
Sbjct 507 CA--A---------C--TT--GAAGA-AGAGTACTGCTAGTCCTTTTT-GAATCAAAATT 549
Query 551 TGGTTTGCTTTGTACATAAGTCAGTGTATACATTTAAACAATCGAAATGTGATATATA-A 609
||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||| |
Sbjct 550 TGGTTTGCTTTGTACATAAGTCAGTGTATACTTTTAAACAATTGAAATGAGATATATATA 609
Query 610 -CTCTTGGAGATCTATGTATTGTAAGCCAGACAATAACCCTAGCCAAGGTTATGTACTTA 668
||||||||||| |||||||| |||||||||||| ||||||| |||||||||||| ||
Sbjct 610 ACTCTTGGAGATTTATGTATTTTAAGCCAGACAAGAACCCTACCCAAGGTTATGT-CT-- 666
Query 669 TGTCTGGttcttatcttccttcttcaaag-ctttt-t--ctttcttt-cttATTGACCCT 723
| | |||||||||||||| ||||||| ||||| | |||||||| |||||||| |||
Sbjct 667 -G---G-TTCTTATCTTCCTTGTTCAAAGTCTTTTCTGTCTTTCTTTTCTTATTGAACCT 721
Query 724 CAAGAAACAGAGAAAAGAATGGAACTAAGGGTAGAAGCTTTGACGATTAGGATTTGTATT 783
||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 722 CAAGAAACAGAGAAAGGAATGGAATTAAGGGAAGAAGCTTTGACGATTAGGATTTGTATT 781
Query 784 GCCTCT-ATGTC--GTGTTGTTTGAATCATC 811
|||||| ||||| ||||| ||| |||||||
Sbjct 782 GCCTCTTATGTCTAGTGTTATTTAAATCATC 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29964612762
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5