BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G54220.1
Length=2052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914615 jgi|Araly1|914615|Al_scaffold_0001_4869 2039 0.0
Ahg478800 jgi|Araly1|478800|fgenesh2_kg.3__1501__AT3G13930.1 1483 0.0
> Ahg914615 jgi|Araly1|914615|Al_scaffold_0001_4869
Length=1653
Score = 2039 bits (1104), Expect = 0.0
Identities = 1192/1236 (96%), Gaps = 0/1236 (0%)
Strand=Plus/Plus
Query 487 GCCAGGTGGCTGAAAAAAGAAGGTGATAAAGTTGCTCCTGGGGAAGTACTCTGTGAAGTT 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCCAGGTGGCTGAAAAAAGAAGGTGATAAAGTTGCTCCTGGGGAAGTACTCTGTGAAGTT 477
Query 547 GAAACTGACAAAGCAACTGTCGAAATGGAATGCATGGAAGAGGGCTATCTCGCCAAGATT 606
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 478 GAAACTGACAAAGCAACCGTGGAAATGGAATGCATGGAAGAGGGATATCTCGCCAAGATT 537
Query 607 GTAAAGGCGGAAGGTTCAAAAGAAATTCAAGTCGGCGAGGTAATTGCTATTACAGTTGAA 666
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GTAAAGGCGGAGGGTTCAAAAGAAATTCAAGTCGGCGAGGTAATTGCTATTACAGTTGAA 597
Query 667 GATGAAGAGGACATTGGAAAGTTCAAAGATTACACCCCATCATCTACTGCTGATGCCGCT 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 598 GATGAAGAGGACATTGGAAAGTTCAAAGATTACACCCCATCATCTACTGCTGATGTCGCT 657
Query 727 CCTACAAAAGCAGAACCAACTCCTGCCCCACCAAAGGAAGAGAAGGTCAAACAGCCATCA 786
||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 658 CCTCCTAAAGCAGAACCAACTCCTGCCCCACCAAAGGAAGAGAAGGTTGAACAGCCATCA 717
Query 787 TCGCCTCCTGAACCGAAGGCCTCCAAGCCTAGCACACCTCCCACAGGAGATCGTGTTTTT 846
||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 718 TCGCCTCCTGAACTGAAGGCTTCCAAGCCTAGCGTACCTCCCACAGGAGATCGTGTTTTT 777
Query 847 GCTAGTCCTCTTGCAAGAAAGTTGGCTGAAGATAATAACGTGCCTCTCTCAGACATCGAA 906
||||||||||||||||||||||||||||||||||| || ||||||||| || ||||| ||
Sbjct 778 GCTAGTCCTCTTGCAAGAAAGTTGGCTGAAGATAAGAATGTGCCTCTCGCAAACATCAAA 837
Query 907 GGCACAGGTCCTGAAGGACGGATAGTGAAGGCAGATATCGATGAGTATTTAGCTTCAAGT 966
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 838 GGCACAGGTCCTGAAGGACGAATAGTGAAGGCAGATATCGATGAGTATTTAGCTTCAAGT 897
Query 967 GGTAAAGGAGCTACTGCGAAGCCATCTAAGTCAACTGATTCTAAGGCCCCAGCTTTGGAC 1026
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 898 GGTAAAGGAGCTATTGCGAAGCCATCTAAGTCAACTGATTCTAATGCCCCAGCTTTGGAC 957
Query 1027 TATGTTGACATCCCTCATTCTCAGATACGAAAGGTCACAGCCTCACGTTTGGCATTCTCA 1086
||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 958 TATGTTGACGCCCCTCATTCTCAGATACGAAAGGTCACAGCATCACGTTTAGCATTCTCA 1017
Query 1087 AAGCAAACTATCCCTCACTATTACTTAACCGTCGATACATGTGTTGACAAACTTATGGCT 1146
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1018 AAGCAAACTATCCCTCACTATTACTTAACCGTCGATACATGTGTTGATAAACTTATGGGT 1077
Query 1147 CTGAGGAGTCAGCTTAATTCATTCAAAGAGGCTTCTGGTGGGAAACGGATATCTGTCAAT 1206
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1078 CTGAGGAGTCAGCTTAATTCATTCCGAGAGGCTTCTGGTGGGAAACGGATATCTGTCAAT 1137
Query 1207 GATCTTGTTGTTAAGGCTGCTGCATTAGCTCTCAGAAAAGTTCCTCAGTGCAATAGTTCA 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GATCTTGTTGTTAAGGCTGCTGCATTAGCTCTCAGAAAAGTTCCTCAGTGCAATAGTTCA 1197
Query 1267 TGGACTGACGATTACATCCGCCAGTTTAAAAATGTGAACATCAACGTCGCGGTGCAGACA 1326
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1198 TGGACTGACGATTACATCCGCCAGTTTAAAAATGTGAACATCAACGTCGCAGTGCAGACA 1257
Query 1327 GAAAACGGGCTGTATGTCCCTGTTGTGAAGGACGCAGACAGGAAGGGTCTGTCCACAATT 1386
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1258 GAAAACGGGCTGTATGTCCCTGTTGTGAAGGATGCAGACAAGAAGGGTCTGTCCACAATT 1317
Query 1387 GGAGAAGAAGTTCGGTTATTAGCTCAAAAAGCAAAAGAGAACAGCTTAAAGCCAGAAGAT 1446
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GGAGAAGAAGTTCGGTTATTGGCTCAAAAAGCAAAAGAGAACAGCTTAAAGCCAGAAGAT 1377
Query 1447 TATGAGGGAGGAACATTTACTGTCTCTAACTTGGGAGGACCTTTTGGCATCAAGCAATTC 1506
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1378 TATGAGGGAGGAACATTTACGGTCTCTAACTTGGGAGGACCTTTTGGCATAAAGCAATTT 1437
Query 1507 TGTGCAGTCGTTAATCCACCTCAAGCCGCCATTCTAGCAGTTGGATCCGCTGAAAAGAGA 1566
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1438 TGTGCAGTCGTTAATCCACCTCAAGCCGCCATTCTAGCAGTTGGATCTGCTGGAAAGAGA 1497
Query 1567 GTTGTCCCTGGTAACGGTCCAGATCAATTCAACTTTGCTTCTTACATGCCTGTTACACTG 1626
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1498 GTTGTCCCTGGTAACGGACCAGATCAATTCAACTTTGCCTCTTACATGCCTGTTACACTG 1557
Query 1627 AGCTGTGACCATCGCGTAGTAGACGGTGCCATTGGAGCTGAATGGTTGAAAGCATTTAAG 1686
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1558 AGCTGTGACCATCGCGTAGTAGACGGTGCCATTGGAGCTGAGTGGTTGAAAGCATTTAAG 1617
Query 1687 GGATACATCGAGAACCCTAAATCTATGTTACTCTAA 1722
||||||||||||||||| |||||||||| ||||||
Sbjct 1618 GGATACATCGAGAACCCCGAATCTATGTTGCTCTAA 1653
Score = 486 bits (263), Expect = 2e-136
Identities = 340/377 (90%), Gaps = 5/377 (1%)
Strand=Plus/Plus
Query 103 ATGGCTTATGCGTCACGCATCATTAATCATTCCAAGAAGTTGAAGGATGTTTCCACTTTA 162
||||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||||
Sbjct 1 ATGGCTTATGCGTCACGCATCATCAATCATTCCAAGAAGTTGAAGGATATTTCGAGTTTA 60
Query 163 CTACGCCGTGAGAATGCTGCAACGATCCGCTACTACTCGAATACTAATCGAGCTCCTCTG 222
|| | ||||||| ||||||||| | ||||||||| |||||| ||||||||| ||||||||
Sbjct 61 CTGCACCGTGAGCATGCTGCAATGGTCCGCTACTTCTCGAACACTAATCGAACTCCTCTG 120
Query 223 AACAGAGAAGATACTTTCAATTCCCGTCTTGGTTATCCCCCACTGGAGAGGATTTCCATA 282
|||||| ||||| |||||| | |||||||||||||| |||||||||| |||||||||| |
Sbjct 121 AACAGACAAGATTCTTTCAGTGCCCGTCTTGGTTATTCCCCACTGGAAAGGATTTCCAAA 180
Query 283 TGTAGCACCAGCACTTTACCGGTGTCCATTATTTTTTCAACTACGAGATCAAATCTAAGC 342
||||||| ||||| |||| || | | |||||||||||||||| ||| ||| ||
Sbjct 181 TGTAGCATTGGCACTGTACCAGTATGC---GGTTTTTCAACTACGAGAACAATTCTTAGT 237
Query 343 AGTGCAATGGGAAGGCCAATATTTGGAAAAGAATTTTCATGTT-TGATGCAATCAGCTAG 401
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 238 AGTGCAATGGGAAGGCCAATATTTGGAAAAGAATTTTCATGTTAT-ATGCAATCAGCTAG 296
Query 402 AGGATTTTCATCGGGTTCAGATCTGCCTCCTCATCAAGAGATCGGGATGCCTTCTCTCTC 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGGATTTTCATCGGGTTCAGATCTGCCTCCTCATCAAGAGATCGGGATGCCTTCTCTCTC 356
Query 462 GCCAACAATGACTGAGG 478
|||||||||||||||||
Sbjct 357 GCCAACAATGACTGAGG 373
> Ahg478800 jgi|Araly1|478800|fgenesh2_kg.3__1501__AT3G13930.1
Length=2051
Score = 1483 bits (803), Expect = 0.0
Identities = 1373/1641 (84%), Gaps = 68/1641 (4%)
Strand=Plus/Plus
Query 121 ATCATTAATCATTCCAAGAAGTTGAAGGATGTTTCCACTTTACTACGCCGTGAGAATGCT 180
||||||||||||||||| |||||||| ||||||| ||||||| || ||||| |||||
Sbjct 174 ATCATTAATCATTCCAAAAAGTTGAAACATGTTTCTGCTTTACTGCGGCGTGACCATGCT 233
Query 181 GCAAC-GATCCGCTACTACTCGAATACTAATCGAG--CTC-CTC--T-GAACAGAGAAGA 233
| | | |||||| | ||| || | | | | || ||| ||| | ||| | ||||||
Sbjct 234 GTGGCTG-TCCGCTGTTTCTCCAACAGT-AGCCAGCCCTCTCTCATTGGAA-A-AGAAGA 289
Query 234 TACT-TTCAATTCCCGTCTTG-GTTATCCCCCACTGGAGAGGATTTCCATATGTAGCACC 291
|| | ||||| |||| | || |||| || | | ||||| ||||| | |||| | ||
Sbjct 290 TA-TCTTCAAGGCCCG-CCTGAATTATTCCTCTGTAGAGAGAATTTCAAAATGTGGTACT 347
Query 292 AGCACTTTACCGGTGTCCATTA-T--TTTTTCAACTACGAG-ATC-AAATCTAAGCAGTG 346
||| | || | || | ||| | | ||||||| ||||| | | ||| ||||||||
Sbjct 348 GGCAATGTAACAATG--C-TTAGTGGTATTTCAACAACGAGCA-CGAAA-CTAAGCAGCA 402
Query 347 CAATGGGAAGG-CC--AA-TATTTGGAAAAGAATTTTC-ATG-T--TTGATGCAATCAGC 398
|||| || ||| || || ||||| || ||| |||| | | | ||||| |||||
Sbjct 403 CAAT-GGCAGGACCAAAACTATTT---AACGAA-TTTCTAAGCTCCCAGATGCGATCAG- 456
Query 399 T-AGAGGATTTTCATCGGGTTCAGATCTGCCTCCTCATCAAGAGATCGGGATGCCTTCTC 457
| |||||||||||||| |||||||||| ||||||||||||||||| || ||||||||||
Sbjct 457 TGAGAGGATTTTCATCCAGTTCAGATCTTCCTCCTCATCAAGAGATTGGAATGCCTTCTC 516
Query 458 TCTCGCCAACAATGACTGAGGGTAACATCGCCAGGTGGCTGAAAAAAGAAGGTGATAAAG 517
| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 517 TTTCGCCAACAATGACTGAGGGTAACATTGCCAGGTGGCTGAAGAAAGAGGGTGATAAAG 576
Query 518 TTGCTCCTGGGGAAGTACTCTGTGAAGTTGAAACTGACAAAGCAACTGTCGAAATGGAAT 577
|||||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 577 TTGCTCCTGGTGAAGTGCTTTGTGAAGTTGAAACTGACAAAGCAACAGTCGAAATGGAAT 636
Query 578 GCATGGAAGAGGGCTATCTCGCCAAGATTGTAAAGGCGGAAGGTTCAAAAGAAATTCAAG 637
| ||||||||||| | |||||||||||| ||||||| ||| || |||||||||||||||
Sbjct 637 GTATGGAAGAGGGTTTTCTCGCCAAGATAGTAAAGGAGGAGGGGGCAAAAGAAATTCAAG 696
Query 638 TCGGCGAGGTAATTGCTATTACAGTTGAAGATGAAGAGGACATTGGAAAGTTCAAAGATT 697
| || ||||| |||||||| |||||||||||||||||||| ||| |||||| |||||||
Sbjct 697 TTGGGGAGGTGATTGCTATCACAGTTGAAGATGAAGAGGATATTCAAAAGTTTAAAGATT 756
Query 698 ACAC-CCCATCATCTACTGCTGATGCCGCTCCTACAAAAGCAGAACCAACTCCTGCCCCA 756
|||| ||| ||||| | ||| | ||||| | | ||||| ||||| ||||| |||||
Sbjct 757 ACACACCC-TCATCCGGTACTGGTCCCGCTGCGCCTGAAGCAAAACCAGCTCCTTCCCCA 815
Query 757 CCAAAGGAAGAGAAGGTCA-A-ACAGCCA-TCA-TCGCCTCCTGAA-CCGAAGGCCTCCA 811
||||||||||||||||| | | | ||||| || | | |||||||| || ||| || |
Sbjct 816 CCAAAGGAAGAGAAGGT-AGAGA-AGCCAGCCAGT-G-CTCCTGAAGCC-AAGATATCTA 870
Query 812 AGCCTAGCACACCTCCCACAGGAGATCGTGTTTTTGCTAGTCCTCTTGCAAGAAAGTTGG 871
|||| ||| | |||| ||| ||||||| ||||||| ||||||||||||||||||||||
Sbjct 871 AGCCAAGCTCGGCTCCTTCAGAAGATCGTATTTTTGCCAGTCCTCTTGCAAGAAAGTTGG 930
Query 872 CTGAAGATAATAACGTGCCTCTCTC-AGACATCGAAGGCACAGGTCCTGAAGGACGGATA 930
||||||||||||| || |||||||| || ||| ||||||||||||||||||||||||||
Sbjct 931 CTGAAGATAATAATGTACCTCTCTCAAG-CATTAAAGGCACAGGTCCTGAAGGACGGATA 989
Query 931 GTGAAGGCAGATATCGATGAGTAT-TTAGCTTCAAGTGGTAAAGGAGCTACTGCGAAGCC 989
|||||||| ||| |||| || | | ||||||||| | |||||| | ||||||| || ||
Sbjct 990 GTGAAGGCTGATGTCGAAGA-TTTCTTAGCTTCAGGCAGTAAAGAAACTACTGCCAAACC 1048
Query 990 ATCTAAGTCAACT-GATTCTAAGGCCCCAGCTTTGGACTATGTTGACATCCCTCATTCTC 1048
|| ||| ||| | ||||| |||| |||||| |||||||||||||||| ||||| |||
Sbjct 1049 TTCCAAG-CAAGTGGATTCAAAGGTTCCAGCTCTGGACTATGTTGACATACCTCACACTC 1107
Query 1049 AGATACGAAAGGTCACAGCCTCACGTTTGGCATTCTCAAAGCAAACTATCCCTCACTATT 1108
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1108 AGATACGAAAGGTCACAGCCTCACGTTTGGCATTCTCAAAGCAAACTATTCCTCACTACT 1167
Query 1109 ACTTAACCGTCGATACATGTGTTGACAAACTTATGGCTCTGAGGAGTCAGCTTAATTCAT 1168
|||| ||||| |||||||||||||||||| | |||| ||| |||||||| || |||||||
Sbjct 1168 ACTTGACCGTGGATACATGTGTTGACAAAATGATGGGTCTTAGGAGTCAACTCAATTCAT 1227
Query 1169 T-CAAAGAGGCTTCTGGTGGGAAACGGATATCTGTCAATGATCTTGTTGTTAAGGCTGCT 1227
| ||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1228 TTCAA-GAGGCTTCTGGTGGGAAACGGATATCTGTAAATGATCTTGTTATTAAGGCTGCT 1286
Query 1228 GCATTAGCTCT-CAGAAAAGTTCCTCAGTGCAATAGTTCATGGACTGACGATTACATCCG 1286
||| | ||||| | ||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1287 GCACTGGCTCTTC-GAAAAGTTCCTCAGTGCAATAGTTCATGGACAGACGAATACATCCG 1345
Query 1287 CCAGTTTAAAAATGTGAACATCAACGTCGCGGTGCAGACAGAAAACGGGCTGTATGTCCC 1346
||| |||||||||||||||||||| ||||| || || |||||||| ||||| ||||| ||
Sbjct 1346 CCAATTTAAAAATGTGAACATCAATGTCGCTGTACAAACAGAAAATGGGCTCTATGTTCC 1405
Query 1347 TGTTGTGAAGGACGCAGACAGGAAGGGTCTGTCCACAATTGGAGAAGAAGTTCGGTTATT 1406
||| || |||||||| |||| ||| || |||||||||||||||||||| ||||| || ||
Sbjct 1406 TGTGGTCAAGGACGCGGACAAGAAAGGACTGTCCACAATTGGAGAAGAGGTTCGATTCTT 1465
Query 1407 AGCTCAAAAAGCAAAAGAGAACAGCTTAAAGCCAGAAGATTATGAGGGAGGAACATTTAC 1466
||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 1466 GGCTCAAAAAGCAAAAGAAAACAGCTTGAAGCCGGAAGATTATGAGGGAGGAACATTCAC 1525
Query 1467 TGTCTCTAACTTGGGAGGACCTTTTGGCATCAAGCAATTCTGTGCAGTCGTTAATCCACC 1526
||||| ||| |||||||||||||||||||||| || |||||||| ||| | ||||||||
Sbjct 1526 AGTCTCCAACCTGGGAGGACCTTTTGGCATCAAACAGTTCTGTGCCGTCATCAATCCACC 1585
Query 1527 TCAAGCCGCCATTCTAGCAGTTGGATCCGCTGAAAAGAGAGTTGT-CCCTGGTAAC-GGT 1584
||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| | |||
Sbjct 1586 TCAAGCCGCCATTCTAGCAATTGGATCCGCTGAAAAGAGAGTTGTTCCC-GGTG-CTGGT 1643
Query 1585 CCAGATCAATTCAACTTTGCTTCTTACATGCCTGTTACACTGAGCTGTGACCATCGCGTA 1644
|| || |||| |||| ||||||| |||||| |||| ||||| ||||||||||| ||||||
Sbjct 1644 CCTGACCAATACAACGTTGCTTCATACATGTCTGTAACACTAAGCTGTGACCACCGCGTA 1703
Query 1645 GTAGACGGTGCCATTGGAGCTGAATGGTTGAAAGCATTTAAGGGATACATCGAGAACCCT 1704
|||| ||||| |||||||| || ||| |||||||||| |||||||||||||||| |||
Sbjct 1704 ATAGATGGTGCAATTGGAGCCGAGTGGCTGAAAGCATTCAAGGGATACATCGAGACCCC- 1762
Query 1705 A-AATCTATGTTACTCTAAAA 1724
| |||||||||| || |||||
Sbjct 1763 AGAATCTATGTTGCTGTAAAA 1783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77170836370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5